Lineage for Protein: automated matches

  1. Root: SCOPe 2.08
  2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. Fold c.1: TIM beta/alpha-barrel [51350] (34 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. Superfamily c.1.16: Bacterial luciferase-like [51679] (5 families) (S)
    consists of clearly related families of somewhat different folds
  5. Family c.1.16.0: automated matches [191510] (1 protein)
    not a true family
  6. Protein automated matches [190849] (11 species)
    not a true protein

Species:

  1. Bacillus cereus [TaxId:222523] [226123] (1 PDB entry)
  2. Bacillus subtilis [TaxId:1423] [333823] (3 PDB entries)
    1. Domains for 5tlc:
      1. Domain d5tlca_: 5tlc A: [333934]
        automated match to d1tvla_
      2. Domain d5tlcb_: 5tlc B: [333839]
        automated match to d1tvla_
      3. Domain d5tlcc_: 5tlc C: [333868]
        automated match to d1tvla_
      4. Domain d5tlcd_: 5tlc D: [333824]
        automated match to d1tvla_
    2. Domains for 5xkc:
      1. Domain d5xkca_: 5xkc A: [352007]
        automated match to d5tlca_
      2. Domain d5xkcb_: 5xkc B: [351967]
        automated match to d5tlca_
      3. Domain d5xkcc_: 5xkc C: [352024]
        automated match to d5tlca_
      4. Domain d5xkcd_: 5xkc D: [351937]
        automated match to d5tlca_
    3. Domains for 5xkd:
      1. Domain d5xkda_: 5xkd A: [352025]
        automated match to d5tlca_
        complexed with fmn
      2. Domain d5xkdb_: 5xkd B: [352014]
        automated match to d5tlca_
        complexed with fmn
      3. Domain d5xkdc_: 5xkd C: [352003]
        automated match to d5tlca_
        complexed with fmn
      4. Domain d5xkdd_: 5xkd D: [351930]
        automated match to d5tlca_
        complexed with fmn
  3. Burkholderia pseudomallei [TaxId:320372] [189999] (1 PDB entry)
  4. Edta-degrading bacterium [TaxId:85561] [313702] (1 PDB entry)
  5. Geobacillus thermodenitrificans [TaxId:33940] [225395] (2 PDB entries)
    1. Domains for 3b9n:
      1. Domain d3b9na_: 3b9n A: [208572]
        automated match to d3sdoa_
      2. Domain d3b9nb_: 3b9n B: [208573]
        automated match to d3sdoa_
    2. Domains for 3b9o:
      1. Domain d3b9oa_: 3b9o A: [208574]
        automated match to d3sdoa_
        complexed with fmn
      2. Domain d3b9ob_: 3b9o B: [208575]
        automated match to d3sdoa_
        complexed with fmn
  6. Methanosarcina barkeri [TaxId:2208] [188169] (1 PDB entry)
  7. Mycobacterium tuberculosis [TaxId:83332] [225443] (2 PDB entries)
    1. Domains for 3b4y:
      1. Domain d3b4ya_: 3b4y A: [208534]
        automated match to d1rhca_
        complexed with f42, flc
      2. Domain d3b4yb_: 3b4y B: [208535]
        automated match to d1rhca_
        complexed with f42, flc
    2. Domains for 3c8n:
      1. Domain d3c8na1: 3c8n A:1-334 [208816]
        Other proteins in same PDB: d3c8na2
        automated match to d1rhca_
      2. Domain d3c8nb_: 3c8n B: [208817]
        Other proteins in same PDB: d3c8na2
        automated match to d1rhca_
      3. Domain d3c8nc_: 3c8n C: [208818]
        Other proteins in same PDB: d3c8na2
        automated match to d1rhca_
      4. Domain d3c8nd_: 3c8n D: [208819]
        Other proteins in same PDB: d3c8na2
        automated match to d1rhca_
  8. Nocardia tenerifensis [TaxId:228006] [398936] (1 PDB entry)
  9. Nocardioides sp. [TaxId:393303] [379519] (1 PDB entry)
  10. Rhodococcus jostii [TaxId:101510] [327652] (1 PDB entry)
  11. Streptomyces bottropensis [TaxId:42235] [398412] (1 PDB entry)

More info for Protein automated matches from c.1.16.0: automated matches

Timeline for Protein automated matches from c.1.16.0: automated matches: