Lineage for Protein: automated matches

  1. Root: SCOPe 2.08
  2. 2923792Class d: Alpha and beta proteins (a+b) [53931] (396 folds)
  3. 2970038Fold d.110: Profilin-like [55769] (10 superfamilies)
    core: 2 alpha-helices and 5-stranded antiparallel sheet: order 21543; 3 layers: alpha/beta/alpha
  4. 2970135Superfamily d.110.2: GAF domain-like [55781] (5 families) (S)
    alpha(2)-beta(3)-alpha-beta(3)-alpha; antiparallel beta-sheet: order 321654
  5. 2970256Family d.110.2.0: automated matches [191507] (1 protein)
    not a true family
  6. 2970257Protein automated matches [190838] (19 species)
    not a true protein

Species:

  1. 2970258Arthrobacter aurescens [TaxId:290340] [225953] (1 PDB entry)
  2. 2970261Burkholderia vietnamiensis [TaxId:269482] [314740] (1 PDB entry)
  3. 2970264Escherichia coli [TaxId:562] [188153] (2 PDB entries)
    1. Domain for 1ysp:
    2. Domain for 1ysq:
  4. 2970267Microchaete diplosiphon [TaxId:1197] [403064] (1 PDB entry)
  5. 2970270Neisseria meningitidis [TaxId:604162] [189344] (1 PDB entry)
  6. 2970273Nostoc punctiforme [TaxId:63737] [351131] (2 PDB entries)
    1. Domain for 6bhn:
    2. Domain for 6bho:
  7. 2970276Nostoc sp. [TaxId:103690] [419994] (1 PDB entry)
  8. 2970278Pseudomonas aeruginosa [TaxId:287] [255839] (2 PDB entries)
    1. Domains for 3g6o:
      1. 2970279Domain d3g6oa2: 3g6o A:118-309 [246241]
        Other proteins in same PDB: d3g6oa1, d3g6ob1
        automated match to d3nhqa2
        complexed with bla; mutant
      2. 2970280Domain d3g6oa3: 3g6o A:310-494 [246242]
        Other proteins in same PDB: d3g6oa1, d3g6ob1
        automated match to d3nhqa3
        complexed with bla; mutant
      3. 2970281Domain d3g6ob2: 3g6o B:118-309 [246244]
        Other proteins in same PDB: d3g6oa1, d3g6ob1
        automated match to d3nhqa2
        complexed with bla; mutant
      4. 2970282Domain d3g6ob3: 3g6o B:310-494 [246245]
        Other proteins in same PDB: d3g6oa1, d3g6ob1
        automated match to d3nhqa3
        complexed with bla; mutant
    2. Domains for 3ibr:
      1. 2970283Domain d3ibra2: 3ibr A:118-309 [246896]
        Other proteins in same PDB: d3ibra1, d3ibrb1
        automated match to d3nhqa2
        complexed with bla; mutant
      2. 2970284Domain d3ibra3: 3ibr A:310-494 [246897]
        Other proteins in same PDB: d3ibra1, d3ibrb1
        automated match to d3nhqa3
        complexed with bla; mutant
      3. 2970285Domain d3ibrb2: 3ibr B:118-309 [246899]
        Other proteins in same PDB: d3ibra1, d3ibrb1
        automated match to d3nhqa2
        complexed with bla; mutant
      4. 2970286Domain d3ibrb3: 3ibr B:310-494 [246900]
        Other proteins in same PDB: d3ibra1, d3ibrb1
        automated match to d3nhqa3
        complexed with bla; mutant
  9. 2970287Pseudomonas aeruginosa, PA01 [TaxId:208964] [255984] (1 PDB entry)
  10. 2970289Rhodopseudomonas palustris [TaxId:1076] [335302] (2 PDB entries)
    1. Domain for 5vik:
    2. Domain for 5viq:
  11. 2970292Rhodopseudomonas palustris [TaxId:258594] [226420] (1 PDB entry)
  12. 2970295Staphylococcus aureus [TaxId:282458] [189340] (4 PDB entries)
    1. Domains for 3ksf:
      1. 2970298Domain d3ksfa_: 3ksf A: [179645]
        automated match to d1vhma_
        complexed with peg
      2. 2970299Domain d3ksfb_: 3ksf B: [179646]
        automated match to d1vhma_
        complexed with peg
      3. 2970300Domain d3ksfc_: 3ksf C: [179647]
        automated match to d1vhma_
        complexed with peg
      4. 2970301Domain d3ksfd_: 3ksf D: [179648]
        automated match to d1vhma_
        complexed with peg
      5. 2970302Domain d3ksfe_: 3ksf E: [179649]
        automated match to d1vhma_
        complexed with peg
      6. 2970303Domain d3ksff_: 3ksf F: [179650]
        automated match to d1vhma_
        complexed with peg
      7. 2970304Domain d3ksfg_: 3ksf G: [179651]
        automated match to d1vhma_
        complexed with peg
      8. 2970305Domain d3ksfh_: 3ksf H: [179652]
        automated match to d1vhma_
        complexed with peg
    2. Domains for 3ksg:
      1. 2970306Domain d3ksga_: 3ksg A: [179653]
        automated match to d1vhma_
        complexed with sme
      2. 2970307Domain d3ksgb_: 3ksg B: [179654]
        automated match to d1vhma_
        complexed with sme
    3. Domain for 3ksh:
    4. Domain for 3ksi:
  13. 2970308Stigmatella aurantiaca [TaxId:378806] [317295] (3 PDB entries)
    1. Domain for 4rq9:
    2. Domain for 6baf:
    3. Domain for 6bak:
  14. 2970312Streptococcus pneumoniae [TaxId:171101] [195619] (1 PDB entry)
  15. 2970315Synechocystis sp. [TaxId:1111708] [419948] (4 PDB entries)
    1. Domain for 5dfx:
    2. Domain for 5dfy:
    3. Domain for 5m82:
    4. Domain for 5m85:
  16. 2970320Synechocystis sp. [TaxId:1148] [256164] (1 PDB entry)
  17. 2970323Thermosynechococcus elongatus [TaxId:146786] [378509] (1 PDB entry)
  18. 2970326Thermosynechococcus elongatus [TaxId:197221] [197087] (8 PDB entries)
    1. Domain for 2m7u:
    2. Domain for 2m7v:
    3. Domains for 3vv4:
      1. 2970334Domain d3vv4a_: 3vv4 A: [250697]
        Other proteins in same PDB: d3vv4b2
        automated match to d4fofa_
        complexed with pvg, so4
      2. 2970335Domain d3vv4b1: 3vv4 B:2-158 [250698]
        Other proteins in same PDB: d3vv4b2
        automated match to d4fofa_
        complexed with pvg, so4
    4. Domain for 4fof:
    5. Domain for 4glq:
    6. Domains for 6p58:
      1. 2970327Domain d6p58a_: 6p58 A: [378303]
        automated match to d3vv4a_
        complexed with edo, mg, vrb
      2. 2970328Domain d6p58b_: 6p58 B: [378304]
        automated match to d3vv4a_
        complexed with edo, mg, vrb
    7. Domains for 6pru:
      1. 2970330Domain d6prua_: 6pru A: [378315]
        automated match to d3vv4a_
        complexed with cl, edo, mg, peg, vrb
      2. 2970331Domain d6prub_: 6pru B: [378314]
        automated match to d3vv4a_
        complexed with cl, edo, mg, peg, vrb
    8. Domains for 6pry:
      1. 2970332Domain d6prya_: 6pry A: [378328]
        automated match to d3vv4a_
        complexed with cl, mg, peg, vrb
      2. 2970333Domain d6pryb_: 6pry B: [378327]
        automated match to d3vv4a_
        complexed with cl, mg, peg, vrb
  19. 2970339[leptolyngbya] sp. [TaxId:1487953] [420074] (2 PDB entries)
    1. Domains for 6xhg:
      1. 2970342Domain d6xhga_: 6xhg A: [417057]
        automated match to d6bhoa_
        complexed with bvx, edo
      2. 2970343Domain d6xhgb_: 6xhg B: [417058]
        automated match to d6bhoa_
        complexed with bvx, edo
    2. Domains for 6xhh:
      1. 2970340Domain d6xhha_: 6xhh A: [417059]
        automated match to d6bhoa_
        complexed with edo, m1v
      2. 2970341Domain d6xhhb_: 6xhh B: [417060]
        automated match to d6bhoa_
        complexed with edo, m1v

More info for Protein automated matches from d.110.2.0: automated matches

Timeline for Protein automated matches from d.110.2.0: automated matches: