Lineage for Protein: automated matches

  1. Root: SCOPe 2.08
  2. 2923792Class d: Alpha and beta proteins (a+b) [53931] (396 folds)
  3. 2957073Fold d.68: IF3-like [55199] (8 superfamilies)
    beta-alpha-beta-alpha-beta(2); 2 layers; mixed sheet 1243, strand 4 is antiparallel to the rest
  4. 2957090Superfamily d.68.2: EPT/RTPC-like [55205] (3 families) (S)
  5. 2957306Family d.68.2.0: automated matches [191521] (1 protein)
    not a true family
  6. 2957307Protein automated matches [190878] (15 species)
    not a true protein

Species:

  1. 2957308Acinetobacter baumannii [TaxId:400667] [313255] (1 PDB entry)
  2. 2957311Acinetobacter baumannii [TaxId:470] [327244] (1 PDB entry)
  3. 2957314Acinetobacter baumannii [TaxId:557600] [312620] (1 PDB entry)
  4. 2957317Anthrax bacillus (Bacillus anthracis) [TaxId:1392] [256082] (1 PDB entry)
  5. 2957322Aquifex aeolicus [TaxId:224324] [188240] (2 PDB entries)
    1. Domain for 2yvw:
    2. Domain for 3swg:
  6. 2957325Bacillus halodurans [TaxId:86665] [226131] (1 PDB entry)
  7. 2957330Campylobacter jejuni [TaxId:192222] [329345] (1 PDB entry)
  8. 2957333Coxiella burnetii [TaxId:227377] [189961] (4 PDB entries)
    1. Domains for 3roi:
      1. 2957338Domain d3roia1: 3roi A:1-435 [185081]
        Other proteins in same PDB: d3roia2
        automated match to d1rf4a_
        complexed with cl, so4
      2. 2957339Domain d3roib_: 3roi B: [185082]
        Other proteins in same PDB: d3roia2
        automated match to d1rf4a_
        complexed with cl, so4
    2. Domains for 3slh:
      1. 2957334Domain d3slha1: 3slh A:1-435 [216469]
        Other proteins in same PDB: d3slha2, d3slhb2, d3slhc2, d3slhd2
        automated match to d3roia_
        complexed with 1pe, bme, cl, edo, gpj, peg, pg4, pge, po4, s3p, skm
      2. 2957335Domain d3slhb1: 3slh B:1-438 [216470]
        Other proteins in same PDB: d3slha2, d3slhb2, d3slhc2, d3slhd2
        automated match to d4egrb_
        complexed with 1pe, bme, cl, edo, gpj, peg, pg4, pge, po4, s3p, skm
      3. 2957336Domain d3slhc1: 3slh C:1-436 [216471]
        Other proteins in same PDB: d3slha2, d3slhb2, d3slhc2, d3slhd2
        automated match to d4egrb_
        complexed with 1pe, bme, cl, edo, gpj, peg, pg4, pge, po4, s3p, skm
      4. 2957337Domain d3slhd1: 3slh D:1-438 [216472]
        Other proteins in same PDB: d3slha2, d3slhb2, d3slhc2, d3slhd2
        automated match to d4egrb_
        complexed with 1pe, bme, cl, edo, gpj, peg, pg4, pge, po4, s3p, skm
    3. Domains for 4egr:
      1. 2957340Domain d4egra1: 4egr A:1-436 [201839]
        Other proteins in same PDB: d4egra2, d4egrb2, d4egrc2, d4egrd2, d4egre2, d4egrf2
        automated match to d4egrb_
        complexed with pep, so4
      2. 2957341Domain d4egrb1: 4egr B:1-436 [195624]
        Other proteins in same PDB: d4egra2, d4egrb2, d4egrc2, d4egrd2, d4egre2, d4egrf2
        automated match to d3roia_
        complexed with pep, so4
      3. 2957342Domain d4egrc1: 4egr C:1-436 [201840]
        Other proteins in same PDB: d4egra2, d4egrb2, d4egrc2, d4egrd2, d4egre2, d4egrf2
        automated match to d4egrb_
        complexed with pep, so4
      4. 2957343Domain d4egrd1: 4egr D:1-436 [201841]
        Other proteins in same PDB: d4egra2, d4egrb2, d4egrc2, d4egrd2, d4egre2, d4egrf2
        automated match to d4egrb_
        complexed with pep, so4
      5. 2957344Domain d4egre1: 4egr E:1-436 [201842]
        Other proteins in same PDB: d4egra2, d4egrb2, d4egrc2, d4egrd2, d4egre2, d4egrf2
        automated match to d4egrb_
        complexed with pep, so4
      6. 2957345Domain d4egrf1: 4egr F:1-436 [201843]
        Other proteins in same PDB: d4egra2, d4egrb2, d4egrc2, d4egrd2, d4egre2, d4egrf2
        automated match to d4egrb_
        complexed with pep, so4
    4. Domain for 4znd:
  9. 2957347Coxiella burnetii [TaxId:777] [189727] (2 PDB entries)
    1. Domain for 3tr1:
    2. Domain for 4gfp:
  10. 2957350Listeria monocytogenes [TaxId:1639] [256048] (1 PDB entry)
  11. 2957352Peptoclostridium difficile [TaxId:272563] [377532] (4 PDB entries)
    1. Domain for 6q03:
    2. Domain for 6q0a:
    3. Domain for 6q0y:
    4. Domain for 6q11:
  12. 2957357Pneumococcus (Streptococcus pneumoniae) [TaxId:1313] [196937] (1 PDB entry)
  13. 2957359Streptococcus pneumoniae [TaxId:170187] [337266] (2 PDB entries)
    1. Domains for 5wi5:
      1. 2957362Domain d5wi5a_: 5wi5 A: [337293]
        automated match to d3vcya_
        complexed with 0v5, epu, mg
      2. 2957363Domain d5wi5b_: 5wi5 B: [337277]
        automated match to d3vcya_
        complexed with 0v5, epu, mg
      3. 2957364Domain d5wi5c_: 5wi5 C: [337267]
        automated match to d3vcya_
        complexed with 0v5, epu, mg
      4. 2957365Domain d5wi5d_: 5wi5 D: [337369]
        automated match to d3vcya_
        complexed with 0v5, epu, mg
    2. Domains for 6nkj:
      1. 2957360Domain d6nkja_: 6nkj A: [362435]
        automated match to d5wi5a_
        complexed with 0v5, cit, cl, edo
      2. 2957361Domain d6nkjb_: 6nkj B: [362313]
        automated match to d5wi5a_
        complexed with 0v5, cit, cl, edo
  14. 2957366Streptococcus pneumoniae [TaxId:373153] [196932] (1 PDB entry)
  15. 2957368Vibrio cholerae [TaxId:243277] [260004] (1 PDB entry)

More info for Protein automated matches from d.68.2.0: automated matches

Timeline for Protein automated matches from d.68.2.0: automated matches: