Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2494617Class d: Alpha and beta proteins (a+b) [53931] (388 folds)
  3. 2516578Fold d.58: Ferredoxin-like [54861] (59 superfamilies)
    alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
  4. 2518968Superfamily d.58.7: RNA-binding domain, RBD [54928] (6 families) (S)
  5. 2519561Family d.58.7.0: automated matches [191529] (1 protein)
    not a true family
  6. 2519562Protein automated matches [190896] (11 species)
    not a true protein

Species:

  1. 2519563Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [189319] (9 PDB entries)
    1. Domains for 2km8:
      1. 2519577Domain d2km8b_: 2km8 B: [242561]
        automated match to d2x1ba_
        protein/RNA complex
      2. 2519578Domain d2km8c1: 2km8 C:156-241 [242562]
        automated match to d1u1qa1
        protein/RNA complex
      3. 2519579Domain d2km8c2: 2km8 C:242-322 [242563]
        automated match to d1u1qa2
        protein/RNA complex
    2. Domain for 2la4:
    3. Domain for 2x1a:
    4. Domain for 2x1b:
    5. Domain for 2x1f:
    6. Domains for 3md1:
      1. 2519564Domain d3md1a1: 3md1 A:161-240 [181013]
        Other proteins in same PDB: d3md1a2
        automated match to d1x5sa1
        complexed with gol
      2. 2519565Domain d3md1b_: 3md1 B: [181014]
        Other proteins in same PDB: d3md1a2
        automated match to d1x5sa1
        complexed with gol
    7. Domains for 3md3:
      1. 2519573Domain d3md3a1: 3md3 A:75-159 [265066]
        automated match to d1cvja1
        complexed with gol, so4
      2. 2519574Domain d3md3a2: 3md3 A:160-240 [265067]
        automated match to d1cvja1
        complexed with gol, so4
    8. Domain for 4uqt:
    9. Domains for 5lsl:
      1. 2519568Domain d5lsla_: 5lsl A: [332971]
        automated match to d3mdfa_
        protein/RNA complex
      2. 2519569Domain d5lslb_: 5lsl B: [332939]
        automated match to d3mdfa_
        protein/RNA complex
      3. 2519570Domain d5lslc_: 5lsl C: [332980]
        automated match to d3mdfa_
        protein/RNA complex
      4. 2519571Domain d5lsld_: 5lsl D: [332937]
        automated match to d3mdfa_
        protein/RNA complex
  2. 2519580Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [279753] (6 PDB entries)
    1. Domain for 2mzq:
    2. Domain for 2mzr:
    3. Domain for 2mzs:
    4. Domain for 5d77:
    5. Domain for 5d78:
    6. Domains for 5t9p:
      1. 2519583Domain d5t9pa_: 5t9p A: [326329]
        automated match to d1d8za_
        complexed with cl, so4
      2. 2519584Domain d5t9pb_: 5t9p B: [344401]
        automated match to d5t9pa_
        complexed with cl, so4
      3. 2519585Domain d5t9pc_: 5t9p C: [344402]
        automated match to d5t9pa_
        complexed with cl, so4
      4. 2519586Domain d5t9pd_: 5t9p D: [326334]
        automated match to d1d8za_
        complexed with cl, so4
  3. 2519590Barley (Hordeum vulgare) [TaxId:4513] [261791] (1 PDB entry)
  4. 2519592Fruit fly (Drosophila melanogaster) [TaxId:7227] [332223] (2 PDB entries)
    1. Domains for 5uzg:
      1. 2519593Domain d5uzga_: 5uzg A: [332225]
        automated match to d2kg0a_
        complexed with gol, so4
      2. 2519594Domain d5uzgb_: 5uzg B: [332286]
        automated match to d2kg0a_
        complexed with gol, so4
    2. Domains for 5uzm:
      1. 2519595Domain d5uzma_: 5uzm A: [332231]
        automated match to d2kfya_
      2. 2519596Domain d5uzmb_: 5uzm B: [332224]
        automated match to d2kfya_
  5. 2519597Helicobacter pylori [TaxId:210] [255348] (1 PDB entry)
  6. 2519599Human (Homo sapiens) [TaxId:9606] [188315] (89 PDB entries)
    1. Domain for 2d9p:
    2. Domain for 2dgp:
    3. Domain for 2dgq:
    4. Domain for 2dgs:
    5. Domain for 2dgt:
    6. Domain for 2dgu:
    7. Domain for 2dgv:
    8. Domain for 2dgw:
    9. Domain for 2dh8:
    10. Domain for 2dh9:
    11. Domain for 2dhg:
    12. Domain for 2div:
    13. Domain for 2dk2:
    14. Domain for 2dnh:
    15. Domain for 2dnk:
    16. Domain for 2dnm:
    17. Domain for 2dno:
    18. Domain for 2dnp:
    19. Domain for 2dnq:
    20. Domain for 2dny:
    21. Domain for 2do4:
    22. Domain for 2e5h:
    23. Domain for 2fc8:
    24. Domain for 2fc9:
    25. Domain for 2fho:
    26. Domain for 2hgl:
    27. Domain for 2hgm:
    28. Domain for 2hgn:
    29. Domain for 2k8g:
    30. Domain for 2kfy:
    31. Domain for 2kg0:
    32. Domains for 2kxf:
      1. 2519700Domain d2kxfa1: 2kxf A:102-200 [264362]
        Other proteins in same PDB: d2kxfa3
        automated match to d2mpua_
      2. 2519701Domain d2kxfa2: 2kxf A:201-297 [264363]
        Other proteins in same PDB: d2kxfa3
        automated match to d2mpua_
    33. Domains for 2kxh:
      1. 2519704Domain d2kxha1: 2kxh A:102-200 [264364]
        Other proteins in same PDB: d2kxha3
        automated match to d2mpua_
      2. 2519705Domain d2kxha2: 2kxh A:201-297 [264365]
        Other proteins in same PDB: d2kxha3
        automated match to d2mpua_
    34. Domain for 2la6:
    35. Domain for 2lcw:
    36. Domain for 2lea:
    37. Domain for 2leb:
    38. Domain for 2lec:
    39. Domain for 2lmi:
    40. Domain for 2lxi:
    41. Domain for 2lxu:
    42. Domain for 2m3d:
    43. Domain for 2m8h:
    44. Domain for 2mb0:
    45. Domain for 2mik:
    46. Domain for 2mil:
    47. Domain for 2mks:
    48. Domain for 2mmy:
    49. Domain for 2my7:
    50. Domain for 2my8:
    51. Domain for 2pe8:
    52. Domain for 2rra:
    53. Domain for 2rrb:
    54. Domain for 2rvj:
    55. Domain for 2ytc:
    56. Domain for 2ywk:
    57. Domain for 3b4d:
    58. Domains for 3b4m:
      1. 2519661Domain d3b4ma_: 3b4m A: [208517]
        automated match to d2cpea1
      2. 2519662Domain d3b4mb_: 3b4m B: [208518]
        automated match to d2cpea1
      3. 2519663Domain d3b4mc_: 3b4m C: [208519]
        automated match to d2cpea1
      4. 2519664Domain d3b4md_: 3b4m D: [208520]
        automated match to d2cpea1
    59. Domains for 3bs9:
      1. 2519624Domain d3bs9a_: 3bs9 A: [172805]
        automated match to d1x5sa1
        complexed with iod
      2. 2519625Domain d3bs9b_: 3bs9 B: [172806]
        automated match to d1x5sa1
        complexed with iod
    60. Domain for 3egn:
    61. Domains for 3hi9:
      1. 2519607Domain d3hi9a_: 3hi9 A: [211068]
        automated match to d1oo0b_
      2. 2519608Domain d3hi9b_: 3hi9 B: [211069]
        automated match to d1oo0b_
      3. 2519609Domain d3hi9c_: 3hi9 C: [211070]
        automated match to d1oo0b_
      4. 2519610Domain d3hi9d_: 3hi9 D: [211071]
        automated match to d1oo0b_
    62. Domains for 3n9u:
      1. 2519604Domain d3n9uc_: 3n9u C: [294006]
        automated match to d3n9ui_
        protein/RNA complex; complexed with gol
      2. 2519605Domain d3n9ui_: 3n9u I: [265075]
        automated match to d4c7qa_
        protein/RNA complex; complexed with gol
    63. Domains for 3p5t:
      1. 2519647Domain d3p5tl_: 3p5t L: [265145]
        automated match to d4c7qa_
        protein/RNA complex
      2. 2519648Domain d3p5tm_: 3p5t M: [265146]
        automated match to d4c7qa_
        protein/RNA complex
      3. 2519649Domain d3p5tn_: 3p5t N: [265147]
        automated match to d4c7qa_
        protein/RNA complex
      4. 2519650Domain d3p5to_: 3p5t O: [265148]
        automated match to d4c7qa_
        protein/RNA complex
      5. 2519651Domain d3p5tp_: 3p5t P: [265149]
        automated match to d4c7qa_
        protein/RNA complex
      6. 2519652Domain d3p5tq_: 3p5t Q: [265150]
        automated match to d4c7qa_
        protein/RNA complex
    64. Domains for 3p6y:
      1. 2519653Domain d3p6yc_: 3p6y C: [265151]
        automated match to d4c7qa_
        protein/RNA complex
      2. 2519654Domain d3p6yd_: 3p6y D: [265152]
        automated match to d4c7qa_
        protein/RNA complex
      3. 2519655Domain d3p6yg_: 3p6y G: [265153]
        automated match to d4c7qa_
        protein/RNA complex
      4. 2519656Domain d3p6yh_: 3p6y H: [265154]
        automated match to d4c7qa_
        protein/RNA complex
      5. 2519657Domain d3p6yk_: 3p6y K: [265155]
        automated match to d4c7qa_
        protein/RNA complex
      6. 2519658Domain d3p6yl_: 3p6y L: [265156]
        automated match to d4c7qa_
        protein/RNA complex
      7. 2519659Domain d3p6yo_: 3p6y O: [265157]
        automated match to d4c7qa_
        protein/RNA complex
      8. 2519660Domain d3p6yp_: 3p6y P: [265158]
        automated match to d4c7qa_
        protein/RNA complex
    65. Domains for 3q2s:
      1. 2519691Domain d3q2sc_: 3q2s C: [265241]
        automated match to d2mpua_
        protein/RNA complex
      2. 2519692Domain d3q2sd_: 3q2s D: [265242]
        automated match to d2mpua_
        protein/RNA complex
    66. Domains for 3r27:
      1. 2519626Domain d3r27a_: 3r27 A: [200430]
        automated match to d3r27b_
        complexed with gol
      2. 2519627Domain d3r27b_: 3r27 B: [196174]
        automated match to d1wexa_
        complexed with gol
    67. Domains for 3rw7:
      1. 2519685Domain d3rw7a1: 3rw7 A:118-199 [249238]
        Other proteins in same PDB: d3rw7a2, d3rw7b_, d3rw7c2, d3rw7d_
        automated match to d1kooa2
      2. 2519686Domain d3rw7c1: 3rw7 C:117-198 [249241]
        Other proteins in same PDB: d3rw7a2, d3rw7b_, d3rw7c2, d3rw7d_
        automated match to d1kooa2
    68. Domain for 3ucg:
    69. Domain for 3ue2:
    70. Domain for 3us5:
    71. Domains for 3uwt:
      1. 2519672Domain d3uwta1: 3uwt A:118-217 [265542]
        Other proteins in same PDB: d3uwta3
        automated match to d2mpua_
        complexed with cl
      2. 2519673Domain d3uwta2: 3uwt A:218-313 [265543]
        Other proteins in same PDB: d3uwta3
        automated match to d2mpua_
        complexed with cl
    72. Domain for 4a8x:
    73. Domains for 4cko:
      1. 2519616Domain d4ckoa3: 4cko A:445-531 [307129]
        Other proteins in same PDB: d4ckoa2, d4ckob3, d4ckoc3, d4ckod3, d4ckoe3, d4ckof3, d4ckog3, d4ckoh3
        automated match to d2adca2
        complexed with cl, zn
      2. 2519617Domain d4ckob4: 4cko B:445-531 [307131]
        Other proteins in same PDB: d4ckoa2, d4ckob3, d4ckoc3, d4ckod3, d4ckoe3, d4ckof3, d4ckog3, d4ckoh3
        automated match to d2adca2
        complexed with cl, zn
      3. 2519618Domain d4ckoc4: 4cko C:445-531 [307133]
        Other proteins in same PDB: d4ckoa2, d4ckob3, d4ckoc3, d4ckod3, d4ckoe3, d4ckof3, d4ckog3, d4ckoh3
        automated match to d2adca2
        complexed with cl, zn
      4. 2519619Domain d4ckod4: 4cko D:445-531 [307135]
        Other proteins in same PDB: d4ckoa2, d4ckob3, d4ckoc3, d4ckod3, d4ckoe3, d4ckof3, d4ckog3, d4ckoh3
        automated match to d2adca2
        complexed with cl, zn
      5. 2519620Domain d4ckoe4: 4cko E:445-531 [307137]
        Other proteins in same PDB: d4ckoa2, d4ckob3, d4ckoc3, d4ckod3, d4ckoe3, d4ckof3, d4ckog3, d4ckoh3
        automated match to d2adca2
        complexed with cl, zn
      6. 2519621Domain d4ckof4: 4cko F:445-531 [307139]
        Other proteins in same PDB: d4ckoa2, d4ckob3, d4ckoc3, d4ckod3, d4ckoe3, d4ckof3, d4ckog3, d4ckoh3
        automated match to d2adca2
        complexed with cl, zn
      7. 2519622Domain d4ckog4: 4cko G:445-531 [307141]
        Other proteins in same PDB: d4ckoa2, d4ckob3, d4ckoc3, d4ckod3, d4ckoe3, d4ckof3, d4ckog3, d4ckoh3
        automated match to d2adca2
        complexed with cl, zn
      8. 2519623Domain d4ckoh4: 4cko H:445-531 [307143]
        Other proteins in same PDB: d4ckoa2, d4ckob3, d4ckoc3, d4ckod3, d4ckoe3, d4ckof3, d4ckog3, d4ckoh3
        automated match to d2adca2
        complexed with cl, zn
    74. Domains for 4cq1:
      1. 2519630Domain d4cq1a2: 4cq1 A:445-531 [237006]
        Other proteins in same PDB: d4cq1a1, d4cq1b1, d4cq1c1, d4cq1d1, d4cq1e1, d4cq1f1, d4cq1g1, d4cq1h1
        automated match to d4ckob2
        complexed with cl, zn
      2. 2519631Domain d4cq1b2: 4cq1 B:445-531 [237000]
        Other proteins in same PDB: d4cq1a1, d4cq1b1, d4cq1c1, d4cq1d1, d4cq1e1, d4cq1f1, d4cq1g1, d4cq1h1
        automated match to d4ckob2
        complexed with cl, zn
      3. 2519632Domain d4cq1c2: 4cq1 C:445-531 [237001]
        Other proteins in same PDB: d4cq1a1, d4cq1b1, d4cq1c1, d4cq1d1, d4cq1e1, d4cq1f1, d4cq1g1, d4cq1h1
        automated match to d4ckob2
        complexed with cl, zn
      4. 2519633Domain d4cq1d2: 4cq1 D:445-531 [237005]
        Other proteins in same PDB: d4cq1a1, d4cq1b1, d4cq1c1, d4cq1d1, d4cq1e1, d4cq1f1, d4cq1g1, d4cq1h1
        automated match to d4ckob2
        complexed with cl, zn
      5. 2519634Domain d4cq1e2: 4cq1 E:445-531 [237004]
        Other proteins in same PDB: d4cq1a1, d4cq1b1, d4cq1c1, d4cq1d1, d4cq1e1, d4cq1f1, d4cq1g1, d4cq1h1
        automated match to d4ckob2
        complexed with cl, zn
      6. 2519635Domain d4cq1f2: 4cq1 F:445-531 [237003]
        Other proteins in same PDB: d4cq1a1, d4cq1b1, d4cq1c1, d4cq1d1, d4cq1e1, d4cq1f1, d4cq1g1, d4cq1h1
        automated match to d4ckob2
        complexed with cl, zn
      7. 2519636Domain d4cq1g2: 4cq1 G:445-531 [236999]
        Other proteins in same PDB: d4cq1a1, d4cq1b1, d4cq1c1, d4cq1d1, d4cq1e1, d4cq1f1, d4cq1g1, d4cq1h1
        automated match to d4ckob2
        complexed with cl, zn
      8. 2519637Domain d4cq1h2: 4cq1 H:445-531 [237002]
        Other proteins in same PDB: d4cq1a1, d4cq1b1, d4cq1c1, d4cq1d1, d4cq1e1, d4cq1f1, d4cq1g1, d4cq1h1
        automated match to d4ckob2
        complexed with cl, zn
    75. Domains for 4ed5:
      1. 2519611Domain d4ed5a1: 4ed5 A:18-99 [234372]
        automated match to d1fxla1
        protein/RNA complex; complexed with edo, gol, m2m
      2. 2519612Domain d4ed5a2: 4ed5 A:100-185 [234388]
        automated match to d1fxla2
        protein/RNA complex; complexed with edo, gol, m2m
      3. 2519613Domain d4ed5b1: 4ed5 B:18-99 [234373]
        automated match to d1fxla1
        protein/RNA complex; complexed with edo, gol, m2m
      4. 2519614Domain d4ed5b2: 4ed5 B:100-186 [234387]
        automated match to d1fxla2
        protein/RNA complex; complexed with edo, gol, m2m
    76. Domains for 4egl:
      1. 2519676Domain d4egla1: 4egl A:18-99 [234378]
        automated match to d1fxla1
        complexed with gol, so4
      2. 2519677Domain d4egla2: 4egl A:100-184 [234389]
        automated match to d1fxla2
        complexed with gol, so4
    77. Domain for 4f25:
    78. Domain for 4f26:
    79. Domains for 4fxv:
      1. 2519640Domain d4fxva1: 4fxv A:20-99 [221592]
        Other proteins in same PDB: d4fxva2, d4fxvb2, d4fxvc2, d4fxvd2
        automated match to d2cpja1
      2. 2519641Domain d4fxvb1: 4fxv B:20-97 [221593]
        Other proteins in same PDB: d4fxva2, d4fxvb2, d4fxvc2, d4fxvd2
        automated match to d2cpja1
      3. 2519642Domain d4fxvc1: 4fxv C:20-99 [221594]
        Other proteins in same PDB: d4fxva2, d4fxvb2, d4fxvc2, d4fxvd2
        automated match to d2cpja1
      4. 2519643Domain d4fxvd1: 4fxv D:20-96 [221595]
        Other proteins in same PDB: d4fxva2, d4fxvb2, d4fxvc2, d4fxvd2
        automated match to d2cpja1
    80. Domains for 4ljm:
      1. 2519670Domain d4ljma_: 4ljm A: [257840]
        automated match to d2rraa_
      2. 2519671Domain d4ljmb_: 4ljm B: [262951]
        automated match to d2mika_
    81. Domains for 4tlq:
      1. 2519674Domain d4tlqa_: 4tlq A: [279845]
        automated match to d2mika_
      2. 2519675Domain d4tlqb_: 4tlq B: [279846]
        automated match to d2mika_
    82. Domains for 5iqq:
      1. 2519665Domain d5iqqa_: 5iqq A: [317009]
        automated match to d1d8za_
        protein/RNA complex
      2. 2519666Domain d5iqqb_: 5iqq B: [316997]
        automated match to d1d8za_
        protein/RNA complex
      3. 2519667Domain d5iqqc_: 5iqq C: [317030]
        automated match to d1d8za_
        protein/RNA complex
      4. 2519668Domain d5iqqd_: 5iqq D: [317004]
        automated match to d1d8za_
        protein/RNA complex
      5. 2519669Domain d5iqqe_: 5iqq E: [316998]
        automated match to d1d8za_
        protein/RNA complex
    83. Domains for 5kwq:
      1. 2519687Domain d5kwqa1: 5kwq A:101-200 [338175]
        Other proteins in same PDB: d5kwqa3, d5kwqb3
        automated match to d2mpua_
      2. 2519688Domain d5kwqa2: 5kwq A:201-294 [338176]
        Other proteins in same PDB: d5kwqa3, d5kwqb3
        automated match to d2mpua_
      3. 2519689Domain d5kwqb1: 5kwq B:101-200 [338184]
        Other proteins in same PDB: d5kwqa3, d5kwqb3
        automated match to d2mpua_
      4. 2519690Domain d5kwqb2: 5kwq B:201-295 [338185]
        Other proteins in same PDB: d5kwqa3, d5kwqb3
        automated match to d2mpua_
    84. Domain for 5lxr:
    85. Domains for 5lxy:
      1. 2519678Domain d5lxya_: 5lxy A: [327224]
        automated match to d3ulha_
        protein/RNA complex; complexed with br
      2. 2519679Domain d5lxyb_: 5lxy B: [327241]
        automated match to d3ulha_
        protein/RNA complex; complexed with br
      3. 2519680Domain d5lxye_: 5lxy E: [327226]
        automated match to d3ulha_
        protein/RNA complex; complexed with br
      4. 2519681Domain d5lxyg_: 5lxy G: [327200]
        automated match to d3ulha_
        protein/RNA complex; complexed with br
      5. 2519682Domain d5lxyi_: 5lxy I: [327209]
        automated match to d3ulha_
        protein/RNA complex; complexed with br
      6. 2519683Domain d5lxyk_: 5lxy K: [327258]
        automated match to d3ulha_
        protein/RNA complex; complexed with br
      7. 2519684Domain d5lxym_: 5lxy M: [327253]
        automated match to d3ulha_
        protein/RNA complex; complexed with br
    86. Domain for 5o2v:
    87. Domain for 5obn:
    88. Domain for 5szw:
    89. Domains for 5tbx:
      1. 2519638Domain d5tbxa_: 5tbx A: [333019]
        Other proteins in same PDB: d5tbxb2
        automated match to d2mb0b_
        complexed with act, ni
      2. 2519639Domain d5tbxb1: 5tbx B:2-92 [332990]
        Other proteins in same PDB: d5tbxb2
        automated match to d2mb0b_
        complexed with act, ni
  7. 2519751Mouse (Mus musculus) [TaxId:10090] [226227] (6 PDB entries)
    1. Domain for 2dgo:
    2. Domain for 2dng:
    3. Domain for 2e5i:
    4. Domain for 2rne:
    5. Domain for 2xsf:
    6. Domain for 5x3y:
  8. 2519758Nematode (Caenorhabditis elegans) [TaxId:6239] [258940] (1 PDB entry)
  9. 2519760Norway rat (Rattus norvegicus) [TaxId:10116] [272199] (3 PDB entries)
    1. Domain for 2mqm:
    2. Domain for 2mqo:
    3. Domain for 2mqp:
  10. 2519764Plasmodium falciparum [TaxId:36329] [311778] (2 PDB entries)
    1. Domain for 2myf:
    2. Domain for 2n3l:
  11. 2519767Tobacco (Nicotiana tabacum) [TaxId:4097] [256225] (1 PDB entry)

More info for Protein automated matches from d.58.7.0: automated matches

Timeline for Protein automated matches from d.58.7.0: automated matches: