Lineage for Protein: automated matches

  1. Root: SCOPe 2.08
  2. 2739516Class b: All beta proteins [48724] (180 folds)
  3. 2821496Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
    sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
    characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
  4. 2821778Superfamily b.121.4: Positive stranded ssRNA viruses [88633] (10 families) (S)
  5. 2821779Family b.121.4.1: Picornaviridae-like VP (VP1, VP2, VP3 and VP4) [88634] (10 proteins)
    the order of the chains N-VP0-VP3-VP1-C is as in the polyprotein; VP0 is cleaved later upon capsid assembly to VP4 and VP2
    there is a different order in the shuffled genome of insect picorna-like proteins (Cricket paralysis virus)
  6. 2822070Protein automated matches [190854] (27 species)
    not a true protein

Species:

  1. 2822071Coxsackievirus a10 [TaxId:42769] [359980] (8 PDB entries)
    1. Domain for 6aks:
    2. Domain for 6akt:
    3. Domain for 6aku:
    4. Domain for 6iij:
    5. Domain for 6iio:
    6. Domain for 7bzn:
    7. Domain for 7bzt:
    8. Domain for 7bzu:
  2. 2822080Coxsackievirus a16 (strain tainan/5079/98) [TaxId:231417] [277504] (1 PDB entry)
  3. 2822082Coxsackievirus a16 [TaxId:31704] [276274] (7 PDB entries)
    1. Domain for 5abj:
    2. Domain for 5c4w:
    3. Domain for 5c9a:
    4. Domain for 6lhk:
    5. Domain for 6lhl:
    6. Domain for 6lho:
    7. Domain for 6lhq:
  4. 2822090Coxsackievirus a24 [TaxId:12089] [260750] (4 PDB entries)
    1. Domains for 4q4v:
      1. 2822097Domain d4q4v1_: 4q4v 1: [267264]
        automated match to d2plv1_
      2. 2822098Domain d4q4v3_: 4q4v 3: [267265]
        automated match to d4q4y3_
    2. Domains for 4q4w:
      1. 2822091Domain d4q4w1_: 4q4w 1: [267266]
        automated match to d2plv1_
        complexed with ca, cl, hez
      2. 2822092Domain d4q4w3_: 4q4w 3: [267267]
        automated match to d4q4y3_
        complexed with ca, cl, hez
    3. Domains for 4q4x:
      1. 2822093Domain d4q4x1_: 4q4x 1: [260751]
        automated match to d2plv1_
        complexed with ca, cl, hez, na, sia
      2. 2822094Domain d4q4x3_: 4q4x 3: [263630]
        automated match to d4q4y3_
        complexed with ca, cl, hez, na, sia
    4. Domains for 4q4y:
      1. 2822095Domain d4q4y1_: 4q4y 1: [263631]
        automated match to d2plv1_
        complexed with ca, cl, hez, mg, myr, sia
      2. 2822096Domain d4q4y3_: 4q4y 3: [260752]
        automated match to d1hxs3_
        complexed with ca, cl, hez, mg, myr, sia
  5. 2822099Coxsackievirus a6 [TaxId:86107] [339711] (2 PDB entries)
    1. Domain for 5xs4:
    2. Domain for 5yhq:
  6. 2822102Coxsackievirus b3 (strain nancy) [TaxId:103903] [402851] (1 PDB entry)
  7. 2822105Coxsackievirus b4 (strain e2) [TaxId:103905] [402895] (1 PDB entry)
  8. 2822108Echovirus e11 [TaxId:12078] [390813] (10 PDB entries)
    1. Domains for 6la3:
      1. 2822109Domain d6la3a_: 6la3 A: [390860]
        automated match to d2x5ia_
        complexed with sph
      2. 2822110Domain d6la3c_: 6la3 C: [390871]
        automated match to d1h8tc_
        complexed with sph
    2. Domains for 6la4:
      1. 2822111Domain d6la4a_: 6la4 A: [390864]
        automated match to d2x5ia_
        complexed with sph
      2. 2822112Domain d6la4c_: 6la4 C: [390846]
        automated match to d1h8tc_
        complexed with sph
    3. Domains for 6la5:
      1. 2822122Domain d6la5a_: 6la5 A: [390844]
        Other proteins in same PDB: d6la5e1, d6la5e2
        automated match to d2x5ia_
        complexed with sph
      2. 2822123Domain d6la5c_: 6la5 C: [390865]
        Other proteins in same PDB: d6la5e1, d6la5e2
        automated match to d1h8tc_
        complexed with sph
    4. Domains for 6la6:
      1. 2822113Domain d6la6a_: 6la6 A: [390834]
        Other proteins in same PDB: d6la6e1, d6la6e2, d6la6f_
        automated match to d2x5ia_
      2. 2822114Domain d6la6c_: 6la6 C: [390843]
        Other proteins in same PDB: d6la6e1, d6la6e2, d6la6f_
        automated match to d1h8tc_
    5. Domains for 6la7:
      1. 2822120Domain d6la7a_: 6la7 A: [390849]
        Other proteins in same PDB: d6la7e1, d6la7e2, d6la7f_
        automated match to d2x5ia_
      2. 2822121Domain d6la7c_: 6la7 C: [390859]
        Other proteins in same PDB: d6la7e1, d6la7e2, d6la7f_
        automated match to d1h8tc_
    6. Domains for 6lao:
      1. 2822117Domain d6laoa_: 6lao A: [390869]
        automated match to d2x5ia_
        complexed with sph
      2. 2822118Domain d6laoc_: 6lao C: [390903]
        automated match to d1h8tc_
        complexed with sph
    7. Domain for 6lap:
    8. Domain for 6lb1:
    9. Domain for 6lbo:
    10. Domain for 6lbq:
  9. 2822125Echovirus e18 [TaxId:47506] [366473] (3 PDB entries)
    1. Domains for 6hbg:
      1. 2822126Domain d6hbga_: 6hbg A: [369097]
        automated match to d1upna_
        complexed with gun, plm
      2. 2822127Domain d6hbgc_: 6hbg C: [369111]
        automated match to d2x5ic_
        complexed with gun, plm
    2. Domain for 6hbj:
    3. Domains for 7b5f:
      1. 3084312Domain d7b5fa_: 7b5f A: [420629]
        Other proteins in same PDB: d7b5fh_
        automated match to d1upna_
        complexed with gun, plm
      2. 3084335Domain d7b5fc_: 7b5f C: [420652]
        Other proteins in same PDB: d7b5fh_
        automated match to d2x5ic_
        complexed with gun, plm
  10. 2822129Echovirus e3 [TaxId:47516] [420120] (1 PDB entry)
  11. 2822132Echovirus e30 [TaxId:41846] [389842] (3 PDB entries)
    1. Domains for 7c81:
      1. 2822136Domain d7c81a_: 7c81 A: [389852]
        Other proteins in same PDB: d7c81h1, d7c81h2, d7c81l1, d7c81l2
        automated match to d1h8ta_
        complexed with sph
      2. 2822137Domain d7c81c_: 7c81 C: [389843]
        Other proteins in same PDB: d7c81h1, d7c81h2, d7c81l1, d7c81l2
        automated match to d1cov3_
        complexed with sph
    2. Domains for 7c9s:
      1. 2822133Domain d7c9sa_: 7c9s A: [390207]
        automated match to d1h8ta_
        complexed with sph
      2. 2822134Domain d7c9sc_: 7c9s C: [389867]
        automated match to d1cov3_
        complexed with sph
    3. Domain for 7c9t:
  12. 2822138Echovirus e6 [TaxId:12062] [368839] (2 PDB entries)
    1. Domains for 6ilk:
      1. 2822141Domain d6ilka_: 6ilk A: [368840]
        Other proteins in same PDB: d6ilke1, d6ilke2, d6ilke3
        automated match to d4gb31_
        complexed with sph
      2. 2822142Domain d6ilkc_: 6ilk C: [368841]
        Other proteins in same PDB: d6ilke1, d6ilke2, d6ilke3
        automated match to d1cov3_
        complexed with sph
    2. Domains for 6ilp:
      1. 2822139Domain d6ilpa_: 6ilp A: [368842]
        automated match to d4gb31_
        complexed with sph
      2. 2822140Domain d6ilpc_: 6ilp C: [368925]
        automated match to d1cov3_
        complexed with sph
  13. 2822143Enterovirus e [TaxId:12064] [335693] (1 PDB entry)
  14. 2822146Enterovirus f [TaxId:1330520] [379113] (3 PDB entries)
    1. Domains for 6t40:
      1. 2822147Domain d6t40a_: 6t40 A: [391789]
        automated match to d5osna_
        complexed with cl, cys, gly, gol, k, so4, ste
      2. 2822148Domain d6t40c_: 6t40 C: [391818]
        automated match to d5osnc_
        complexed with cl, cys, gly, gol, k, so4, ste
    2. Domains for 6t48:
      1. 2822151Domain d6t48a_: 6t48 A: [379114]
        automated match to d5osna_
        complexed with cl, cys, gly, gol, gsh, k, so4, ste
      2. 2822152Domain d6t48c_: 6t48 C: [379158]
        automated match to d5osnc_
        complexed with cl, cys, gly, gol, gsh, k, so4, ste
    3. Domains for 6t4c:
      1. 2822149Domain d6t4ca_: 6t4c A: [379134]
        automated match to d5osna_
        complexed with gol, gsh, k, so4, ste
      2. 2822150Domain d6t4cc_: 6t4c C: [379116]
        automated match to d5osnc_
        complexed with gol, gsh, k, so4, ste
  15. 2822153Foot-and-mouth disease virus - type a [TaxId:12111] [196861] (4 PDB entries)
    1. Domains for 4gh4:
      1. 2822156Domain d4gh4a_: 4gh4 A: [252214]
        automated match to d4iv1a_
      2. 2822157Domain d4gh4c_: 4gh4 C: [252215]
        automated match to d1fmd3_
    2. Domains for 4iv1:
      1. 2822154Domain d4iv1a_: 4iv1 A: [223403]
        automated match to d4iv3a_
      2. 2822155Domain d4iv1c_: 4iv1 C: [223404]
        automated match to d4iv3c_
    3. Domains for 4iv3:
      1. 2822160Domain d4iv3a_: 4iv3 A: [196862]
        automated match to d1zba1_
      2. 2822161Domain d4iv3c_: 4iv3 C: [196863]
        automated match to d1zba3_
    4. Domains for 5d8a:
      1. 2822158Domain d5d8aa_: 5d8a A: [277131]
        automated match to d1fmd1_
      2. 2822159Domain d5d8ac_: 5d8a C: [277140]
        automated match to d4iv1c_
  16. 2822162Foot-and-mouth disease virus - type o [TaxId:12118] [335439] (3 PDB entries)
    1. Domain for 5ne4:
    2. Domains for 5nem:
      1. 2822166Domain d5nem1_: 5nem 1: [335766]
        Other proteins in same PDB: d5nema1, d5nema2
        automated match to d1qqp1_
        complexed with ca, man, nag
      2. 2822167Domain d5nem3_: 5nem 3: [335685]
        Other proteins in same PDB: d5nema1, d5nema2
        automated match to d1qqp3_
        complexed with ca, man, nag
    3. Domains for 7eno:
      1. 2822164Domain d7eno1_: 7eno 1: [405266]
        automated match to d1fmd1_
        mutant
      2. 2822165Domain d7eno3_: 7eno 3: [405300]
        automated match to d5neu3_
        mutant
  17. 2822168Foot-and-mouth disease virus [TaxId:12110] [188180] (9 PDB entries)
    1. Domains for 1zba:
      1. 2822169Domain d1zba1_: 1zba 1: [162437]
        automated match to d1qqp1_
      2. 2822170Domain d1zba3_: 1zba 3: [162438]
        automated match to d1bbt3_
    2. Domains for 1zbe:
      1. 2822172Domain d1zbe1_: 1zbe 1: [241128]
        automated match to d1fmd1_
      2. 2822173Domain d1zbe3_: 1zbe 3: [241129]
        automated match to d1fmd3_
    3. Domain for 5ne4:
    4. Domains for 5ned:
      1. 2822176Domain d5neda_: 5ned A: [335663]
        automated match to d1fmd1_
      2. 2822177Domain d5nedc_: 5ned C: [335661]
        automated match to d1qqp3_
    5. Domains for 5nej:
      1. 2822178Domain d5nej1_: 5nej 1: [335683]
        automated match to d1fmd1_
      2. 2822179Domain d5nej3_: 5nej 3: [335671]
        automated match to d1qqp3_
    6. Domains for 5ner:
      1. 2822182Domain d5ner1_: 5ner 1: [335672]
        Other proteins in same PDB: d5nera1, d5nera2
        automated match to d1qqp1_
        complexed with ca, man, nag
      2. 2822183Domain d5ner3_: 5ner 3: [335678]
        Other proteins in same PDB: d5nera1, d5nera2
        automated match to d1qqp3_
        complexed with ca, man, nag
    7. Domains for 5net:
      1. 2822180Domain d5net1_: 5net 1: [335673]
        Other proteins in same PDB: d5neta1, d5neta2
        automated match to d1qqp1_
        complexed with ca, man, nag
      2. 2822181Domain d5net3_: 5net 3: [335707]
        Other proteins in same PDB: d5neta1, d5neta2
        automated match to d1qqp3_
        complexed with ca, man, nag
    8. Domains for 5neu:
      1. 2822184Domain d5neu1_: 5neu 1: [335656]
        Other proteins in same PDB: d5neua1, d5neua2
        automated match to d1qqp1_
        complexed with ca, mg
      2. 2822185Domain d5neu3_: 5neu 3: [335682]
        Other proteins in same PDB: d5neua1, d5neua2
        automated match to d1qqp3_
        complexed with ca, mg
    9. Domains for 7dst:
      1. 2822174Domain d7dsta_: 7dst A: [398892]
        Other proteins in same PDB: d7dste_
        automated match to d5nej1_
      2. 2822175Domain d7dstc_: 7dst C: [398938]
        Other proteins in same PDB: d7dste_
        automated match to d1fmd3_
  18. 2822186Foot-and-mouth disease virus [TaxId:12122] [255673] (1 PDB entry)
  19. 2822188Human coxsackievirus B3 [TaxId:12072] [194627] (1 PDB entry)
  20. 2822190Human echovirus 7 [TaxId:46018] [255678] (1 PDB entry)
  21. 2822193Human enterovirus 71 [TaxId:39054] [195913] (16 PDB entries)
    1. Domain for 3vbf:
    2. Domain for 3vbh:
    3. Domain for 3zfe:
    4. Domain for 4cdq:
    5. Domain for 4cdu:
    6. Domain for 4cdw:
    7. Domain for 4cdx:
    8. Domain for 4cew:
    9. Domain for 4cey:
    10. Domains for 4rqp:
      1. 2822213Domain d4rqpb_: 4rqp B: [261955]
        Other proteins in same PDB: d4rqpc_, d4rqpg_, d4rqpk_, d4rqpo_
        automated match to d3vbhc_
      2. 2822214Domain d4rqpf_: 4rqp F: [261954]
        Other proteins in same PDB: d4rqpc_, d4rqpg_, d4rqpk_, d4rqpo_
        automated match to d3vbhc_
      3. 2822215Domain d4rqpj_: 4rqp J: [261957]
        Other proteins in same PDB: d4rqpc_, d4rqpg_, d4rqpk_, d4rqpo_
        automated match to d3vbhc_
      4. 2822216Domain d4rqpn_: 4rqp N: [261961]
        Other proteins in same PDB: d4rqpc_, d4rqpg_, d4rqpk_, d4rqpo_
        automated match to d3vbhc_
      5. 2822217Domain d4rqpr_: 4rqp R: [261966]
        Other proteins in same PDB: d4rqpc_, d4rqpg_, d4rqpk_, d4rqpo_
        automated match to d3vbhc_
    11. Domains for 4rr3:
      1. 2822208Domain d4rr3b_: 4rr3 B: [267406]
        automated match to d3vbhc_
      2. 2822209Domain d4rr3f_: 4rr3 F: [267407]
        automated match to d3vbhc_
      3. 2822210Domain d4rr3j_: 4rr3 J: [267408]
        automated match to d3vbhc_
      4. 2822211Domain d4rr3n_: 4rr3 N: [267409]
        automated match to d3vbhc_
      5. 2822212Domain d4rr3r_: 4rr3 R: [267410]
        automated match to d3vbhc_
    12. Domain for 6uh1:
    13. Domain for 6uh6:
    14. Domain for 6uh7:
    15. Domain for 6z3p:
    16. Domain for 6z3q:
  22. 2822218Human poliovirus 3 [TaxId:12086] [397993] (1 PDB entry)
  23. 2822220Human rhinovirus 14 [TaxId:12131] [258112] (4 PDB entries)
    1. Domains for 4pdw:
      1. 2822223Domain d4pdwa_: 4pdw A: [258113]
        automated match to d1k5ma_
        complexed with 2xk, gol
      2. 2822224Domain d4pdwc_: 4pdw C: [258114]
        automated match to d1rhi3_
        complexed with 2xk, gol
    2. Domain for 5w3o:
    3. Domain for 7bg7:
    4. Domain for 7nuq:
  24. 2822226Human rhinovirus 2 [TaxId:12130] [256100] (1 PDB entry)
  25. 2822228Human rhinovirus a serotype 89 (strain 41467-gallo) [TaxId:650130] [373881] (1 PDB entry)
  26. 2822230Saffold virus [TaxId:434309] [318368] (2 PDB entries)
    1. Domains for 5cfc:
      1. 2822233Domain d5cfca_: 5cfc A: [318440]
        automated match to d1tme1_
      2. 2822234Domain d5cfcb_: 5cfc B: [318369]
        automated match to d1tmf3_
    2. Domains for 5cfd:
      1. 2822231Domain d5cfda_: 5cfd A: [318593]
        automated match to d1tme1_
      2. 2822232Domain d5cfdb_: 5cfd B: [318483]
        automated match to d1tmf3_
  27. 3086279Coxsackievirus b5 [TaxId:12074] [422596] (1 PDB entry)

More info for Protein automated matches from b.121.4.1: Picornaviridae-like VP (VP1, VP2, VP3 and VP4)

Timeline for Protein automated matches from b.121.4.1: Picornaviridae-like VP (VP1, VP2, VP3 and VP4):