Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2045320Fold b.33: ISP domain [50021] (1 superfamily)
    consists of two all-beta subdomains: conserved small domain has a rubredoxin-like fold; larger domain consists of 6 beta-stands packed in either sandwich of two 3-stranded sheets or closed barrel (n=6; S=8)
  4. 2045321Superfamily b.33.1: ISP domain [50022] (4 families) (S)
  5. 2045322Family b.33.1.1: Rieske iron-sulfur protein (ISP) [50023] (9 protein domains)
  6. 2045402Protein automated matches [190874] (7 species)
    not a true protein

Species:

  1. 2045403Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [257477] (1 PDB entry)
  2. 2045405Chicken (Gallus gallus) [TaxId:9031] [260680] (8 PDB entries)
    1. Domains for 3h1h:
      1. 2045408Domain d3h1he2: 3h1h E:70-196 [262283]
        Other proteins in same PDB: d3h1ha1, d3h1ha2, d3h1hb1, d3h1hb2, d3h1hc1, d3h1hc2, d3h1hd1, d3h1hd2, d3h1he1, d3h1hf_, d3h1hg_, d3h1hh_, d3h1hj_, d3h1hn1, d3h1hn2, d3h1ho1, d3h1ho2, d3h1hp1, d3h1hp2, d3h1hq1, d3h1hq2, d3h1hr1, d3h1hs_, d3h1ht_, d3h1hu_, d3h1hw_
        automated match to d3l70e2
        complexed with bog, cdl, fes, gol, hec, hem, pee, unl, uq
      2. 2045409Domain d3h1hr2: 3h1h R:70-196 [262285]
        Other proteins in same PDB: d3h1ha1, d3h1ha2, d3h1hb1, d3h1hb2, d3h1hc1, d3h1hc2, d3h1hd1, d3h1hd2, d3h1he1, d3h1hf_, d3h1hg_, d3h1hh_, d3h1hj_, d3h1hn1, d3h1hn2, d3h1ho1, d3h1ho2, d3h1hp1, d3h1hp2, d3h1hq1, d3h1hq2, d3h1hr1, d3h1hs_, d3h1ht_, d3h1hu_, d3h1hw_
        automated match to d3l70e2
        complexed with bog, cdl, fes, gol, hec, hem, pee, unl, uq
    2. Domains for 3h1j:
      1. 2045406Domain d3h1je2: 3h1j E:70-196 [262287]
        Other proteins in same PDB: d3h1ja1, d3h1ja2, d3h1jb1, d3h1jb2, d3h1jc1, d3h1jc2, d3h1jd1, d3h1jd2, d3h1je1, d3h1jf_, d3h1jg_, d3h1jh_, d3h1jj_, d3h1jn1, d3h1jn2, d3h1jo1, d3h1jo2, d3h1jp1, d3h1jp2, d3h1jq1, d3h1jq2, d3h1jr1, d3h1js_, d3h1jt_, d3h1ju_, d3h1jw_
        automated match to d3l70e2
        complexed with cdl, fes, gol, hec, hem, pee, plc, sma, unl, uq
      2. 2045407Domain d3h1jr2: 3h1j R:70-196 [262289]
        Other proteins in same PDB: d3h1ja1, d3h1ja2, d3h1jb1, d3h1jb2, d3h1jc1, d3h1jc2, d3h1jd1, d3h1jd2, d3h1je1, d3h1jf_, d3h1jg_, d3h1jh_, d3h1jj_, d3h1jn1, d3h1jn2, d3h1jo1, d3h1jo2, d3h1jp1, d3h1jp2, d3h1jq1, d3h1jq2, d3h1jr1, d3h1js_, d3h1jt_, d3h1ju_, d3h1jw_
        automated match to d3l70e2
        complexed with cdl, fes, gol, hec, hem, pee, plc, sma, unl, uq
    3. Domains for 3l70:
      1. 2045416Domain d3l70e2: 3l70 E:70-196 [260681]
        Other proteins in same PDB: d3l70a1, d3l70a2, d3l70b1, d3l70b2, d3l70c1, d3l70c2, d3l70d1, d3l70d2, d3l70e1, d3l70f_, d3l70g_, d3l70h_, d3l70j_, d3l70n1, d3l70o1, d3l70o2, d3l70p1, d3l70p2, d3l70q1, d3l70q2, d3l70r1, d3l70s_, d3l70t_, d3l70u_, d3l70w_
        automated match to d1bcce1
        complexed with bog, cdl, fes, gol, hec, hem, jzv, pee, uq
      2. 2045417Domain d3l70r2: 3l70 R:70-196 [262292]
        Other proteins in same PDB: d3l70a1, d3l70a2, d3l70b1, d3l70b2, d3l70c1, d3l70c2, d3l70d1, d3l70d2, d3l70e1, d3l70f_, d3l70g_, d3l70h_, d3l70j_, d3l70n1, d3l70o1, d3l70o2, d3l70p1, d3l70p2, d3l70q1, d3l70q2, d3l70r1, d3l70s_, d3l70t_, d3l70u_, d3l70w_
        automated match to d3l70e2
        complexed with bog, cdl, fes, gol, hec, hem, jzv, pee, uq
    4. Domains for 3l71:
      1. 2045414Domain d3l71e2: 3l71 E:70-196 [262294]
        Other proteins in same PDB: d3l71a1, d3l71a2, d3l71b1, d3l71b2, d3l71c1, d3l71c2, d3l71d1, d3l71e1, d3l71f_, d3l71g_, d3l71h_, d3l71j_, d3l71n1, d3l71n2, d3l71o1, d3l71o2, d3l71p1, d3l71p2, d3l71q1, d3l71q2, d3l71r1, d3l71s_, d3l71t_, d3l71u_, d3l71w_
        automated match to d3l70e2
        complexed with azo, bog, cdl, fes, gol, hec, hem, pee, uq
      2. 2045415Domain d3l71r2: 3l71 R:70-196 [262296]
        Other proteins in same PDB: d3l71a1, d3l71a2, d3l71b1, d3l71b2, d3l71c1, d3l71c2, d3l71d1, d3l71e1, d3l71f_, d3l71g_, d3l71h_, d3l71j_, d3l71n1, d3l71n2, d3l71o1, d3l71o2, d3l71p1, d3l71p2, d3l71q1, d3l71q2, d3l71r1, d3l71s_, d3l71t_, d3l71u_, d3l71w_
        automated match to d3l70e2
        complexed with azo, bog, cdl, fes, gol, hec, hem, pee, uq
    5. Domains for 3l72:
      1. 2045420Domain d3l72e2: 3l72 E:70-196 [262298]
        Other proteins in same PDB: d3l72a1, d3l72a2, d3l72b1, d3l72b2, d3l72c1, d3l72c2, d3l72d1, d3l72d2, d3l72e1, d3l72f_, d3l72g_, d3l72h_, d3l72j_, d3l72n1, d3l72n2, d3l72o1, d3l72o2, d3l72p1, d3l72p2, d3l72q1, d3l72q2, d3l72r1, d3l72s_, d3l72t_, d3l72u_, d3l72w_
        automated match to d3l70e2
        complexed with bog, cdl, fes, gol, hec, hem, ikr, pee, uq
      2. 2045421Domain d3l72r2: 3l72 R:70-196 [262300]
        Other proteins in same PDB: d3l72a1, d3l72a2, d3l72b1, d3l72b2, d3l72c1, d3l72c2, d3l72d1, d3l72d2, d3l72e1, d3l72f_, d3l72g_, d3l72h_, d3l72j_, d3l72n1, d3l72n2, d3l72o1, d3l72o2, d3l72p1, d3l72p2, d3l72q1, d3l72q2, d3l72r1, d3l72s_, d3l72t_, d3l72u_, d3l72w_
        automated match to d3l70e2
        complexed with bog, cdl, fes, gol, hec, hem, ikr, pee, uq
    6. Domains for 3l73:
      1. 2045418Domain d3l73e2: 3l73 E:70-196 [262302]
        Other proteins in same PDB: d3l73a1, d3l73a2, d3l73b1, d3l73b2, d3l73c1, d3l73c2, d3l73d1, d3l73d2, d3l73e1, d3l73f_, d3l73g_, d3l73h_, d3l73j_, d3l73n1, d3l73n2, d3l73o1, d3l73o2, d3l73p1, d3l73p2, d3l73q1, d3l73q2, d3l73r1, d3l73s_, d3l73t_, d3l73u_, d3l73w_
        automated match to d3l70e2
        complexed with bog, cdl, fes, gol, hec, hem, jzz, pee, uq
      2. 2045419Domain d3l73r2: 3l73 R:70-196 [262304]
        Other proteins in same PDB: d3l73a1, d3l73a2, d3l73b1, d3l73b2, d3l73c1, d3l73c2, d3l73d1, d3l73d2, d3l73e1, d3l73f_, d3l73g_, d3l73h_, d3l73j_, d3l73n1, d3l73n2, d3l73o1, d3l73o2, d3l73p1, d3l73p2, d3l73q1, d3l73q2, d3l73r1, d3l73s_, d3l73t_, d3l73u_, d3l73w_
        automated match to d3l70e2
        complexed with bog, cdl, fes, gol, hec, hem, jzz, pee, uq
    7. Domains for 3l74:
      1. 2045412Domain d3l74e2: 3l74 E:70-196 [262306]
        Other proteins in same PDB: d3l74a1, d3l74a2, d3l74b1, d3l74b2, d3l74c1, d3l74c2, d3l74d1, d3l74d2, d3l74e1, d3l74f_, d3l74g_, d3l74h_, d3l74j_, d3l74n1, d3l74n2, d3l74o1, d3l74o2, d3l74p1, d3l74p2, d3l74q1, d3l74q2, d3l74r1, d3l74s_, d3l74t_, d3l74u_, d3l74w_
        automated match to d3l70e2
        complexed with azi, bog, cdl, fes, fmx, hec, hem, pee, unl, uq
      2. 2045413Domain d3l74r2: 3l74 R:70-196 [262308]
        Other proteins in same PDB: d3l74a1, d3l74a2, d3l74b1, d3l74b2, d3l74c1, d3l74c2, d3l74d1, d3l74d2, d3l74e1, d3l74f_, d3l74g_, d3l74h_, d3l74j_, d3l74n1, d3l74n2, d3l74o1, d3l74o2, d3l74p1, d3l74p2, d3l74q1, d3l74q2, d3l74r1, d3l74s_, d3l74t_, d3l74u_, d3l74w_
        automated match to d3l70e2
        complexed with azi, bog, cdl, fes, fmx, hec, hem, pee, unl, uq
    8. Domains for 3l75:
      1. 2045410Domain d3l75e2: 3l75 E:70-196 [262310]
        Other proteins in same PDB: d3l75a1, d3l75a2, d3l75b1, d3l75b2, d3l75c1, d3l75c2, d3l75d1, d3l75d2, d3l75e1, d3l75f_, d3l75g_, d3l75h_, d3l75j_, d3l75n1, d3l75n2, d3l75o1, d3l75o2, d3l75p1, d3l75p2, d3l75q1, d3l75q2, d3l75r1, d3l75s_, d3l75t_, d3l75u_, d3l75w_
        automated match to d3l70e2
        complexed with azi, bog, cdl, fes, fnm, hec, hem, pee, unl, uq
      2. 2045411Domain d3l75r2: 3l75 R:70-196 [262312]
        Other proteins in same PDB: d3l75a1, d3l75a2, d3l75b1, d3l75b2, d3l75c1, d3l75c2, d3l75d1, d3l75d2, d3l75e1, d3l75f_, d3l75g_, d3l75h_, d3l75j_, d3l75n1, d3l75n2, d3l75o1, d3l75o2, d3l75p1, d3l75p2, d3l75q1, d3l75q2, d3l75r1, d3l75s_, d3l75t_, d3l75u_, d3l75w_
        automated match to d3l70e2
        complexed with azi, bog, cdl, fes, fnm, hec, hem, pee, unl, uq
  3. 2045422Cow (Bos taurus) [TaxId:9913] [254898] (1 PDB entry)
  4. 2045424Mastigocladus laminosus [TaxId:83541] [255132] (4 PDB entries)
    1. Domains for 1um3:
      1. 2045428Domain d1um3d2: 1um3 D:46-179 [303147]
        Other proteins in same PDB: d1um3a_, d1um3b_, d1um3d1, d1um3f_, d1um3h_, d1um3n_, d1um3o_, d1um3q1, d1um3s_, d1um3t_, d1um3u_
        automated match to d1vf5d1
        complexed with bcr, cla, fes, hem, opc, pl9, tds
      2. 2045429Domain d1um3q2: 1um3 Q:46-179 [303153]
        Other proteins in same PDB: d1um3a_, d1um3b_, d1um3d1, d1um3f_, d1um3h_, d1um3n_, d1um3o_, d1um3q1, d1um3s_, d1um3t_, d1um3u_
        automated match to d1vf5d1
        complexed with bcr, cla, fes, hem, opc, pl9, tds
    2. Domain for 2e74:
    3. Domain for 4h13:
    4. Domain for 4pv1:
  5. 2045430Pseudomonas sp. [TaxId:306] [188227] (3 PDB entries)
    1. Domains for 2e4p:
      1. 2045433Domain d2e4pa_: 2e4p A: [163824]
        automated match to d1fqta_
        complexed with fes, so4, tre
      2. 2045434Domain d2e4pb_: 2e4p B: [163825]
        automated match to d1fqta_
        complexed with fes, so4, tre
    2. Domains for 2e4q:
      1. 2045431Domain d2e4qa_: 2e4q A: [163826]
        automated match to d1fqta_
        complexed with fes
      2. 2045432Domain d2e4qc_: 2e4q C: [163827]
        automated match to d1fqta_
        complexed with fes
    3. Domain for 2yvj:
  6. 2045436Thermosynechococcus elongatus [TaxId:197221] [195343] (1 PDB entry)
  7. 2045438Thermus thermophilus HB8 [TaxId:300852] [189085] (1 PDB entry)

More info for Protein automated matches from b.33.1.1: Rieske iron-sulfur protein (ISP)

Timeline for Protein automated matches from b.33.1.1: Rieske iron-sulfur protein (ISP):