Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2344607Class b: All beta proteins [48724] (178 folds)
  3. 2372079Fold b.22: TNF-like [49841] (1 superfamily)
    sandwich, 10 strands in 2 sheets; jelly-roll
  4. 2372080Superfamily b.22.1: TNF-like [49842] (2 families) (S)
  5. 2372417Family b.22.1.0: automated matches [191519] (1 protein)
    not a true family
  6. 2372418Protein automated matches [190873] (4 species)
    not a true protein

Species:

  1. 2372419Human (Homo sapiens) [TaxId:9606] [188225] (28 PDB entries)
    1. Domains for 2ka3:
      1. 2372478Domain d2ka3a_: 2ka3 A: [242434]
        automated match to d4f3ja_
      2. 2372479Domain d2ka3b_: 2ka3 B: [242435]
        automated match to d4f3ja_
      3. 2372480Domain d2ka3c_: 2ka3 C: [242436]
        automated match to d4f3ja_
    2. Domains for 2o0o:
      1. 2372475Domain d2o0oa_: 2o0o A: [243258]
        automated match to d2re9a_
        complexed with mg
      2. 2372476Domain d2o0ob_: 2o0o B: [243259]
        automated match to d2re9a_
        complexed with mg
      3. 2372477Domain d2o0oc_: 2o0o C: [243260]
        automated match to d2re9a_
        complexed with mg
    3. Domains for 2oii:
      1. 2372481Domain d2oiia_: 2oii A: [243340]
        automated match to d4f3ja_
      2. 2372482Domain d2oiib_: 2oii B: [243341]
        automated match to d4f3ja_
      3. 2372483Domain d2oiic_: 2oii C: [243342]
        automated match to d4f3ja_
    4. Domain for 2qe3:
    5. Domains for 2re9:
      1. 2372451Domain d2re9a_: 2re9 A: [168062]
        automated match to d1a8ma_
        complexed with gol, mg
      2. 2372452Domain d2re9b_: 2re9 B: [168063]
        automated match to d1a8ma_
        complexed with gol, mg
      3. 2372453Domain d2re9c_: 2re9 C: [168064]
        automated match to d1a8ma_
        complexed with gol, mg
    6. Domain for 2rjk:
    7. Domain for 2rjl:
    8. Domain for 3k51:
    9. Domain for 3mi8:
    10. Domains for 3ugn:
      1. 2372463Domain d3ugna_: 3ugn A: [306654]
        automated match to d2re9a_
        complexed with gol, nag, po4
      2. 2372464Domain d3ugnb_: 3ugn B: [306655]
        automated match to d2re9a_
        complexed with gol, nag, po4
      3. 2372465Domain d3ugnc_: 3ugn C: [306656]
        automated match to d2re9a_
        complexed with gol, nag, po4
    11. Domains for 4dou:
      1. 2372446Domain d4doua1: 4dou A:108-244 [251529]
        automated match to d1c3ha_
        complexed with ca, edo, gol, na
      2. 2372447Domain d4doua2: 4dou A:245-385 [251530]
        automated match to d1c3ha_
        complexed with ca, edo, gol, na
      3. 2372448Domain d4doua3: 4dou A:386-525 [251531]
        automated match to d1c3ha_
        complexed with ca, edo, gol, na
    12. Domains for 4en0:
      1. 2372468Domain d4en0a_: 4en0 A: [220674]
        automated match to d2re9a_
        complexed with gol, nag, po4
      2. 2372469Domain d4en0b_: 4en0 B: [220675]
        automated match to d2re9a_
        complexed with gol, nag, po4
      3. 2372470Domain d4en0c_: 4en0 C: [220676]
        automated match to d2re9a_
        complexed with gol, nag, po4
    13. Domain for 4f3j:
    14. Domains for 4j6g:
      1. 2372456Domain d4j6ga_: 4j6g A: [234929]
        automated match to d2re9a_
        complexed with cl, mg, nag
      2. 2372457Domain d4j6gb_: 4j6g B: [234930]
        automated match to d2re9a_
        complexed with cl, mg, nag
    15. Domains for 4kg8:
      1. 2372454Domain d4kg8a_: 4kg8 A: [240424]
        automated match to d4kg8b_
        mutant
      2. 2372455Domain d4kg8b_: 4kg8 B: [235163]
        automated match to d2re9a_
        mutant
    16. Domains for 4kgg:
      1. 2372460Domain d4kgga_: 4kgg A: [253265]
        automated match to d4kg8b_
        complexed with mg; mutant
      2. 2372461Domain d4kggb_: 4kgg B: [253266]
        automated match to d4kg8b_
        complexed with mg; mutant
    17. Domains for 4kgq:
      1. 2372449Domain d4kgqa_: 4kgq A: [224294]
        automated match to d1tnfa_
        complexed with mg; mutant
      2. 2372450Domain d4kgqb_: 4kgq B: [224295]
        automated match to d1tnfa_
        complexed with mg; mutant
    18. Domain for 4msv:
    19. Domains for 4nn0:
      1. 2372421Domain d4nn0a1: 4nn0 A:103-238 [238026]
        Other proteins in same PDB: d4nn0a2, d4nn0b2, d4nn0c2
        automated match to d4f3ja_
        complexed with act, edo, so4
      2. 2372422Domain d4nn0b1: 4nn0 B:103-242 [238025]
        Other proteins in same PDB: d4nn0a2, d4nn0b2, d4nn0c2
        automated match to d4f3ja_
        complexed with act, edo, so4
      3. 2372423Domain d4nn0c1: 4nn0 C:103-239 [238027]
        Other proteins in same PDB: d4nn0a2, d4nn0b2, d4nn0c2
        automated match to d4f3ja_
        complexed with act, edo, so4
    20. Domains for 4oul:
      1. 2372433Domain d4oula1: 4oul A:997-1127 [263348]
        Other proteins in same PDB: d4oula2
        automated match to d4oulb_
        complexed with ca, gol
      2. 2372434Domain d4oulb_: 4oul B: [260722]
        Other proteins in same PDB: d4oula2
        automated match to d2wnve_
        complexed with ca, gol
      3. 2372435Domain d4oulc_: 4oul C: [263349]
        Other proteins in same PDB: d4oula2
        automated match to d4oulb_
        complexed with ca, gol
      4. 2372436Domain d4ould_: 4oul D: [263350]
        Other proteins in same PDB: d4oula2
        automated match to d4oulb_
        complexed with ca, gol
      5. 2372437Domain d4oule_: 4oul E: [263351]
        Other proteins in same PDB: d4oula2
        automated match to d4oulb_
        complexed with ca, gol
      6. 2372438Domain d4oulf_: 4oul F: [263352]
        Other proteins in same PDB: d4oula2
        automated match to d4oulb_
        complexed with ca, gol
    21. Domain for 4oum:
    22. Domains for 4rsu:
      1. 2372440Domain d4rsua_: 4rsu A: [309540]
        Other proteins in same PDB: d4rsud1, d4rsud2, d4rsud3, d4rsue1, d4rsue2, d4rsue3, d4rsuf1, d4rsuf2, d4rsuf3, d4rsuj1, d4rsuj2, d4rsuj3, d4rsuk1, d4rsuk2, d4rsuk3, d4rsul1, d4rsul2
        automated match to d2re9a_
        complexed with cl, gol, nag
      2. 2372441Domain d4rsub_: 4rsu B: [309541]
        Other proteins in same PDB: d4rsud1, d4rsud2, d4rsud3, d4rsue1, d4rsue2, d4rsue3, d4rsuf1, d4rsuf2, d4rsuf3, d4rsuj1, d4rsuj2, d4rsuj3, d4rsuk1, d4rsuk2, d4rsuk3, d4rsul1, d4rsul2
        automated match to d2re9a_
        complexed with cl, gol, nag
      3. 2372442Domain d4rsuc_: 4rsu C: [309542]
        Other proteins in same PDB: d4rsud1, d4rsud2, d4rsud3, d4rsue1, d4rsue2, d4rsue3, d4rsuf1, d4rsuf2, d4rsuf3, d4rsuj1, d4rsuj2, d4rsuj3, d4rsuk1, d4rsuk2, d4rsuk3, d4rsul1, d4rsul2
        automated match to d2re9a_
        complexed with cl, gol, nag
      4. 2372443Domain d4rsug_: 4rsu G: [309552]
        Other proteins in same PDB: d4rsud1, d4rsud2, d4rsud3, d4rsue1, d4rsue2, d4rsue3, d4rsuf1, d4rsuf2, d4rsuf3, d4rsuj1, d4rsuj2, d4rsuj3, d4rsuk1, d4rsuk2, d4rsuk3, d4rsul1, d4rsul2
        automated match to d2re9a_
        complexed with cl, gol, nag
      5. 2372444Domain d4rsuh_: 4rsu H: [309553]
        Other proteins in same PDB: d4rsud1, d4rsud2, d4rsud3, d4rsue1, d4rsue2, d4rsue3, d4rsuf1, d4rsuf2, d4rsuf3, d4rsuj1, d4rsuj2, d4rsuj3, d4rsuk1, d4rsuk2, d4rsuk3, d4rsul1, d4rsul2
        automated match to d2re9a_
        complexed with cl, gol, nag
      6. 2372445Domain d4rsui_: 4rsu I: [309554]
        Other proteins in same PDB: d4rsud1, d4rsud2, d4rsud3, d4rsue1, d4rsue2, d4rsue3, d4rsuf1, d4rsuf2, d4rsuf3, d4rsuj1, d4rsuj2, d4rsuj3, d4rsuk1, d4rsuk2, d4rsuk3, d4rsul1, d4rsul2
        automated match to d2re9a_
        complexed with cl, gol, nag
    23. Domains for 5hkj:
      1. 2372424Domain d5hkja1: 5hkj A:2-136 [314774]
        automated match to d2wnvb_
        complexed with ca, nag
      2. 2372425Domain d5hkja2: 5hkj A:142-275 [314775]
        automated match to d2wnvb_
        complexed with ca, nag
      3. 2372426Domain d5hkja3: 5hkj A:276-408 [314776]
        automated match to d2wnvb_
        complexed with ca, nag
    24. Domains for 5hzf:
      1. 2372428Domain d5hzfa1: 5hzf A:3-136 [314840]
        automated match to d2wnvb_
        complexed with mg
      2. 2372429Domain d5hzfa2: 5hzf A:140-275 [314841]
        automated match to d2wnvb_
        complexed with mg
      3. 2372430Domain d5hzfa3: 5hzf A:276-407 [314842]
        automated match to d2wnvb_
        complexed with mg
    25. Domain for 5kc5:
    26. Domains for 5kc6:
      1. 2372471Domain d5kc6a1: 5kc6 A:59-193 [320106]
        Other proteins in same PDB: d5kc6a2, d5kc6b2, d5kc6c2
        automated match to d4qpyb_
        complexed with nag; mutant
      2. 2372472Domain d5kc6b1: 5kc6 B:59-193 [320099]
        Other proteins in same PDB: d5kc6a2, d5kc6b2, d5kc6c2
        automated match to d4qpyb_
        complexed with nag; mutant
      3. 2372473Domain d5kc6c1: 5kc6 C:59-193 [320158]
        Other proteins in same PDB: d5kc6a2, d5kc6b2, d5kc6c2
        automated match to d4qpyb_
        complexed with nag; mutant
    27. Domain for 5l19:
    28. Domain for 5l36:
  2. 2372484Mouse (Mus musculus) [TaxId:10090] [271469] (8 PDB entries)
    1. Domain for 4d7y:
    2. Domains for 4qpy:
      1. 2372501Domain d4qpya_: 4qpy A: [271470]
        automated match to d4ousa_
      2. 2372502Domain d4qpyb_: 4qpy B: [271471]
        automated match to d4ousa_
      3. 2372503Domain d4qpyc_: 4qpy C: [271477]
        automated match to d4ousa_
    3. Domains for 4qq2:
      1. 2372488Domain d4qq2a_: 4qq2 A: [271478]
        automated match to d2ka3a_
        complexed with cd
      2. 2372489Domain d4qq2b_: 4qq2 B: [271480]
        automated match to d2ka3a_
        complexed with cd
      3. 2372490Domain d4qq2c_: 4qq2 C: [271481]
        automated match to d2ka3a_
        complexed with cd
    4. Domain for 4qqh:
    5. Domains for 4qql:
      1. 2372492Domain d4qqla_: 4qql A: [271694]
        automated match to d2ka3a_
        complexed with mg
      2. 2372493Domain d4qqlb_: 4qql B: [271698]
        automated match to d2ka3a_
        complexed with mg
      3. 2372494Domain d4qqlc_: 4qql C: [271697]
        automated match to d2ka3a_
        complexed with mg
      4. 2372495Domain d4qqld_: 4qql D: [271699]
        automated match to d2ka3a_
        complexed with mg
      5. 2372496Domain d4qqle_: 4qql E: [271701]
        automated match to d2ka3a_
        complexed with mg
      6. 2372497Domain d4qqlf_: 4qql F: [271696]
        automated match to d2ka3a_
        complexed with mg
      7. 2372498Domain d4qqlg_: 4qql G: [271702]
        automated match to d2ka3a_
        complexed with mg
      8. 2372499Domain d4qqlh_: 4qql H: [271700]
        automated match to d2ka3a_
        complexed with mg
      9. 2372500Domain d4qqli_: 4qql I: [271695]
        automated match to d2ka3a_
        complexed with mg
    6. Domain for 4qqo:
    7. Domain for 4qqp:
    8. Domain for 5h4b:
  3. 2372505Norway rat (Rattus norvegicus) [TaxId:10116] [320477] (4 PDB entries)
    1. Domain for 5h48:
    2. Domains for 5h49:
      1. 2372511Domain d5h49a_: 5h49 A: [338889]
        automated match to d2wnvb_
        complexed with nag
      2. 2372512Domain d5h49b_: 5h49 B: [338892]
        automated match to d2wnvb_
        complexed with nag
      3. 2372513Domain d5h49c_: 5h49 C: [339049]
        automated match to d2wnvb_
        complexed with nag
    3. Domains for 5h4c:
      1. 2372508Domain d5h4ca_: 5h4c A: [338489]
        automated match to d4qpya_
        complexed with nag
      2. 2372509Domain d5h4cb_: 5h4c B: [338565]
        automated match to d4qpya_
        complexed with nag
      3. 2372510Domain d5h4cc_: 5h4c C: [338495]
        automated match to d4qpya_
        complexed with nag
    4. Domain for 5kwr:
  4. 2372514Zebrafish (Danio rerio) [TaxId:7955] [260723] (2 PDB entries)
    1. Domain for 4ous:
    2. Domains for 5hba:
      1. 2372516Domain d5hbaa_: 5hba A: [320065]
        automated match to d2wnvb_
        complexed with so4
      2. 2372517Domain d5hbab_: 5hba B: [319999]
        automated match to d2wnvb_
        complexed with so4
      3. 2372518Domain d5hbac_: 5hba C: [320022]
        automated match to d2wnvb_
        complexed with so4

More info for Protein automated matches from b.22.1.0: automated matches

Timeline for Protein automated matches from b.22.1.0: automated matches: