SCOPe 2.08: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.08
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

Fold c.1: TIM beta/alpha-barrel [51350] (34 superfamilies)
contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
the first seven superfamilies have similar phosphate-binding sites

Superfamily c.1.16: Bacterial luciferase-like [51679] (5 families)
consists of clearly related families of somewhat different folds
Family c.1.16.0: automated matches [191510] (1 protein)
not a true family
Protein automated matches [190849] (11 species)
not a true protein

Species:

Bacillus cereus [TaxId:222523] [226123] (1 PDB entry)
- Domains for 3rao:
  1. Domain d3raoa1: 3rao A:2-348 [215690]
    Other proteins in same PDB: d3raoa2, d3raob2
    automated match to d1nqka_
    complexed with so4
  2. Domain d3raob1: 3rao B:2-348 [215691]
    Other proteins in same PDB: d3raoa2, d3raob2
    automated match to d1nqka_
    complexed with so4
Bacillus subtilis [TaxId:1423] [333823] (3 PDB entries)
1. Domains for 5tlc:
  1. Domain d5tlca_: 5tlc A: [333934]
    automated match to d1tvla_
  2. Domain d5tlcb_: 5tlc B: [333839]
    automated match to d1tvla_
  3. Domain d5tlcc_: 5tlc C: [333868]
    automated match to d1tvla_
  4. Domain d5tlcd_: 5tlc D: [333824]
    automated match to d1tvla_
2. Domains for 5xkc:
  1. Domain d5xkca_: 5xkc A: [352007]
    automated match to d5tlca_
  2. Domain d5xkcb_: 5xkc B: [351967]
    automated match to d5tlca_
  3. Domain d5xkcc_: 5xkc C: [352024]
    automated match to d5tlca_
  4. Domain d5xkcd_: 5xkc D: [351937]
    automated match to d5tlca_
3. Domains for 5xkd:
  1. Domain d5xkda_: 5xkd A: [352025]
    automated match to d5tlca_
    complexed with fmn
  2. Domain d5xkdb_: 5xkd B: [352014]
    automated match to d5tlca_
    complexed with fmn
  3. Domain d5xkdc_: 5xkd C: [352003]
    automated match to d5tlca_
    complexed with fmn
  4. Domain d5xkdd_: 5xkd D: [351930]
    automated match to d5tlca_
    complexed with fmn
Burkholderia pseudomallei [TaxId:320372] [189999] (1 PDB entry)
- Domains for 3sdo:
  1. Domain d3sdoa1: 3sdo A:1-441 [185361]
    Other proteins in same PDB: d3sdoa2
    automated match to d1tvla_
    complexed with edo
  2. Domain d3sdob_: 3sdo B: [185362]
    Other proteins in same PDB: d3sdoa2
    automated match to d1tvla_
    complexed with edo
Edta-degrading bacterium [TaxId:85561] [313702] (1 PDB entry)
- Domains for 5dqp:
  1. Domain d5dqpa_: 5dqp A: [313703]
    automated match to d3sdob_
    complexed with pe4, so4
  2. Domain d5dqpb_: 5dqp B: [316587]
    automated match to d5dqpa_
    complexed with pe4, so4
Geobacillus thermodenitrificans [TaxId:33940] [225395] (2 PDB entries)
1. Domains for 3b9n:
  1. Domain d3b9na_: 3b9n A: [208572]
    automated match to d3sdoa_
  2. Domain d3b9nb_: 3b9n B: [208573]
    automated match to d3sdoa_
2. Domains for 3b9o:
  1. Domain d3b9oa_: 3b9o A: [208574]
    automated match to d3sdoa_
    complexed with fmn
  2. Domain d3b9ob_: 3b9o B: [208575]
    automated match to d3sdoa_
    complexed with fmn
Methanosarcina barkeri [TaxId:2208] [188169] (1 PDB entry)
- Domains for 1z69:
  1. Domain d1z69a_: 1z69 A: [162390]
    automated match to d1f07a_
    complexed with 1pg, cl, f42
  2. Domain d1z69b_: 1z69 B: [162391]
    automated match to d1f07a_
    complexed with 1pg, cl, f42
  3. Domain d1z69c_: 1z69 C: [162392]
    automated match to d1f07a_
    complexed with 1pg, cl, f42
  4. Domain d1z69d_: 1z69 D: [162393]
    automated match to d1f07a_
    complexed with 1pg, cl, f42
Mycobacterium tuberculosis [TaxId:83332] [225443] (2 PDB entries)
1. Domains for 3b4y:
  1. Domain d3b4ya_: 3b4y A: [208534]
    automated match to d1rhca_
    complexed with f42, flc
  2. Domain d3b4yb_: 3b4y B: [208535]
    automated match to d1rhca_
    complexed with f42, flc
2. Domains for 3c8n:
  1. Domain d3c8na1: 3c8n A:1-334 [208816]
    Other proteins in same PDB: d3c8na2
    automated match to d1rhca_
  2. Domain d3c8nb_: 3c8n B: [208817]
    Other proteins in same PDB: d3c8na2
    automated match to d1rhca_
  3. Domain d3c8nc_: 3c8n C: [208818]
    Other proteins in same PDB: d3c8na2
    automated match to d1rhca_
  4. Domain d3c8nd_: 3c8n D: [208819]
    Other proteins in same PDB: d3c8na2
    automated match to d1rhca_
Nocardia tenerifensis [TaxId:228006] [398936] (1 PDB entry)
- Domain for 7e36:
  - Domain d7e36b_: 7e36 B: [398937]
    automated match to d3sdob_
    complexed with cl, mes, mg, so4, trs
Nocardioides sp. [TaxId:393303] [379519] (1 PDB entry)
- Domains for 6lr1:
  1. Domain d6lr1a_: 6lr1 A: [379523]
    automated match to d3b9nb_
  2. Domain d6lr1b_: 6lr1 B: [379520]
    automated match to d3b9nb_
Rhodococcus jostii [TaxId:101510] [327652] (1 PDB entry)
- Domains for 5lxe:
  1. Domain d5lxea_: 5lxe A: [327653]
    automated match to d1rhca_
    complexed with gol, so4
  2. Domain d5lxeb_: 5lxe B: [327677]
    automated match to d1rhca_
    complexed with gol, so4
Streptomyces bottropensis [TaxId:42235] [398412] (1 PDB entry)
- Domains for 7bip:
  1. Domain d7bipa_: 7bip A: [398413]
    automated match to d1luca_
    complexed with ca, edo, epe, peg, pg4, xpe
  2. Domain d7bipb_: 7bip B: [398437]
    automated match to d1luca_
    complexed with ca, edo, epe, peg, pg4, xpe

More info for Protein automated matches from c.1.16.0: automated matches

Timeline for Protein automated matches from c.1.16.0: automated matches:

Protein automated matches from c.1.16.0: automated matches first appeared in SCOPe 2.01
Protein automated matches from c.1.16.0: automated matches appears in SCOPe 2.07