SCOPe 2.07: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.07
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
Fold c.111: Activating enzymes of the ubiquitin-like proteins [69571] (1 superfamily)
3 layers: a/b/a; mixed beta-sheet of 8 strands, order 32145678; strands 6 and 8 are antiparallel to the rest

Superfamily c.111.1: Activating enzymes of the ubiquitin-like proteins [69572] (3 families)

transfer adenylyl group to the C-terminal carboxyl group of the ubiquitin and MoaD/ThiS-related proteins
the ATP nucleotide-binding site is similar to that of the NAD-binding Rossmann-folds

Family c.111.1.0: automated matches [191511] (1 protein)
not a true family
Protein automated matches [190855] (2 species)
not a true protein

Species:

Escherichia coli K-12 [TaxId:83333] [188203] (1 PDB entry)
- Domains for 1zud:
  1. Domain d1zud1_: 1zud 1: [161376]
    Other proteins in same PDB: d1zud2_, d1zud4_
    automated match to d1jw9b_
    complexed with ca, na, zn
  2. Domain d1zud3_: 1zud 3: [161377]
    Other proteins in same PDB: d1zud2_, d1zud4_
    automated match to d1jw9b_
    complexed with ca, na, zn
Escherichia coli [TaxId:562] [188186] (2 PDB entries)
1. Domains for 1zfn:
  1. Domain d1zfna_: 1zfn A: [162452]
    automated match to d1jw9b_
    complexed with atp, zn
  2. Domain d1zfnb_: 1zfn B: [162453]
    automated match to d1jw9b_
    complexed with atp, zn
  3. Domain d1zfnc_: 1zfn C: [162454]
    automated match to d1jw9b_
    complexed with atp, zn
  4. Domain d1zfnd_: 1zfn D: [162455]
    automated match to d1jw9b_
    complexed with atp, zn
2. Domains for 1zkm:
  1. Domain d1zkma_: 1zkm A: [162496]
    Other proteins in same PDB: d1zkmd2
    automated match to d1jw9b_
    complexed with zn
  2. Domain d1zkmb_: 1zkm B: [162497]
    Other proteins in same PDB: d1zkmd2
    automated match to d1jw9b_
    complexed with zn
  3. Domain d1zkmc_: 1zkm C: [162498]
    Other proteins in same PDB: d1zkmd2
    automated match to d1jw9b_
    complexed with zn
  4. Domain d1zkmd1: 1zkm D:1-244 [162499]
    Other proteins in same PDB: d1zkmd2
    automated match to d1jw9b_
    complexed with zn

More info for Protein automated matches from c.111.1.0: automated matches

Timeline for Protein automated matches from c.111.1.0: automated matches:

Protein automated matches from c.111.1.0: automated matches first appeared in SCOPe 2.01
Protein automated matches from c.111.1.0: automated matches appears in SCOPe 2.06
Protein automated matches from c.111.1.0: automated matches appears in the current release, SCOPe 2.08