Lineage for Protein: automated matches

  1. Root: SCOPe 2.03
  2. 1336837Class c: Alpha and beta proteins (a/b) [51349] (147 folds)
  3. 1377621Fold c.61: PRTase-like [53270] (1 superfamily)
    core: 3 layers, a/b/a; mixed beta-sheet of 6 strands, order 321456; strand 3 is antiparallel to the rest
  4. 1377622Superfamily c.61.1: PRTase-like [53271] (3 families) (S)
  5. 1378000Family c.61.1.0: automated matches [191528] (1 protein)
    not a true family
  6. 1378001Protein automated matches [190891] (18 species)
    not a true protein

Species:

  1. 1378002Aquifex aeolicus [TaxId:63363] [188297] (1 PDB entry)
  2. 1378007Bacillus anthracis [TaxId:261594] [189450] (4 PDB entries)
    1. Domains for 3h83:
      1. 1378016Domain d3h83a_: 3h83 A: [210903]
        automated match to d1r3ub_
        complexed with po4, suc
      2. 1378017Domain d3h83b_: 3h83 B: [210904]
        automated match to d1r3ub_
        complexed with po4, suc
      3. 1378018Domain d3h83c_: 3h83 C: [210905]
        automated match to d1r3ub_
        complexed with po4, suc
      4. 1378019Domain d3h83d_: 3h83 D: [210906]
        automated match to d1r3ub_
        complexed with po4, suc
    2. Domains for 3hvu:
      1. 1378012Domain d3hvua_: 3hvu A: [211309]
        automated match to d1r3ub_
        complexed with mes, na
      2. 1378013Domain d3hvub_: 3hvu B: [211310]
        automated match to d1r3ub_
        complexed with mes, na
      3. 1378014Domain d3hvuc_: 3hvu C: [211311]
        automated match to d1r3ub_
        complexed with mes, na
      4. 1378015Domain d3hvud_: 3hvu D: [211312]
        automated match to d1r3ub_
        complexed with mes, na
    3. Domains for 3kb8:
      1. 1378020Domain d3kb8a_: 3kb8 A: [212268]
        automated match to d1r3ub_
        complexed with 5gp, gol, mg, po4, suc
      2. 1378021Domain d3kb8b_: 3kb8 B: [212269]
        automated match to d1r3ub_
        complexed with 5gp, gol, mg, po4, suc
      3. 1378022Domain d3kb8c_: 3kb8 C: [212270]
        automated match to d1r3ub_
        complexed with 5gp, gol, mg, po4, suc
      4. 1378023Domain d3kb8d_: 3kb8 D: [212271]
        automated match to d1r3ub_
        complexed with 5gp, gol, mg, po4, suc
    4. Domains for 3o7m:
      1. 1378008Domain d3o7ma_: 3o7m A: [182857]
        automated match to d1r3ub_
        complexed with bme, gol, so4
      2. 1378009Domain d3o7mb_: 3o7m B: [182858]
        automated match to d1r3ub_
        complexed with bme, gol, so4
      3. 1378010Domain d3o7mc_: 3o7m C: [182859]
        automated match to d1r3ub_
        complexed with bme, gol, so4
      4. 1378011Domain d3o7md_: 3o7m D: [182860]
        automated match to d1r3ub_
        complexed with bme, gol, so4
  3. 1378024Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [188318] (3 PDB entries)
    1. Domain for 2pry:
    2. Domains for 2prz:
      1. 1378027Domain d2prza_: 2prz A: [167253]
        automated match to d1lh0a_
        complexed with cl, omp
      2. 1378028Domain d2przb_: 2prz B: [167254]
        automated match to d1lh0a_
        complexed with cl, omp
      3. 1378029Domain d2przc_: 2prz C: [167255]
        automated match to d1lh0a_
        complexed with cl, omp
      4. 1378030Domain d2przd_: 2prz D: [167256]
        automated match to d1lh0a_
        complexed with cl, omp
    3. Domains for 2ps1:
      1. 1378025Domain d2ps1a_: 2ps1 A: [167257]
        automated match to d1lh0a_
        complexed with mg, oro, prp
      2. 1378026Domain d2ps1b_: 2ps1 B: [167258]
        automated match to d1lh0a_
        complexed with mg, oro, prp
  4. 1378032Burkholderia cenocepacia [TaxId:216591] [236647] (1 PDB entry)
  5. 1378034Burkholderia pseudomallei [TaxId:320372] [225468] (1 PDB entry)
  6. 1378041Escherichia coli [TaxId:562] [188368] (1 PDB entry)
  7. 1378046Escherichia coli [TaxId:83333] [225227] (1 PDB entry)
  8. 1378049Francisella tularensis [TaxId:119856] [225884] (1 PDB entry)
  9. 1378054Human (Homo sapiens) [TaxId:9606] [225156] (9 PDB entries)
    1. Domains for 2h06:
      1. 1378065Domain d2h06a1: 2h06 A:3-160 [204477]
        automated match to d2c4ka1
        complexed with so4
      2. 1378066Domain d2h06a2: 2h06 A:161-313 [204478]
        automated match to d2c4ka2
        complexed with so4
      3. 1378067Domain d2h06b1: 2h06 B:3-160 [204479]
        automated match to d2c4ka1
        complexed with so4
      4. 1378068Domain d2h06b2: 2h06 B:161-317 [204480]
        automated match to d2c4ka2
        complexed with so4
    2. Domains for 2h07:
      1. 1378073Domain d2h07a1: 2h07 A:3-160 [204481]
        automated match to d2c4ka1
        complexed with so4; mutant
      2. 1378074Domain d2h07a2: 2h07 A:161-313 [204482]
        automated match to d2c4ka2
        complexed with so4; mutant
      3. 1378075Domain d2h07b1: 2h07 B:3-160 [204483]
        automated match to d2c4ka1
        complexed with so4; mutant
      4. 1378076Domain d2h07b2: 2h07 B:161-317 [204484]
        automated match to d2c4ka2
        complexed with so4; mutant
    3. Domains for 2h08:
      1. 1378077Domain d2h08a1: 2h08 A:3-160 [204485]
        automated match to d2c4ka1
        complexed with so4; mutant
      2. 1378078Domain d2h08a2: 2h08 A:161-313 [204486]
        automated match to d2c4ka2
        complexed with so4; mutant
      3. 1378079Domain d2h08b1: 2h08 B:3-160 [204487]
        automated match to d2c4ka1
        complexed with so4; mutant
      4. 1378080Domain d2h08b2: 2h08 B:161-317 [204488]
        automated match to d2c4ka2
        complexed with so4; mutant
    4. Domains for 2hcr:
      1. 1378069Domain d2hcra1: 2hcr A:3-160 [204534]
        automated match to d2c4ka1
        complexed with amp, cd, so4
      2. 1378070Domain d2hcra2: 2hcr A:161-313 [204535]
        automated match to d2c4ka2
        complexed with amp, cd, so4
      3. 1378071Domain d2hcrb1: 2hcr B:3-160 [204536]
        automated match to d2c4ka1
        complexed with amp, cd, so4
      4. 1378072Domain d2hcrb2: 2hcr B:161-317 [204537]
        automated match to d2c4ka2
        complexed with amp, cd, so4
    5. Domains for 2ji4:
      1. 1378081Domain d2ji4a1: 2ji4 A:19-178 [205047]
        automated match to d2c4ka1
        complexed with cl
      2. 1378082Domain d2ji4a2: 2ji4 A:179-368 [205048]
        automated match to d2c4ka2
        complexed with cl
    6. Domains for 2wns:
      1. 1378055Domain d2wnsa_: 2wns A: [206910]
        automated match to d2aeea1
        complexed with cl, omp
      2. 1378056Domain d2wnsb_: 2wns B: [206911]
        automated match to d2aeea1
        complexed with cl, omp
    7. Domains for 3efh:
      1. 1378083Domain d3efha1: 3efh A:3-160 [209486]
        automated match to d2c4ka1
        complexed with so4
      2. 1378084Domain d3efha2: 3efh A:161-316 [209487]
        automated match to d2c4ka2
        complexed with so4
      3. 1378085Domain d3efhb1: 3efh B:3-160 [209488]
        automated match to d2c4ka1
        complexed with so4
      4. 1378086Domain d3efhb2: 3efh B:161-316 [209489]
        automated match to d2c4ka2
        complexed with so4
    8. Domains for 3s5j:
      1. 1378057Domain d3s5ja1: 3s5j A:3-160 [216213]
        automated match to d2c4ka1
        complexed with so4
      2. 1378058Domain d3s5ja2: 3s5j A:161-313 [216214]
        automated match to d2c4ka2
        complexed with so4
      3. 1378059Domain d3s5jb1: 3s5j B:3-160 [216215]
        automated match to d2c4ka1
        complexed with so4
      4. 1378060Domain d3s5jb2: 3s5j B:161-317 [216216]
        automated match to d2c4ka2
        complexed with so4
    9. Domains for 4f8e:
      1. 1378061Domain d4f8ea1: 4f8e A:2-160 [221084]
        automated match to d2c4ka1
        complexed with mg, so4; mutant
      2. 1378062Domain d4f8ea2: 4f8e A:161-316 [221085]
        automated match to d2c4ka2
        complexed with mg, so4; mutant
      3. 1378063Domain d4f8eb1: 4f8e B:3-160 [221086]
        automated match to d2c4ka1
        complexed with mg, so4; mutant
      4. 1378064Domain d4f8eb2: 4f8e B:161-317 [221087]
        automated match to d2c4ka2
        complexed with mg, so4; mutant
  10. 1378087Plasmodium falciparum [TaxId:5838] [226804] (2 PDB entries)
    1. Domains for 3ozf:
      1. 1378088Domain d3ozfa_: 3ozf A: [214601]
        automated match to d1qk3c_
        complexed with hpa, mg, po4, pop
      2. 1378089Domain d3ozfb_: 3ozf B: [214602]
        automated match to d1qk3c_
        complexed with hpa, mg, po4, pop
      3. 1378090Domain d3ozfc_: 3ozf C: [214603]
        automated match to d1qk3c_
        complexed with hpa, mg, po4, pop
      4. 1378091Domain d3ozfd_: 3ozf D: [214604]
        automated match to d1qk3c_
        complexed with hpa, mg, po4, pop
    2. Domains for 3ozg:
      1. 1378092Domain d3ozga_: 3ozg A: [214605]
        automated match to d1qk3c_
        complexed with mg, pop, ssi
      2. 1378093Domain d3ozgb_: 3ozg B: [214606]
        automated match to d1qk3c_
        complexed with mg, pop, ssi
      3. 1378094Domain d3ozgc_: 3ozg C: [214607]
        automated match to d1qk3c_
        complexed with mg, pop, ssi
      4. 1378095Domain d3ozgd_: 3ozg D: [214608]
        automated match to d1qk3c_
        complexed with mg, pop, ssi
  11. 1378096Rhodothermus marinus [TaxId:518766] [226752] (1 PDB entry)
  12. 1378101Shewanella pealeana [TaxId:398579] [226751] (1 PDB entry)
  13. 1378106Thermoanaerobacter pseudethanolicus [TaxId:340099] [224903] (1 PDB entry)
  14. 1378109Thermoplasma volcanium [TaxId:273116] [226149] (1 PDB entry)
  15. 1378114Thermoplasma volcanium [TaxId:50339] [226070] (3 PDB entries)
    1. Domains for 3lpn:
      1. 1378127Domain d3lpna1: 3lpn A:1-155 [212983]
        automated match to d1dkua1
        complexed with apc, so4
      2. 1378128Domain d3lpna2: 3lpn A:156-284 [212984]
        automated match to d1dkra2
        complexed with apc, so4
      3. 1378129Domain d3lpnb1: 3lpn B:1-155 [212985]
        automated match to d1dkua1
        complexed with apc, so4
      4. 1378130Domain d3lpnb2: 3lpn B:156-286 [212986]
        automated match to d1dkra2
        complexed with apc, so4
    2. Domains for 3lrt:
      1. 1378115Domain d3lrta1: 3lrt A:1-155 [212999]
        automated match to d1dkua1
        complexed with adp, so4
      2. 1378116Domain d3lrta2: 3lrt A:156-284 [213000]
        automated match to d1dkra2
        complexed with adp, so4
      3. 1378117Domain d3lrtb1: 3lrt B:1-155 [213001]
        automated match to d1dkua1
        complexed with adp, so4
      4. 1378118Domain d3lrtb2: 3lrt B:156-286 [213002]
        automated match to d1dkra2
        complexed with adp, so4
    3. Domains for 3mbi:
      1. 1378119Domain d3mbia1: 3mbi A:-1-155 [213178]
        automated match to d1dkrb1
        complexed with adp, hsx, mg, po4
      2. 1378120Domain d3mbia2: 3mbi A:156-285 [213179]
        automated match to d1dkua2
        complexed with adp, hsx, mg, po4
      3. 1378121Domain d3mbib1: 3mbi B:-1-155 [213180]
        automated match to d1dkrb1
        complexed with adp, hsx, mg, po4
      4. 1378122Domain d3mbib2: 3mbi B:156-285 [213181]
        automated match to d1dkua2
        complexed with adp, hsx, mg, po4
      5. 1378123Domain d3mbic1: 3mbi C:1-155 [213182]
        automated match to d1dkrb1
        complexed with adp, hsx, mg, po4
      6. 1378124Domain d3mbic2: 3mbi C:156-285 [213183]
        automated match to d1dkua2
        complexed with adp, hsx, mg, po4
      7. 1378125Domain d3mbid1: 3mbi D:1-155 [213184]
        automated match to d1dkrb1
        complexed with adp, hsx, mg, po4
      8. 1378126Domain d3mbid2: 3mbi D:156-285 [213185]
        automated match to d1dkua2
        complexed with adp, hsx, mg, po4
  16. 1378131Thermus thermophilus [TaxId:300852] [189206] (3 PDB entries)
    1. Domain for 3acb:
    2. Domain for 3acc:
    3. Domain for 3acd:
  17. 1378135Vibrio cholerae [TaxId:666] [226764] (1 PDB entry)
  18. 1378144Yersinia pseudotuberculosis [TaxId:273123] [227797] (1 PDB entry)

More info for Protein automated matches from c.61.1.0: automated matches

Timeline for Protein automated matches from c.61.1.0: automated matches: