Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2530962Class d: Alpha and beta proteins (a+b) [53931] (388 folds)
  3. 2565345Fold d.79: Bacillus chorismate mutase-like [55297] (9 superfamilies)
    core: beta-alpha-beta-alpha-beta(2); mixed beta-sheet: order: 1423, strand 4 is antiparallel to the rest
  4. 2566989Superfamily d.79.5: IpsF-like [69765] (2 families) (S)
    forms trimers with three closely packed beta-sheets; possible link between the YjgF-like (d.79.1) and 4'-phosphopantetheinyl transferase superfamilies (d.150.1)
  5. 2567130Family d.79.5.0: automated matches [191525] (1 protein)
    not a true family
  6. 2567131Protein automated matches [190884] (7 species)
    not a true protein

Species:

  1. 2567132Burkholderia cenocepacia [TaxId:216591] [235915] (3 PDB entries)
    1. Domains for 4c8e:
      1. 2567136Domain d4c8ea_: 4c8e A: [236299]
        automated match to d4c8gc_
        complexed with c5p, peg, so4, zn
      2. 2567137Domain d4c8eb_: 4c8e B: [236294]
        automated match to d4c8gc_
        complexed with c5p, peg, so4, zn
      3. 2567138Domain d4c8ec_: 4c8e C: [236298]
        automated match to d4c8gc_
        complexed with c5p, peg, so4, zn
    2. Domains for 4c8g:
      1. 2567139Domain d4c8ga_: 4c8g A: [236295]
        automated match to d4c8gc_
        complexed with c5p, mg, po4, zn
      2. 2567140Domain d4c8gb_: 4c8g B: [235917]
        automated match to d2pmpa_
        complexed with c5p, mg, po4, zn
      3. 2567141Domain d4c8gc_: 4c8g C: [235916]
        automated match to d2pmpa_
        complexed with c5p, mg, po4, zn
    3. Domains for 4c8i:
      1. 2567133Domain d4c8ia_: 4c8i A: [236300]
        automated match to d4c8gc_
        complexed with cit, po4, zn
      2. 2567134Domain d4c8ib_: 4c8i B: [236297]
        automated match to d4c8gc_
        complexed with cit, po4, zn
      3. 2567135Domain d4c8ic_: 4c8i C: [236296]
        automated match to d4c8gc_
        complexed with cit, po4, zn
  2. 2567142Burkholderia pseudomallei [TaxId:28450] [255823] (12 PDB entries)
    1. Domains for 3f0d:
      1. 2567143Domain d3f0da_: 3f0d A: [245994]
        automated match to d3re3a_
        complexed with zn
      2. 2567144Domain d3f0db_: 3f0d B: [245995]
        automated match to d3re3a_
        complexed with zn
      3. 2567145Domain d3f0dc_: 3f0d C: [245996]
        automated match to d3re3a_
        complexed with zn
      4. 2567146Domain d3f0dd_: 3f0d D: [245997]
        automated match to d3re3a_
        complexed with zn
      5. 2567147Domain d3f0de_: 3f0d E: [245998]
        automated match to d3re3a_
        complexed with zn
      6. 2567148Domain d3f0df_: 3f0d F: [245999]
        automated match to d3re3a_
        complexed with zn
    2. Domains for 3f0e:
      1. 2567167Domain d3f0ea_: 3f0e A: [246000]
        automated match to d3re3a_
        complexed with mg, zn
      2. 2567168Domain d3f0eb_: 3f0e B: [246001]
        automated match to d3re3a_
        complexed with mg, zn
      3. 2567169Domain d3f0ec_: 3f0e C: [246002]
        automated match to d3re3a_
        complexed with mg, zn
    3. Domains for 3f0f:
      1. 2567182Domain d3f0fa_: 3f0f A: [246003]
        automated match to d3re3a_
        complexed with c5p, gol, mg, zn
      2. 2567183Domain d3f0fb_: 3f0f B: [246004]
        automated match to d3re3a_
        complexed with c5p, gol, mg, zn
      3. 2567184Domain d3f0fc_: 3f0f C: [246005]
        automated match to d3re3a_
        complexed with c5p, gol, mg, zn
    4. Domains for 3f0g:
      1. 2567176Domain d3f0ga_: 3f0g A: [246006]
        automated match to d3re3a_
        complexed with c5p, zn
      2. 2567177Domain d3f0gb_: 3f0g B: [246007]
        automated match to d3re3a_
        complexed with c5p, zn
      3. 2567178Domain d3f0gc_: 3f0g C: [246008]
        automated match to d3re3a_
        complexed with c5p, zn
      4. 2567179Domain d3f0gd_: 3f0g D: [246009]
        automated match to d3re3a_
        complexed with c5p, zn
      5. 2567180Domain d3f0ge_: 3f0g E: [246010]
        automated match to d3re3a_
        complexed with c5p, zn
      6. 2567181Domain d3f0gf_: 3f0g F: [246011]
        automated match to d3re3a_
        complexed with c5p, zn
    5. Domains for 3ieq:
      1. 2567164Domain d3ieqa_: 3ieq A: [246905]
        automated match to d3re3a_
        complexed with c, cl, mg, zn
      2. 2567165Domain d3ieqb_: 3ieq B: [246906]
        automated match to d3re3a_
        complexed with c, cl, mg, zn
      3. 2567166Domain d3ieqc_: 3ieq C: [246907]
        automated match to d3re3a_
        complexed with c, cl, mg, zn
    6. Domains for 3iew:
      1. 2567170Domain d3iewa1: 3iew A:1-159 [246908]
        Other proteins in same PDB: d3iewa2
        automated match to d3re3a_
        complexed with cdp, ctp, gol, zn
      2. 2567171Domain d3iewb_: 3iew B: [246909]
        Other proteins in same PDB: d3iewa2
        automated match to d3re3a_
        complexed with cdp, ctp, gol, zn
      3. 2567172Domain d3iewc_: 3iew C: [246910]
        Other proteins in same PDB: d3iewa2
        automated match to d3re3a_
        complexed with cdp, ctp, gol, zn
    7. Domains for 3jvh:
      1. 2567152Domain d3jvha_: 3jvh A: [247061]
        automated match to d3re3a_
        complexed with gol, hhv, zn
      2. 2567153Domain d3jvhb_: 3jvh B: [247062]
        automated match to d3re3a_
        complexed with gol, hhv, zn
      3. 2567154Domain d3jvhc_: 3jvh C: [247063]
        automated match to d3re3a_
        complexed with gol, hhv, zn
    8. Domains for 3k14:
      1. 2567158Domain d3k14a_: 3k14 A: [247092]
        automated match to d3re3a_
        complexed with 535, act, cl, k, zn
      2. 2567159Domain d3k14b_: 3k14 B: [247093]
        automated match to d3re3a_
        complexed with 535, act, cl, k, zn
      3. 2567160Domain d3k14c_: 3k14 C: [247094]
        automated match to d3re3a_
        complexed with 535, act, cl, k, zn
    9. Domains for 3ke1:
      1. 2567173Domain d3ke1a_: 3ke1 A: [247143]
        automated match to d3re3a_
        complexed with 829, k, zn
      2. 2567174Domain d3ke1b_: 3ke1 B: [247144]
        automated match to d3re3a_
        complexed with 829, k, zn
      3. 2567175Domain d3ke1c_: 3ke1 C: [247145]
        automated match to d3re3a_
        complexed with 829, k, zn
    10. Domains for 3mbm:
      1. 2567161Domain d3mbma_: 3mbm A: [247630]
        automated match to d3re3a_
        complexed with 717, cyt, trs, zn
      2. 2567162Domain d3mbmb_: 3mbm B: [247631]
        automated match to d3re3a_
        complexed with 717, cyt, trs, zn
      3. 2567163Domain d3mbmc_: 3mbm C: [247632]
        automated match to d3re3a_
        complexed with 717, cyt, trs, zn
    11. Domains for 3q8h:
      1. 2567155Domain d3q8ha_: 3q8h A: [248805]
        automated match to d3re3a_
        complexed with ao9, edo, k, zn
      2. 2567156Domain d3q8hb_: 3q8h B: [248806]
        automated match to d3re3a_
        complexed with ao9, edo, k, zn
      3. 2567157Domain d3q8hc_: 3q8h C: [248807]
        automated match to d3re3a_
        complexed with ao9, edo, k, zn
    12. Domains for 5l03:
      1. 2567149Domain d5l03a_: 5l03 A: [341244]
        automated match to d3f0da_
        complexed with 6zb, zn
      2. 2567150Domain d5l03b_: 5l03 B: [341240]
        automated match to d3f0da_
        complexed with 6zb, zn
      3. 2567151Domain d5l03c_: 5l03 C: [341279]
        automated match to d3f0da_
        complexed with 6zb, zn
  3. 2567185Burkholderia pseudomallei [TaxId:320372] [255904] (9 PDB entries)
    1. Domains for 3k2x:
      1. 2567204Domain d3k2xa_: 3k2x A: [247104]
        automated match to d3re3a_
        complexed with cl, i5a, k, zn
      2. 2567205Domain d3k2xb_: 3k2x B: [247105]
        automated match to d3re3a_
        complexed with cl, i5a, k, zn
      3. 2567206Domain d3k2xc_: 3k2x C: [247106]
        automated match to d3re3a_
        complexed with cl, i5a, k, zn
    2. Domains for 3p0z:
      1. 2567207Domain d3p0za_: 3p0z A: [248398]
        automated match to d3re3a_
        complexed with cl, ctn, k, msr, zn
      2. 2567208Domain d3p0zb_: 3p0z B: [248399]
        automated match to d3re3a_
        complexed with cl, ctn, k, msr, zn
      3. 2567209Domain d3p0zc_: 3p0z C: [248400]
        automated match to d3re3a_
        complexed with cl, ctn, k, msr, zn
    3. Domains for 3p10:
      1. 2567192Domain d3p10a_: 3p10 A: [248401]
        automated match to d3re3a_
        complexed with cl, ctn, f69, k, zn
      2. 2567193Domain d3p10b_: 3p10 B: [248402]
        automated match to d3re3a_
        complexed with cl, ctn, f69, k, zn
      3. 2567194Domain d3p10c_: 3p10 C: [248403]
        automated match to d3re3a_
        complexed with cl, ctn, f69, k, zn
    4. Domains for 3qhd:
      1. 2567189Domain d3qhda_: 3qhd A: [248883]
        automated match to d3re3a_
        complexed with 795, cl, ctn, k, msr, zn
      2. 2567190Domain d3qhdb_: 3qhd B: [248884]
        automated match to d3re3a_
        complexed with 795, cl, ctn, k, msr, zn
      3. 2567191Domain d3qhdc_: 3qhd C: [248885]
        automated match to d3re3a_
        complexed with 795, cl, ctn, k, msr, zn
    5. Domains for 6mwf:
      1. 2567198Domain d6mwfa_: 6mwf A: [376469]
        Other proteins in same PDB: d6mwfc2
        automated match to d2pmpa_
        complexed with act, dms, sfy, zn
      2. 2567199Domain d6mwfb_: 6mwf B: [376500]
        Other proteins in same PDB: d6mwfc2
        automated match to d2pmpa_
        complexed with act, dms, sfy, zn
      3. 2567200Domain d6mwfc1: 6mwf C:1-159 [376505]
        Other proteins in same PDB: d6mwfc2
        automated match to d2pmpa_
        complexed with act, dms, sfy, zn
    6. Domains for 6mwi:
      1. 2567195Domain d6mwia_: 6mwi A: [376456]
        Other proteins in same PDB: d6mwib2, d6mwic2
        automated match to d2pmpa_
        complexed with act, dms, ezl, peg, zn
      2. 2567196Domain d6mwib1: 6mwi B:1-159 [376503]
        Other proteins in same PDB: d6mwib2, d6mwic2
        automated match to d2pmpa_
        complexed with act, dms, ezl, peg, zn
      3. 2567197Domain d6mwic1: 6mwi C:1-159 [376446]
        Other proteins in same PDB: d6mwib2, d6mwic2
        automated match to d2pmpa_
        complexed with act, dms, ezl, peg, zn
    7. Domains for 6mwj:
      1. 2567210Domain d6mwja1: 6mwj A:1-159 [376451]
        Other proteins in same PDB: d6mwja2, d6mwjb2, d6mwjc2
        automated match to d2pmpa_
        complexed with azm, dms, zn
      2. 2567211Domain d6mwjb1: 6mwj B:1-159 [376403]
        Other proteins in same PDB: d6mwja2, d6mwjb2, d6mwjc2
        automated match to d2pmpa_
        complexed with azm, dms, zn
      3. 2567212Domain d6mwjc1: 6mwj C:1-159 [376424]
        Other proteins in same PDB: d6mwja2, d6mwjb2, d6mwjc2
        automated match to d2pmpa_
        complexed with azm, dms, zn
    8. Domains for 6mwk:
      1. 2567201Domain d6mwka1: 6mwk A:1-159 [376430]
        Other proteins in same PDB: d6mwka2, d6mwkb2, d6mwkc2
        automated match to d2pmpa_
        complexed with dms, k4y, mg, mla, zn
      2. 2567202Domain d6mwkb1: 6mwk B:1-159 [376475]
        Other proteins in same PDB: d6mwka2, d6mwkb2, d6mwkc2
        automated match to d2pmpa_
        complexed with dms, k4y, mg, mla, zn
      3. 2567203Domain d6mwkc1: 6mwk C:1-159 [376437]
        Other proteins in same PDB: d6mwka2, d6mwkb2, d6mwkc2
        automated match to d2pmpa_
        complexed with dms, k4y, mg, mla, zn
    9. Domains for 6v3m:
      1. 2567186Domain d6v3ma1: 6v3m A:1-159 [395943]
        Other proteins in same PDB: d6v3ma2, d6v3mb2, d6v3mc2
        automated match to d2pmpa_
        complexed with dms, edo, mlt, qog, zn
      2. 2567187Domain d6v3mb1: 6v3m B:1-159 [395936]
        Other proteins in same PDB: d6v3ma2, d6v3mb2, d6v3mc2
        automated match to d2pmpa_
        complexed with dms, edo, mlt, qog, zn
      3. 2567188Domain d6v3mc1: 6v3m C:1-159 [395952]
        Other proteins in same PDB: d6v3ma2, d6v3mb2, d6v3mc2
        automated match to d2pmpa_
        complexed with dms, edo, mlt, qog, zn
  4. 2567213Francisella tularensis [TaxId:177416] [189938] (1 PDB entry)
  5. 2567218Plasmodium falciparum [TaxId:36329] [235918] (1 PDB entry)
  6. 2567220Plasmodium vivax [TaxId:126793] [188273] (1 PDB entry)
  7. 2567222Pseudomonas aeruginosa, PA01 [TaxId:208964] [272191] (1 PDB entry)

More info for Protein automated matches from d.79.5.0: automated matches

Timeline for Protein automated matches from d.79.5.0: automated matches: