Lineage for Protein: automated matches

  1. Root: SCOPe 2.05
  2. 1949014Class e: Multi-domain proteins (alpha and beta) [56572] (68 folds)
  3. 1949285Fold e.3: beta-lactamase/transpeptidase-like [56600] (1 superfamily)
    contains a cluster of helices and an alpha+beta sandwich
  4. 1949286Superfamily e.3.1: beta-lactamase/transpeptidase-like [56601] (4 families) (S)
  5. 1950340Family e.3.1.0: automated matches [191512] (1 protein)
    not a true family
  6. 1950341Protein automated matches [190857] (31 species)
    not a true protein

Species:

  1. 1950342Acinetobacter baumannii [TaxId:470] [194613] (31 PDB entries)
    1. Domain for 2jc7:
    2. Domain for 3fv7:
    3. Domain for 3fyz:
    4. Domain for 3fzc:
    5. Domain for 3g4p:
    6. Domain for 3mbz:
    7. Domains for 3pae:
      1. 1950359Domain d3paea_: 3pae A: [214732]
        automated match to d1k38a_
        complexed with drw, so4; mutant
      2. 1950360Domain d3paeb_: 3pae B: [214733]
        automated match to d1k38a_
        complexed with drw, so4; mutant
    8. Domains for 3pag:
      1. 1950365Domain d3paga_: 3pag A: [214734]
        automated match to d1k38a_
        complexed with drw, so4; mutant
      2. 1950366Domain d3pagb_: 3pag B: [214735]
        automated match to d1k38a_
        complexed with drw, so4; mutant
    9. Domains for 3tsg:
      1. 1950349Domain d3tsga_: 3tsg A: [194618]
        automated match to d3ni9a_
        complexed with gol, iod
      2. 1950350Domain d3tsgb_: 3tsg B: [194619]
        automated match to d3ni9a_
        complexed with gol, iod
    10. Domains for 3v3r:
      1. 1950351Domain d3v3ra_: 3v3r A: [197447]
        automated match to d3ni9a_
        complexed with iod, na
      2. 1950352Domain d3v3rb_: 3v3r B: [194614]
        automated match to d3ni9a_
        complexed with iod, na
    11. Domain for 3znt:
    12. Domain for 4f94:
    13. Domains for 4jf4:
      1. 1950362Domain d4jf4a_: 4jf4 A: [228196]
        automated match to d4k0xa_
        complexed with edo, mer
      2. 1950363Domain d4jf4b_: 4jf4 B: [228198]
        automated match to d4k0xa_
        complexed with edo, mer
    14. Domain for 4jf5:
    15. Domain for 4jf6:
    16. Domain for 4k0w:
    17. Domain for 4k0x:
    18. Domains for 4net:
      1. 1950344Domain d4neta_: 4net A: [237673]
        automated match to d2wzza_
        complexed with gol, no3
      2. 1950345Domain d4netb_: 4net B: [237672]
        automated match to d2wzza_
        complexed with gol, no3
    19. Domain for 4oh0:
    20. Domains for 4qd4:
      1. 1950355Domain d4qd4a_: 4qd4 A: [268609]
        automated match to d4neta_
        complexed with cit, mes
      2. 1950356Domain d4qd4b_: 4qd4 B: [268608]
        automated match to d4neta_
        complexed with cit, mes
    21. Domain for 4u0t:
    22. Domains for 4u0x:
      1. 1950369Domain d4u0xa_: 4u0x A: [261164]
        automated match to d4neta_
        complexed with po4, zxm
      2. 1950370Domain d4u0xb_: 4u0x B: [261166]
        automated match to d4neta_
        complexed with po4, zxm
    23. Domain for 4wm9:
    24. Domain for 4x53:
    25. Domains for 4x55:
      1. 1950373Domain d4x55a_: 4x55 A: [270108]
        automated match to d4k0xa_
        complexed with ctj
      2. 1950374Domain d4x55b_: 4x55 B: [270109]
        automated match to d4k0xa_
        complexed with ctj
    26. Domain for 4x56:
    27. Domain for 4y0o:
    28. Domains for 4y0t:
      1. 1950378Domain d4y0ta_: 4y0t A: [280522]
        automated match to d4k0xa_
      2. 1950379Domain d4y0tb_: 4y0t B: [280523]
        automated match to d4k0xa_
      3. 1950380Domain d4y0tc_: 4y0t C: [280517]
        automated match to d4k0xa_
      4. 1950381Domain d4y0td_: 4y0t D: [280520]
        automated match to d4k0xa_
    29. Domains for 4y0u:
      1. 1950385Domain d4y0ua_: 4y0u A: [280518]
        automated match to d4k0xa_
        complexed with alp
      2. 1950386Domain d4y0ub_: 4y0u B: [280519]
        automated match to d4k0xa_
        complexed with alp
      3. 1950387Domain d4y0uc_: 4y0u C: [280516]
        automated match to d4k0xa_
        complexed with alp
      4. 1950388Domain d4y0ud_: 4y0u D: [280521]
        automated match to d4k0xa_
        complexed with alp
    30. Domain for 4zdx:
    31. Domain for 5boh:
  2. 1950389Atopobium parvulum [TaxId:521095] [237727] (1 PDB entry)
  3. 1950391Bacillus licheniformis [TaxId:1402] [254936] (1 PDB entry)
  4. 1950394Bacillus pumilus [TaxId:1408] [279437] (1 PDB entry)
  5. 1950397Bacillus subtilis [TaxId:224308] [278114] (1 PDB entry)
  6. 1950400Burkholderia cenocepacia [TaxId:216591] [278118] (1 PDB entry)
  7. 1950403Burkholderia pseudomallei [TaxId:272560] [256148] (2 PDB entries)
    1. Domain for 3w4o:
    2. Domain for 3w4p:
  8. 1950406Chromobacterium violaceum [TaxId:243365] [279743] (1 PDB entry)
  9. 1950408Enterobacter aerogenes [TaxId:548] [188190] (1 PDB entry)
  10. 1950410Enterobacter cloacae [TaxId:550] [271105] (3 PDB entries)
    1. Domains for 4s2l:
      1. 1950411Domain d4s2la_: 4s2l A: [275229]
        automated match to d3hbra_
        complexed with na
      2. 1950412Domain d4s2lb_: 4s2l B: [275228]
        automated match to d3hbra_
        complexed with na
    2. Domains for 4s2m:
      1. 1950414Domain d4s2ma_: 4s2m A: [275224]
        automated match to d3hbra_
        complexed with iod
      2. 1950415Domain d4s2mb_: 4s2m B: [275225]
        automated match to d3hbra_
        complexed with iod
      3. 1950416Domain d4s2mc_: 4s2m C: [275226]
        automated match to d3hbra_
        complexed with iod
      4. 1950417Domain d4s2md_: 4s2m D: [275227]
        automated match to d3hbra_
        complexed with iod
    3. Domain for 4xux:
  11. 1950418Escherichia coli [TaxId:562] [225496] (5 PDB entries)
    1. Domain for 3c5a:
    2. Domains for 3it9:
      1. 1950428Domain d3it9a1: 3it9 A:5-258 [232619]
        Other proteins in same PDB: d3it9a2, d3it9b2, d3it9c2, d3it9d2
        automated match to d1nj4a2
        complexed with so4, suc
      2. 1950429Domain d3it9b1: 3it9 B:8-258 [232622]
        Other proteins in same PDB: d3it9a2, d3it9b2, d3it9c2, d3it9d2
        automated match to d1nj4a2
        complexed with so4, suc
      3. 1950430Domain d3it9c1: 3it9 C:7-258 [232624]
        Other proteins in same PDB: d3it9a2, d3it9b2, d3it9c2, d3it9d2
        automated match to d1nj4a2
        complexed with so4, suc
      4. 1950431Domain d3it9d1: 3it9 D:3-258 [239359]
        Other proteins in same PDB: d3it9a2, d3it9b2, d3it9c2, d3it9d2
        automated match to d3it9a1
        complexed with so4, suc
    3. Domains for 3ita:
      1. 1950424Domain d3itaa1: 3ita A:5-258 [246950]
        Other proteins in same PDB: d3itaa2, d3itab2, d3itac2, d3itad2
        automated match to d3it9a1
        complexed with aic, aix, so4
      2. 1950425Domain d3itab1: 3ita B:6-258 [246952]
        Other proteins in same PDB: d3itaa2, d3itab2, d3itac2, d3itad2
        automated match to d3it9a1
        complexed with aic, aix, so4
      3. 1950426Domain d3itac1: 3ita C:6-258 [246954]
        Other proteins in same PDB: d3itaa2, d3itab2, d3itac2, d3itad2
        automated match to d3it9a1
        complexed with aic, aix, so4
      4. 1950427Domain d3itad1: 3ita D:3-258 [246956]
        Other proteins in same PDB: d3itaa2, d3itab2, d3itac2, d3itad2
        automated match to d3it9a1
        complexed with aic, aix, so4
    4. Domains for 3itb:
      1. 1950420Domain d3itba1: 3itb A:5-258 [246958]
        Other proteins in same PDB: d3itba2, d3itbb2, d3itbc2, d3itbd2
        automated match to d3it9a1
        complexed with so4, suc
      2. 1950421Domain d3itbb1: 3itb B:7-258 [246960]
        Other proteins in same PDB: d3itba2, d3itbb2, d3itbc2, d3itbd2
        automated match to d3it9a1
        complexed with so4, suc
      3. 1950422Domain d3itbc1: 3itb C:6-258 [246962]
        Other proteins in same PDB: d3itba2, d3itbb2, d3itbc2, d3itbd2
        automated match to d3it9a1
        complexed with so4, suc
      4. 1950423Domain d3itbd1: 3itb D:2-258 [246964]
        Other proteins in same PDB: d3itba2, d3itbb2, d3itbc2, d3itbd2
        automated match to d3it9a1
        complexed with so4, suc
    5. Domain for 4bjp:
  12. 1950433Francisella tularensis [TaxId:177416] [225993] (1 PDB entry)
  13. 1950436Fusobacterium nucleatum [TaxId:76857] [236129] (1 PDB entry)
  14. 1950441Geobacillus kaustophilus [TaxId:235909] [225277] (1 PDB entry)
  15. 1950446Haemophilus influenzae [TaxId:727] [231755] (1 PDB entry)
  16. 1950448Human (Homo sapiens) [TaxId:9606] [255788] (10 PDB entries)
    1. Domain for 3czd:
    2. Domain for 3voy:
    3. Domain for 3voz:
    4. Domain for 3vp0:
    5. Domain for 3vp1:
    6. Domain for 3vp2:
    7. Domain for 3vp3:
    8. Domain for 3vp4:
    9. Domains for 4bqm:
      1. 1950449Domain d4bqma_: 4bqm A: [265945]
        automated match to d4o7da_
        complexed with cl, edo
      2. 1950450Domain d4bqmb_: 4bqm B: [265946]
        automated match to d4o7da_
        complexed with cl, edo
    10. Domain for 4o7d:
  17. 1950460Klebsiella pneumoniae [195749] (2 PDB entries)
    1. Domains for 2qpn:
      1. 1950461Domain d2qpna_: 2qpn A: [198310]
        automated match to d2qpnb_
        complexed with so4
      2. 1950462Domain d2qpnb_: 2qpn B: [195750]
        automated match to d3ni9a_
        complexed with so4
    2. Domains for 4gog:
      1. 1950463Domain d4goga_: 4gog A: [222056]
        automated match to d2qpnb_
        complexed with im2, iod, na
      2. 1950464Domain d4gogb_: 4gog B: [222057]
        automated match to d2qpnb_
        complexed with im2, iod, na
  18. 1950465Klebsiella pneumoniae [TaxId:573] [225260] (11 PDB entries)
    1. Domains for 3hbr:
      1. 1950473Domain d3hbra_: 3hbr A: [210982]
        automated match to d1nrfa_
        complexed with edo
      2. 1950474Domain d3hbrb_: 3hbr B: [210983]
        automated match to d1nrfa_
        complexed with edo
      3. 1950475Domain d3hbrc_: 3hbr C: [210984]
        automated match to d1nrfa_
        complexed with edo
      4. 1950476Domain d3hbrd_: 3hbr D: [210985]
        automated match to d1nrfa_
        complexed with edo
    2. Domain for 3rxw:
    3. Domain for 3rxx:
    4. Domain for 3w8k:
    5. Domains for 4h8r:
      1. 1950466Domain d4h8ra_: 4h8r A: [222430]
        automated match to d3v3sa_
        complexed with im2, iod, na
      2. 1950467Domain d4h8rb_: 4h8r B: [222431]
        automated match to d3v3sa_
        complexed with im2, iod, na
    6. Domains for 4s2j:
      1. 1950494Domain d4s2ja_: 4s2j A: [269373]
        automated match to d1nrfa_
        complexed with nxl
      2. 1950495Domain d4s2jb_: 4s2j B: [269375]
        automated match to d1nrfa_
        complexed with nxl
      3. 1950496Domain d4s2jc_: 4s2j C: [269374]
        automated match to d1nrfa_
        complexed with nxl
      4. 1950497Domain d4s2jd_: 4s2j D: [269376]
        automated match to d1nrfa_
        complexed with nxl
    7. Domains for 4s2k:
      1. 1950481Domain d4s2ka_: 4s2k A: [269379]
        automated match to d1nrfa_
        complexed with nxl
      2. 1950482Domain d4s2kb_: 4s2k B: [269382]
        automated match to d1nrfa_
        complexed with nxl
      3. 1950483Domain d4s2kc_: 4s2k C: [269380]
        automated match to d1nrfa_
        complexed with nxl
      4. 1950484Domain d4s2kd_: 4s2k D: [269381]
        automated match to d1nrfa_
        complexed with nxl
    8. Domains for 4s2n:
      1. 1950477Domain d4s2na_: 4s2n A: [269385]
        automated match to d1nrfa_
        complexed with nxl
      2. 1950478Domain d4s2nb_: 4s2n B: [269387]
        automated match to d1nrfa_
        complexed with nxl
      3. 1950479Domain d4s2nc_: 4s2n C: [269386]
        automated match to d1nrfa_
        complexed with nxl
      4. 1950480Domain d4s2nd_: 4s2n D: [269390]
        automated match to d1nrfa_
        complexed with nxl
    9. Domains for 4s2p:
      1. 1950471Domain d4s2pa_: 4s2p A: [269383]
        automated match to d1nrfa_
      2. 1950472Domain d4s2pb_: 4s2p B: [269384]
        automated match to d1nrfa_
    10. Domain for 4wbg:
    11. Domains for 4wmc:
      1. 1950486Domain d4wmca_: 4wmc A: [264128]
        automated match to d4wmcb_
        complexed with co2, nxl
      2. 1950487Domain d4wmcb_: 4wmc B: [261482]
        automated match to d3hbra_
        complexed with co2, nxl
      3. 1950488Domain d4wmcc_: 4wmc C: [264129]
        automated match to d4wmcb_
        complexed with co2, nxl
      4. 1950489Domain d4wmcd_: 4wmc D: [264130]
        automated match to d4wmcb_
        complexed with co2, nxl
      5. 1950490Domain d4wmce_: 4wmc E: [264131]
        automated match to d4wmcb_
        complexed with co2, nxl
      6. 1950491Domain d4wmcf_: 4wmc F: [264132]
        automated match to d4wmcb_
        complexed with co2, nxl
      7. 1950492Domain d4wmcg_: 4wmc G: [264133]
        automated match to d4wmcb_
        complexed with co2, nxl
      8. 1950493Domain d4wmch_: 4wmc H: [264134]
        automated match to d4wmcb_
        complexed with co2, nxl
  19. 1950498Legionella pneumophila [TaxId:933093] [273357] (1 PDB entry)
  20. 1950500Mycobacterium abscessus [TaxId:36809] [275303] (1 PDB entry)
  21. 1950503Mycobacterium smegmatis [TaxId:246196] [278111] (1 PDB entry)
  22. 1950507Neisseria gonorrhoeae [TaxId:485] [225541] (2 PDB entries)
    1. Domains for 3equ:
      1. 1950508Domain d3equa2: 3equ A:238-573 [209615]
        Other proteins in same PDB: d3equa1, d3equb1
        automated match to d1qmea4
        complexed with gol, so4
      2. 1950509Domain d3equb2: 3equ B:238-573 [209617]
        Other proteins in same PDB: d3equa1, d3equb1
        automated match to d1qmea4
        complexed with gol, so4
    2. Domains for 3eqv:
      1. 1950510Domain d3eqva2: 3eqv A:238-573 [232088]
        Other proteins in same PDB: d3eqva1, d3eqvb1
        automated match to d3equa2
        complexed with gol, so4; mutant
      2. 1950511Domain d3eqvb2: 3eqv B:238-573 [232120]
        Other proteins in same PDB: d3eqva1, d3eqvb1
        automated match to d4kqoa2
        complexed with gol, so4; mutant
  23. 1950512Neisseria gonorrhoeae [TaxId:528353] [267993] (1 PDB entry)
  24. 1950515Pseudomonas aeruginosa [TaxId:1163392] [271727] (1 PDB entry)
  25. 1950517Pseudomonas aeruginosa [TaxId:1279008] [257305] (2 PDB entries)
    1. Domain for 4ool:
    2. Domain for 4oom:
  26. 1950520Pseudomonas aeruginosa [TaxId:208964] [196777] (16 PDB entries)
    1. Domain for 3oc2:
    2. Domain for 3ocl:
    3. Domain for 3ocn:
    4. Domain for 3pbn:
    5. Domain for 3pbo:
    6. Domain for 3pbq:
    7. Domain for 3pbr:
    8. Domain for 3pbs:
    9. Domain for 3pbt:
    10. Domain for 4gzb:
    11. Domains for 4kqo:
      1. 1950537Domain d4kqoa2: 4kqo A:222-562 [228778]
        Other proteins in same PDB: d4kqoa1, d4kqob1
        automated match to d3equa2
        complexed with cl, gol, imd, jpp
      2. 1950538Domain d4kqob2: 4kqo B:222-563 [235208]
        Other proteins in same PDB: d4kqoa1, d4kqob1
        automated match to d4kqoa2
        complexed with cl, gol, imd, jpp
    12. Domains for 4kqq:
      1. 1950531Domain d4kqqa2: 4kqq A:222-570 [235214]
        Other proteins in same PDB: d4kqqa1, d4kqqb1
        automated match to d4kqoa2
        complexed with cl, gol, imd, vpp
      2. 1950532Domain d4kqqb2: 4kqq B:222-570 [235210]
        Other proteins in same PDB: d4kqqa1, d4kqqb1
        automated match to d4kqoa2
        complexed with cl, gol, imd, vpp
    13. Domains for 4kqr:
      1. 1950529Domain d4kqra2: 4kqr A:222-570 [235212]
        Other proteins in same PDB: d4kqra1, d4kqrb1
        automated match to d4kqoa2
        complexed with cl, gol, imd, vpp
      2. 1950530Domain d4kqrb2: 4kqr B:222-570 [235216]
        Other proteins in same PDB: d4kqra1, d4kqrb1
        automated match to d4kqoa2
        complexed with cl, gol, imd, vpp
    14. Domain for 5df7:
    15. Domains for 5df8:
      1. 1950534Domain d5df8a2: 5df8 A:222-564 [280312]
        Other proteins in same PDB: d5df8a1, d5df8b1
        automated match to d4kqra2
        complexed with 59f, cl, gol
      2. 1950535Domain d5df8b2: 5df8 B:222-562 [280314]
        Other proteins in same PDB: d5df8a1, d5df8b1
        automated match to d4kqra2
        complexed with 59f, cl, gol
    16. Domain for 5df9:
  27. 1950541Pseudomonas aeruginosa [TaxId:287] [189201] (22 PDB entries)
    1. Domain for 2wzx:
    2. Domain for 2wzz:
    3. Domains for 3ni9:
      1. 1950572Domain d3ni9a_: 3ni9 A: [182313]
        automated match to d1iysa_
        complexed with epe
      2. 1950573Domain d3ni9b_: 3ni9 B: [182314]
        automated match to d1iysa_
        complexed with epe
    4. Domain for 3nia:
    5. Domain for 3s1y:
    6. Domain for 3s22:
    7. Domains for 3v3s:
      1. 1950561Domain d3v3sa_: 3v3s A: [197446]
        automated match to d3v3sb_
      2. 1950562Domain d3v3sb_: 3v3s B: [193349]
        automated match to d3ni9a_
    8. Domain for 4fsf:
    9. Domains for 4gnu:
      1. 1950542Domain d4gnua_: 4gnu A: [222046]
        automated match to d3v3sa_
        complexed with epe
      2. 1950543Domain d4gnub_: 4gnu B: [222047]
        automated match to d3v3sa_
        complexed with epe
    10. Domain for 4hef:
    11. Domain for 4l0l:
    12. Domains for 4mx4:
      1. 1950558Domain d4mx4a_: 4mx4 A: [266837]
        automated match to d4mxga_
        complexed with cl, edo, flc, ipa, pge
      2. 1950559Domain d4mx4b_: 4mx4 B: [266838]
        automated match to d4mxga_
        complexed with cl, edo, flc, ipa, pge
    13. Domains for 4mxb:
      1. 1950563Domain d4mxba_: 4mxb A: [266840]
        automated match to d4mxga_
        complexed with cl, im2
      2. 1950564Domain d4mxbb_: 4mxb B: [266841]
        automated match to d4mxga_
        complexed with cl, im2
      3. 1950565Domain d4mxbc_: 4mxb C: [266842]
        automated match to d4mxga_
        complexed with cl, im2
      4. 1950566Domain d4mxbd_: 4mxb D: [266843]
        automated match to d4mxga_
        complexed with cl, im2
    14. Domains for 4mxg:
      1. 1950554Domain d4mxga_: 4mxg A: [259818]
        automated match to d3niaa_
        complexed with cl, flc, mpd
      2. 1950555Domain d4mxgb_: 4mxg B: [263060]
        automated match to d4mxga_
        complexed with cl, flc, mpd
      3. 1950556Domain d4mxgc_: 4mxg C: [263061]
        automated match to d4mxga_
        complexed with cl, flc, mpd
      4. 1950557Domain d4mxgd_: 4mxg D: [263062]
        automated match to d4mxga_
        complexed with cl, flc, mpd
    15. Domains for 4mxh:
      1. 1950567Domain d4mxha_: 4mxh A: [263063]
        automated match to d4mxga_
        complexed with 3p7, cl, mox
      2. 1950568Domain d4mxhb_: 4mxh B: [260328]
        automated match to d3niaa_
        complexed with 3p7, cl, mox
    16. Domain for 4nk3:
    17. Domain for 4ooy:
    18. Domains for 4qu3:
      1. 1950548Domain d4qu3a_: 4qu3 A: [268629]
        automated match to d3v3sa_
        complexed with 1rg, ca, edo, iod
      2. 1950549Domain d4qu3b_: 4qu3 B: [268634]
        automated match to d3v3sa_
        complexed with 1rg, ca, edo, iod
    19. Domain for 4wyy:
    20. Domain for 4wz4:
    21. Domains for 4x68:
      1. 1950570Domain d4x68a_: 4x68 A: [274547]
        automated match to d3s1ya_
        complexed with ni, op0
      2. 1950571Domain d4x68b_: 4x68 B: [274550]
        automated match to d3s1ya_
        complexed with ni, op0
    22. Domain for 5df7:
  28. 1950577Pseudomonas aeruginosa [TaxId:652611] [271722] (2 PDB entries)
    1. Domain for 4wej:
    2. Domain for 4wel:
  29. 1950580Pseudomonas fluorescens [TaxId:294] [188382] (1 PDB entry)
  30. 1950582Pseudomonas syringae [TaxId:223283] [280374] (1 PDB entry)
  31. 1950587Staphylococcus aureus [TaxId:1280] [225094] (3 PDB entries)
    1. Domain for 2iwb:
    2. Domain for 2iwc:
    3. Domain for 2iwd:

More info for Protein automated matches from e.3.1.0: automated matches

Timeline for Protein automated matches from e.3.1.0: automated matches: