![]() | Class b: All beta proteins [48724] (180 folds) |
![]() | Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies) sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies |
![]() | Superfamily b.121.4: Positive stranded ssRNA viruses [88633] (10 families) ![]() |
![]() | Family b.121.4.1: Picornaviridae-like VP (VP1, VP2, VP3 and VP4) [88634] (10 proteins) the order of the chains N-VP0-VP3-VP1-C is as in the polyprotein; VP0 is cleaved later upon capsid assembly to VP4 and VP2 there is a different order in the shuffled genome of insect picorna-like proteins (Cricket paralysis virus) |
![]() | Protein automated matches [190854] (27 species) not a true protein |
![]() | Coxsackievirus a10 [TaxId:42769] [359980] (8 PDB entries) |
![]() | Domain d6aksc_: 6aks C: [362043] Other proteins in same PDB: d6aksa_, d6aksb_ automated match to d5yhqc_ complexed with sph |
![]() | Domain d6aktc_: 6akt C: [362045] Other proteins in same PDB: d6aktb_ automated match to d5yhqc_ |
![]() | Domain d6akuc_: 6aku C: [361997] Other proteins in same PDB: d6akub_ automated match to d5yhqc_ |
![]() | Domain d6iijc_: 6iij C: [359990] Other proteins in same PDB: d6iija_, d6iijb_ automated match to d5yhqc_ complexed with sph |
![]() | Domain d6iioc_: 6iio C: [359981] automated match to d5yhqc_ |
![]() | Domain d7bznc_: 7bzn C: [389748] Other proteins in same PDB: d7bzna_, d7bznb_ automated match to d5yhqc_ complexed with sph |
![]() | Domain d7bztc_: 7bzt C: [389721] Other proteins in same PDB: d7bzta_, d7bztb_ automated match to d5yhqc_ complexed with nag, sph |
![]() | Domain d7bzuc_: 7bzu C: [389788] Other proteins in same PDB: d7bzua_, d7bzub_ automated match to d5yhqc_ complexed with nag |
![]() | Coxsackievirus a16 (strain tainan/5079/98) [TaxId:231417] [277504] (1 PDB entry) |
![]() | Domain d5c8cc_: 5c8c C: [277505] Other proteins in same PDB: d5c8ca_ automated match to d5c4wc_ complexed with cl, k, ste |
![]() | Coxsackievirus a16 [TaxId:31704] [276274] (7 PDB entries) |
![]() | Domain d5abjc_: 5abj C: [276645] Other proteins in same PDB: d5abja_, d5abjb_ automated match to d5c4wc_ complexed with cl, na, ym2 |
![]() | Domain d5c4wc_: 5c4w C: [276275] Other proteins in same PDB: d5c4wa_, d5c4wb_ automated match to d3vbhc_ complexed with cl, k, na, sph |
![]() | Domain d5c9ac_: 5c9a C: [276278] Other proteins in same PDB: d5c9aa_ automated match to d3vbhc_ complexed with cl, k, sph |
![]() | Domain d6lhkc_: 6lhk C: [379819] Other proteins in same PDB: d6lhka_, d6lhkb_ automated match to d5c8cc_ complexed with sph |
![]() | Domain d6lhlc_: 6lhl C: [379801] Other proteins in same PDB: d6lhlb_ automated match to d5c8cc_ |
![]() | Domain d6lhoc_: 6lho C: [379792] Other proteins in same PDB: d6lhob_ automated match to d5c8cc_ |
![]() | Coxsackievirus a24 [TaxId:12089] [260750] (4 PDB entries) |
![]() | Domain d4q4v1_: 4q4v 1: [267264] automated match to d2plv1_ |
![]() | Domain d4q4v3_: 4q4v 3: [267265] automated match to d4q4y3_ |
![]() | Domain d4q4w1_: 4q4w 1: [267266] automated match to d2plv1_ complexed with ca, cl, hez |
![]() | Domain d4q4w3_: 4q4w 3: [267267] automated match to d4q4y3_ complexed with ca, cl, hez |
![]() | Domain d4q4x1_: 4q4x 1: [260751] automated match to d2plv1_ complexed with ca, cl, hez, na, sia |
![]() | Domain d4q4x3_: 4q4x 3: [263630] automated match to d4q4y3_ complexed with ca, cl, hez, na, sia |
![]() | Domain d4q4y1_: 4q4y 1: [263631] automated match to d2plv1_ complexed with ca, cl, hez, mg, myr, sia |
![]() | Domain d4q4y3_: 4q4y 3: [260752] automated match to d1hxs3_ complexed with ca, cl, hez, mg, myr, sia |
![]() | Coxsackievirus a6 [TaxId:86107] [339711] (2 PDB entries) |
![]() | Domain d5xs4c_: 5xs4 C: [339712] Other proteins in same PDB: d5xs4a1, d5xs4b_ automated match to d5c8cc_ |
![]() | Domain d5yhqc_: 5yhq C: [340797] automated match to d5c8cc_ |
![]() | Coxsackievirus b3 (strain nancy) [TaxId:103903] [402851] (1 PDB entry) |
![]() | Domain d6zcla_: 6zcl A: [402855] automated match to d1cov1_ complexed with fhk, myr |
![]() | Domain d6zclc_: 6zcl C: [402852] automated match to d1cov3_ complexed with fhk, myr |
![]() | Coxsackievirus b4 (strain e2) [TaxId:103905] [402895] (1 PDB entry) |
![]() | Domain d6zcka_: 6zck A: [402897] automated match to d4gb31_ complexed with myr, qfw |
![]() | Domain d6zckc_: 6zck C: [402896] automated match to d1cov3_ complexed with myr, qfw |
![]() | Echovirus e11 [TaxId:12078] [390813] (10 PDB entries) |
![]() | Domain d6la3a_: 6la3 A: [390860] automated match to d2x5ia_ complexed with sph |
![]() | Domain d6la3c_: 6la3 C: [390871] automated match to d1h8tc_ complexed with sph |
![]() | Domain d6la4a_: 6la4 A: [390864] automated match to d2x5ia_ complexed with sph |
![]() | Domain d6la4c_: 6la4 C: [390846] automated match to d1h8tc_ complexed with sph |
![]() | Domain d6la5a_: 6la5 A: [390844] Other proteins in same PDB: d6la5e1, d6la5e2 automated match to d2x5ia_ complexed with sph |
![]() | Domain d6la5c_: 6la5 C: [390865] Other proteins in same PDB: d6la5e1, d6la5e2 automated match to d1h8tc_ complexed with sph |
![]() | Domain d6la6a_: 6la6 A: [390834] Other proteins in same PDB: d6la6e1, d6la6e2, d6la6f_ automated match to d2x5ia_ |
![]() | Domain d6la6c_: 6la6 C: [390843] Other proteins in same PDB: d6la6e1, d6la6e2, d6la6f_ automated match to d1h8tc_ |
![]() | Domain d6la7a_: 6la7 A: [390849] Other proteins in same PDB: d6la7e1, d6la7e2, d6la7f_ automated match to d2x5ia_ |
![]() | Domain d6la7c_: 6la7 C: [390859] Other proteins in same PDB: d6la7e1, d6la7e2, d6la7f_ automated match to d1h8tc_ |
![]() | Domain d6laoa_: 6lao A: [390869] automated match to d2x5ia_ complexed with sph |
![]() | Domain d6laoc_: 6lao C: [390903] automated match to d1h8tc_ complexed with sph |
![]() | Domain d6lapc_: 6lap C: [390814] Other proteins in same PDB: d6lapa_ automated match to d1h8tc_ |
![]() | Domain d6lb1c_: 6lb1 C: [390872] Other proteins in same PDB: d6lb1a_ automated match to d1h8tc_ |
![]() | Domain d6lboc_: 6lbo C: [390840] Other proteins in same PDB: d6lboa_ automated match to d1h8tc_ |
![]() | Domain d6lbqc_: 6lbq C: [390881] Other proteins in same PDB: d6lbqa_ automated match to d1h8tc_ |
![]() | Echovirus e18 [TaxId:47506] [366473] (3 PDB entries) |
![]() | Domain d6hbga_: 6hbg A: [369097] automated match to d1upna_ complexed with gun, plm |
![]() | Domain d6hbgc_: 6hbg C: [369111] automated match to d2x5ic_ complexed with gun, plm |
![]() | Domain d6hbjc_: 6hbj C: [366474] automated match to d2x5ic_ |
![]() | Domain d7b5fa_: 7b5f A: [420629] Other proteins in same PDB: d7b5fh_ automated match to d1upna_ complexed with gun, plm |
![]() | Domain d7b5fc_: 7b5f C: [420652] Other proteins in same PDB: d7b5fh_ automated match to d2x5ic_ complexed with gun, plm |
![]() | Echovirus e3 [TaxId:47516] [420120] (1 PDB entry) |
![]() | Domain d7eah1_: 7eah 1: [418063] automated match to d1d4m1_ |
![]() | Domain d7eah3_: 7eah 3: [418064] automated match to d6la3c_ |
![]() | Echovirus e30 [TaxId:41846] [389842] (3 PDB entries) |
![]() | Domain d7c9sa_: 7c9s A: [390207] automated match to d1h8ta_ complexed with sph |
![]() | Domain d7c9sc_: 7c9s C: [389867] automated match to d1cov3_ complexed with sph |
![]() | Domain d7c9tc_: 7c9t C: [389896] automated match to d1cov3_ |
![]() | Echovirus e6 [TaxId:12062] [368839] (2 PDB entries) |
![]() | Domain d6ilka_: 6ilk A: [368840] Other proteins in same PDB: d6ilke1, d6ilke2, d6ilke3 automated match to d4gb31_ complexed with sph |
![]() | Domain d6ilkc_: 6ilk C: [368841] Other proteins in same PDB: d6ilke1, d6ilke2, d6ilke3 automated match to d1cov3_ complexed with sph |
![]() | Domain d6ilpa_: 6ilp A: [368842] automated match to d4gb31_ complexed with sph |
![]() | Domain d6ilpc_: 6ilp C: [368925] automated match to d1cov3_ complexed with sph |
![]() | Enterovirus e [TaxId:12064] [335693] (1 PDB entry) |
![]() | Domain d5osna_: 5osn A: [338626] automated match to d1bev1_ complexed with glu, k, osf, so4, sph |
![]() | Domain d5osnc_: 5osn C: [338631] automated match to d1bev3_ complexed with glu, k, osf, so4, sph |
![]() | Enterovirus f [TaxId:1330520] [379113] (3 PDB entries) |
![]() | Domain d6t40a_: 6t40 A: [391789] automated match to d5osna_ complexed with cl, cys, gly, gol, k, so4, ste |
![]() | Domain d6t40c_: 6t40 C: [391818] automated match to d5osnc_ complexed with cl, cys, gly, gol, k, so4, ste |
![]() | Domain d6t48a_: 6t48 A: [379114] automated match to d5osna_ complexed with cl, cys, gly, gol, gsh, k, so4, ste |
![]() | Domain d6t48c_: 6t48 C: [379158] automated match to d5osnc_ complexed with cl, cys, gly, gol, gsh, k, so4, ste |
![]() | Domain d6t4ca_: 6t4c A: [379134] automated match to d5osna_ complexed with gol, gsh, k, so4, ste |
![]() | Domain d6t4cc_: 6t4c C: [379116] automated match to d5osnc_ complexed with gol, gsh, k, so4, ste |
![]() | Foot-and-mouth disease virus - type a [TaxId:12111] [196861] (4 PDB entries) |
![]() | Domain d4gh4a_: 4gh4 A: [252214] automated match to d4iv1a_ |
![]() | Domain d4gh4c_: 4gh4 C: [252215] automated match to d1fmd3_ |
![]() | Domain d4iv1a_: 4iv1 A: [223403] automated match to d4iv3a_ |
![]() | Domain d4iv1c_: 4iv1 C: [223404] automated match to d4iv3c_ |
![]() | Domain d4iv3a_: 4iv3 A: [196862] automated match to d1zba1_ |
![]() | Domain d4iv3c_: 4iv3 C: [196863] automated match to d1zba3_ |
![]() | Domain d5d8aa_: 5d8a A: [277131] automated match to d1fmd1_ |
![]() | Domain d5d8ac_: 5d8a C: [277140] automated match to d4iv1c_ |
![]() | Foot-and-mouth disease virus - type o [TaxId:12118] [335439] (3 PDB entries) |
![]() | Domain d5ne43_: 5ne4 3: [335440] automated match to d1qqp3_ |
![]() | Domain d5nem1_: 5nem 1: [335766] Other proteins in same PDB: d5nema1, d5nema2 automated match to d1qqp1_ complexed with ca, man, nag |
![]() | Domain d5nem3_: 5nem 3: [335685] Other proteins in same PDB: d5nema1, d5nema2 automated match to d1qqp3_ complexed with ca, man, nag |
![]() | Domain d7eno1_: 7eno 1: [405266] automated match to d1fmd1_ mutant |
![]() | Domain d7eno3_: 7eno 3: [405300] automated match to d5neu3_ mutant |
![]() | Foot-and-mouth disease virus [TaxId:12110] [188180] (9 PDB entries) |
![]() | Domain d1zba1_: 1zba 1: [162437] automated match to d1qqp1_ |
![]() | Domain d1zba3_: 1zba 3: [162438] automated match to d1bbt3_ |
![]() | Domain d1zbe1_: 1zbe 1: [241128] automated match to d1fmd1_ |
![]() | Domain d1zbe3_: 1zbe 3: [241129] automated match to d1fmd3_ |
![]() | Domain d5ne41_: 5ne4 1: [335495] automated match to d1fmd1_ |
![]() | Domain d5neda_: 5ned A: [335663] automated match to d1fmd1_ |
![]() | Domain d5nedc_: 5ned C: [335661] automated match to d1qqp3_ |
![]() | Domain d5nej1_: 5nej 1: [335683] automated match to d1fmd1_ |
![]() | Domain d5nej3_: 5nej 3: [335671] automated match to d1qqp3_ |
![]() | Domain d5ner1_: 5ner 1: [335672] Other proteins in same PDB: d5nera1, d5nera2 automated match to d1qqp1_ complexed with ca, man, nag |
![]() | Domain d5ner3_: 5ner 3: [335678] Other proteins in same PDB: d5nera1, d5nera2 automated match to d1qqp3_ complexed with ca, man, nag |
![]() | Domain d5net1_: 5net 1: [335673] Other proteins in same PDB: d5neta1, d5neta2 automated match to d1qqp1_ complexed with ca, man, nag |
![]() | Domain d5net3_: 5net 3: [335707] Other proteins in same PDB: d5neta1, d5neta2 automated match to d1qqp3_ complexed with ca, man, nag |
![]() | Domain d5neu1_: 5neu 1: [335656] Other proteins in same PDB: d5neua1, d5neua2 automated match to d1qqp1_ complexed with ca, mg |
![]() | Domain d5neu3_: 5neu 3: [335682] Other proteins in same PDB: d5neua1, d5neua2 automated match to d1qqp3_ complexed with ca, mg |
![]() | Domain d7dsta_: 7dst A: [398892] Other proteins in same PDB: d7dste_ automated match to d5nej1_ |
![]() | Domain d7dstc_: 7dst C: [398938] Other proteins in same PDB: d7dste_ automated match to d1fmd3_ |
![]() | Foot-and-mouth disease virus [TaxId:12122] [255673] (1 PDB entry) |
![]() | Domain d2wzr3_: 2wzr 3: [244363] Other proteins in same PDB: d2wzr1_ automated match to d1fmd3_ |
![]() | Human coxsackievirus B3 [TaxId:12072] [194627] (1 PDB entry) |
![]() | Domain d4gb31_: 4gb3 1: [194628] Other proteins in same PDB: d4gb33_ automated match to d1cov1_ complexed with myr, plm |
![]() | Human echovirus 7 [TaxId:46018] [255678] (1 PDB entry) |
![]() | Domain d2x5ia_: 2x5i A: [244422] automated match to d1cov1_ complexed with dao |
![]() | Domain d2x5ic_: 2x5i C: [244423] automated match to d1cov3_ complexed with dao |
![]() | Human enterovirus 71 [TaxId:39054] [195913] (16 PDB entries) |
![]() | Domain d3vbfc_: 3vbf C: [195914] Other proteins in same PDB: d3vbfa_, d3vbfb_ automated match to d1bev3_ complexed with amp, cl, k, na, sph |
![]() | Domain d3vbhc_: 3vbh C: [217748] Other proteins in same PDB: d3vbha_, d3vbhb_ automated match to d3vbfc_ complexed with cl, k, na, sph |
![]() | Domain d3zfec_: 3zfe C: [196803] Other proteins in same PDB: d3zfea_, d3zfeb_ automated match to d1bev3_ complexed with cl, na, sph |
![]() | Domain d4cdqc_: 4cdq C: [236692] Other proteins in same PDB: d4cdqa_, d4cdqb_ automated match to d3vbfc_ complexed with 7vr, na |
![]() | Domain d4cduc_: 4cdu C: [236697] Other proteins in same PDB: d4cdua_, d4cdub_ automated match to d3vbfc_ complexed with cl, na, ym2 |
![]() | Domain d4cdwc_: 4cdw C: [236693] Other proteins in same PDB: d4cdwa_, d4cdwb_ automated match to d3vbfc_ complexed with na, vr2 |
![]() | Domain d4cdxc_: 4cdx C: [236696] Other proteins in same PDB: d4cdxa_, d4cdxb_ automated match to d3vbfc_ complexed with jf0, na |
![]() | Domain d4cewc_: 4cew C: [236699] Other proteins in same PDB: d4cewa_, d4cewb_ automated match to d3vbfc_ complexed with 7j5 |
![]() | Domain d4ceyc_: 4cey C: [236698] Other proteins in same PDB: d4ceya_, d4ceyb_ automated match to d3vbfc_ complexed with 906, na |
![]() | Domain d4rqpb_: 4rqp B: [261955] Other proteins in same PDB: d4rqpc_, d4rqpg_, d4rqpk_, d4rqpo_ automated match to d3vbhc_ |
![]() | Domain d4rqpf_: 4rqp F: [261954] Other proteins in same PDB: d4rqpc_, d4rqpg_, d4rqpk_, d4rqpo_ automated match to d3vbhc_ |
![]() | Domain d4rqpj_: 4rqp J: [261957] Other proteins in same PDB: d4rqpc_, d4rqpg_, d4rqpk_, d4rqpo_ automated match to d3vbhc_ |
![]() | Domain d4rqpn_: 4rqp N: [261961] Other proteins in same PDB: d4rqpc_, d4rqpg_, d4rqpk_, d4rqpo_ automated match to d3vbhc_ |
![]() | Domain d4rqpr_: 4rqp R: [261966] Other proteins in same PDB: d4rqpc_, d4rqpg_, d4rqpk_, d4rqpo_ automated match to d3vbhc_ |
![]() | Domain d4rr3b_: 4rr3 B: [267406] automated match to d3vbhc_ |
![]() | Domain d4rr3f_: 4rr3 F: [267407] automated match to d3vbhc_ |
![]() | Domain d4rr3j_: 4rr3 J: [267408] automated match to d3vbhc_ |
![]() | Domain d4rr3n_: 4rr3 N: [267409] automated match to d3vbhc_ |
![]() | Domain d4rr3r_: 4rr3 R: [267410] automated match to d3vbhc_ |
![]() | Domain d6uh1c_: 6uh1 C: [378493] Other proteins in same PDB: d6uh1a_, d6uh1b_ automated match to d3zfec_ complexed with sph |
![]() | Domain d6uh6c_: 6uh6 C: [378491] Other proteins in same PDB: d6uh6a_, d6uh6b_ automated match to d3zfec_ complexed with sph |
![]() | Domain d6uh7c_: 6uh7 C: [378500] Other proteins in same PDB: d6uh7a_, d6uh7b_ automated match to d3zfec_ complexed with sph |
![]() | Human poliovirus 3 [TaxId:12086] [397993] (1 PDB entry) |
![]() | Domain d6z6w3_: 6z6w 3: [397994] automated match to d1pov3_ complexed with sph |
![]() | Human rhinovirus 14 [TaxId:12131] [258112] (4 PDB entries) |
![]() | Domain d4pdwa_: 4pdw A: [258113] automated match to d1k5ma_ complexed with 2xk, gol |
![]() | Domain d4pdwc_: 4pdw C: [258114] automated match to d1rhi3_ complexed with 2xk, gol |
![]() | Domain d5w3ob_: 5w3o B: [336729] Other proteins in same PDB: d5w3od_, d5w3oe_ automated match to d1rhi3_ |
![]() | Domain d7bg71_: 7bg7 1: [404483] Other proteins in same PDB: d7bg73_ automated match to d1k5ma_ |
![]() | Domain d7nuq1_: 7nuq 1: [406049] Other proteins in same PDB: d7nuq3_ automated match to d1k5ma_ |
![]() | Human rhinovirus 2 [TaxId:12130] [256100] (1 PDB entry) |
![]() | Domain d3tn93_: 3tn9 3: [249961] automated match to d1aym3_ |
![]() | Human rhinovirus a serotype 89 (strain 41467-gallo) [TaxId:650130] [373881] (1 PDB entry) |
![]() | Domain d6sk7c_: 6sk7 C: [373882] Other proteins in same PDB: d6sk7a_ automated match to d1aym3_ |
![]() | Saffold virus [TaxId:434309] [318368] (2 PDB entries) |
![]() | Domain d5cfca_: 5cfc A: [318440] automated match to d1tme1_ |
![]() | Domain d5cfcb_: 5cfc B: [318369] automated match to d1tmf3_ |
![]() | Domain d5cfda_: 5cfd A: [318593] automated match to d1tme1_ |
![]() | Domain d5cfdb_: 5cfd B: [318483] automated match to d1tmf3_ |
![]() | Coxsackievirus b5 [TaxId:12074] [422596] (1 PDB entry) |
![]() | Domain d7wl33_: 7wl3 3: [422597] Other proteins in same PDB: d7wl31_ automated match to d1oopc_ |
Timeline for Protein automated matches from b.121.4.1: Picornaviridae-like VP (VP1, VP2, VP3 and VP4):