Lineage for Protein: automated matches

  1. Root: SCOPe 2.08
  2. 3012399Class e: Multi-domain proteins (alpha and beta) [56572] (74 folds)
  3. 3018494Fold e.17: D-aminoacid aminotransferase-like PLP-dependent enzymes [56751] (1 superfamily)
    2 domains: (1) alpha+beta: beta3-alpha2-beta2; (2) alpha/beta, a part of its mixed sheet forms barrel: n=6, S=8
  4. 3018495Superfamily e.17.1: D-aminoacid aminotransferase-like PLP-dependent enzymes [56752] (2 families) (S)
  5. 3018614Family e.17.1.0: automated matches [191499] (1 protein)
    not a true family
  6. 3018615Protein automated matches [190815] (21 species)
    not a true protein

Species:

  1. 3018616Archaeoglobus fulgidus [TaxId:224325] [346542] (2 PDB entries)
    1. Domains for 5mqz:
      1. 3018617Domain d5mqza_: 5mqz A: [346566]
        automated match to d5cm0b_
        complexed with cl, edo, peg, tam
      2. 3018618Domain d5mqzb_: 5mqz B: [346703]
        automated match to d5cm0b_
        complexed with cl, edo, peg, tam
      3. 3018619Domain d5mqzc_: 5mqz C: [346806]
        automated match to d5cm0b_
        complexed with cl, edo, peg, tam
      4. 3018620Domain d5mqzd_: 5mqz D: [346742]
        automated match to d5cm0b_
        complexed with cl, edo, peg, tam
      5. 3018621Domain d5mqze_: 5mqz E: [346785]
        automated match to d5cm0b_
        complexed with cl, edo, peg, tam
      6. 3018622Domain d5mqzf_: 5mqz F: [346833]
        automated match to d5cm0b_
        complexed with cl, edo, peg, tam
    2. Domains for 5mr0:
      1. 3018623Domain d5mr0a_: 5mr0 A: [346597]
        automated match to d5cm0b_
        complexed with cl, edo, peg, pxg, tam
      2. 3018624Domain d5mr0b_: 5mr0 B: [346645]
        automated match to d5cm0b_
        complexed with cl, edo, peg, pxg, tam
      3. 3018625Domain d5mr0c_: 5mr0 C: [346543]
        automated match to d5cm0b_
        complexed with cl, edo, peg, pxg, tam
      4. 3018626Domain d5mr0d_: 5mr0 D: [346830]
        automated match to d5cm0b_
        complexed with cl, edo, peg, pxg, tam
      5. 3018627Domain d5mr0e_: 5mr0 E: [346689]
        automated match to d5cm0b_
        complexed with cl, edo, peg, pxg, tam
      6. 3018628Domain d5mr0f_: 5mr0 F: [346583]
        automated match to d5cm0b_
        complexed with cl, edo, peg, pxg, tam
  2. 3018629Burkholderia cenocepacia [TaxId:216591] [346410] (1 PDB entry)
  3. 3018632Burkholderia pseudomallei [TaxId:28450] [226245] (1 PDB entry)
  4. 3018639Burkholderia pseudomallei [TaxId:557724] [260287] (1 PDB entry)
  5. 3018646Burkholderia thailandensis [TaxId:271848] [346411] (2 PDB entries)
    1. Domains for 4m0j:
      1. 3018648Domain d4m0ja_: 4m0j A: [345338]
        automated match to d5cm0b_
        complexed with ca
      2. 3018649Domain d4m0jb_: 4m0j B: [345339]
        automated match to d5cm0b_
        complexed with ca
    2. Domain for 4tm5:
  6. 3018650Deinococcus radiodurans [TaxId:1299] [267897] (3 PDB entries)
    1. Domains for 3uyy:
      1. 3018653Domain d3uyya_: 3uyy A: [265544]
        automated match to d4dqna_
        complexed with plp
      2. 3018654Domain d3uyyb_: 3uyy B: [265545]
        automated match to d4dqna_
        complexed with plp
    2. Domains for 3uzb:
      1. 3018655Domain d3uzba_: 3uzb A: [265546]
        automated match to d4dqna_
        complexed with coi, plp
      2. 3018656Domain d3uzbb_: 3uzb B: [265547]
        automated match to d4dqna_
        complexed with coi, plp
      3. 3018657Domain d3uzbc_: 3uzb C: [265548]
        automated match to d4dqna_
        complexed with coi, plp
      4. 3018658Domain d3uzbd_: 3uzb D: [265549]
        automated match to d4dqna_
        complexed with coi, plp
    3. Domains for 3uzo:
      1. 3018651Domain d3uzoa_: 3uzo A: [265550]
        automated match to d4dqna_
        complexed with glu, plp
      2. 3018652Domain d3uzob_: 3uzo B: [265551]
        automated match to d4dqna_
        complexed with glu, plp
  7. 3018659Geoglobus acetivorans [TaxId:565033] [322475] (2 PDB entries)
    1. Domains for 5cm0:
      1. 3018660Domain d5cm0a_: 5cm0 A: [322535]
        automated match to d2eiya_
        complexed with gol, plp
      2. 3018661Domain d5cm0b_: 5cm0 B: [322476]
        automated match to d2eiya_
        complexed with gol, plp
      3. 3018662Domain d5cm0c_: 5cm0 C: [322531]
        automated match to d2eiya_
        complexed with gol, plp
    2. Domains for 5e25:
      1. 3018663Domain d5e25a_: 5e25 A: [323599]
        automated match to d2eiya_
        complexed with akg, plp
      2. 3018664Domain d5e25b_: 5e25 B: [323556]
        automated match to d2eiya_
        complexed with akg, plp
      3. 3018665Domain d5e25c_: 5e25 C: [323555]
        automated match to d2eiya_
        complexed with akg, plp
  8. 3018666Giardia intestinalis [TaxId:184922] [402326] (1 PDB entry)
  9. 3018671Mycobacterium smegmatis [TaxId:1772] [232037] (3 PDB entries)
    1. Domain for 3dtg:
    2. Domains for 3dth:
      1. 3018672Domain d3dtha_: 3dth A: [305238]
        automated match to d3jz6a_
        complexed with gol, mes, obz, plp
      2. 3018673Domain d3dthb_: 3dth B: [305239]
        automated match to d3jz6a_
        complexed with gol, mes, obz, plp
    3. Domains for 3jz6:
      1. 3018675Domain d3jz6a_: 3jz6 A: [247072]
        automated match to d3dtga_
        complexed with gol, plp
      2. 3018676Domain d3jz6b_: 3jz6 B: [247073]
        automated match to d3dtga_
        complexed with gol, plp
  10. 3018677Mycobacterium smegmatis [TaxId:246196] [232034] (2 PDB entries)
    1. Domains for 3dtf:
      1. 3018678Domain d3dtfa_: 3dtf A: [232035]
        automated match to d2coib_
        complexed with gol, so4
      2. 3018679Domain d3dtfb_: 3dtf B: [232036]
        automated match to d2coib_
        complexed with gol, so4
    2. Domain for 3dtg:
  11. 3018681Mycobacterium tuberculosis [TaxId:1773] [232507] (1 PDB entry)
  12. 3018683Mycobacterium tuberculosis [TaxId:83332] [332135] (1 PDB entry)
  13. 3018686Pseudomonas aeruginosa [TaxId:208964] [364634] (1 PDB entry)
  14. 3018693Pseudomonas sp. [TaxId:1207075] [378718] (1 PDB entry)
  15. 3018696Sinorhizobium meliloti [TaxId:266834] [346412] (1 PDB entry)
  16. 3018699Streptococcus mutans [TaxId:1309] [256238] (1 PDB entry)
  17. 3018701Thermobaculum terrenum [TaxId:525904] [358010] (4 PDB entries)
    1. Domains for 6gkr:
      1. 3018705Domain d6gkra_: 6gkr A: [358018]
        automated match to d3u0ga_
        complexed with act, cl, plp
      2. 3018706Domain d6gkrb_: 6gkr B: [358026]
        automated match to d3u0ga_
        complexed with act, cl, plp
      3. 3018707Domain d6gkrc_: 6gkr C: [358031]
        automated match to d3u0ga_
        complexed with act, cl, plp
    2. Domain for 6q8e:
    3. Domain for 7nea:
    4. Domain for 7neb:
  18. 3018708Thermoproteus uzoniensis [TaxId:999630] [312849] (2 PDB entries)
    1. Domains for 5ce8:
      1. 3018712Domain d5ce8a1: 5ce8 A:1-295 [312850]
        Other proteins in same PDB: d5ce8a2, d5ce8b2
        automated match to d3u0gb_
        complexed with peg, plp
      2. 3018713Domain d5ce8b1: 5ce8 B:1-295 [312851]
        Other proteins in same PDB: d5ce8a2, d5ce8b2
        automated match to d3u0gb_
        complexed with peg, plp
      3. 3018714Domain d5ce8c_: 5ce8 C: [312900]
        Other proteins in same PDB: d5ce8a2, d5ce8b2
        automated match to d3u0gb_
        complexed with peg, plp
    2. Domains for 6thq:
      1. 3018709Domain d6thqa1: 6thq A:1-295 [391962]
        Other proteins in same PDB: d6thqa2, d6thqb2, d6thqc2
        automated match to d3u0gb_
        complexed with plp, py5
      2. 3018710Domain d6thqb1: 6thq B:1-295 [391943]
        Other proteins in same PDB: d6thqa2, d6thqb2, d6thqc2
        automated match to d3u0gb_
        complexed with plp, py5
      3. 3018711Domain d6thqc1: 6thq C:1-295 [391902]
        Other proteins in same PDB: d6thqa2, d6thqb2, d6thqc2
        automated match to d3u0gb_
        complexed with plp, py5
  19. 3018715Thermotoga maritima [TaxId:243274] [188420] (1 PDB entry)
  20. 3018720Thermus thermophilus HB8 [TaxId:300852] [188374] (4 PDB entries)
    1. Domains for 2eiy:
      1. 3018727Domain d2eiya_: 2eiy A: [164071]
        automated match to d1a3ga_
        complexed with 4mv, mpd, plp
      2. 3018728Domain d2eiyb_: 2eiy B: [164072]
        automated match to d1a3ga_
        complexed with 4mv, mpd, plp
      3. 3018729Domain d2eiyc_: 2eiy C: [164073]
        automated match to d1a3ga_
        complexed with 4mv, mpd, plp
    2. Domains for 2ej0:
      1. 3018721Domain d2ej0a_: 2ej0 A: [164074]
        automated match to d1a3ga_
        complexed with mpd, pmp
      2. 3018722Domain d2ej0b_: 2ej0 B: [164075]
        automated match to d1a3ga_
        complexed with mpd, pmp
      3. 3018723Domain d2ej0c_: 2ej0 C: [164076]
        automated match to d1a3ga_
        complexed with mpd, pmp
      4. 3018724Domain d2ej0d_: 2ej0 D: [164077]
        automated match to d1a3ga_
        complexed with mpd, pmp
      5. 3018725Domain d2ej0e_: 2ej0 E: [164078]
        automated match to d1a3ga_
        complexed with mpd, pmp
      6. 3018726Domain d2ej0f_: 2ej0 F: [164079]
        automated match to d1a3ga_
        complexed with mpd, pmp
    3. Domains for 2ej2:
      1. 3018730Domain d2ej2a_: 2ej2 A: [164080]
        automated match to d1a3ga_
        complexed with mpd, ppe
      2. 3018731Domain d2ej2b_: 2ej2 B: [164081]
        automated match to d1a3ga_
        complexed with mpd, ppe
      3. 3018732Domain d2ej2c_: 2ej2 C: [164082]
        automated match to d1a3ga_
        complexed with mpd, ppe
      4. 3018733Domain d2ej2d_: 2ej2 D: [164083]
        automated match to d1a3ga_
        complexed with mpd, ppe
      5. 3018734Domain d2ej2e_: 2ej2 E: [164084]
        automated match to d1a3ga_
        complexed with mpd, ppe
      6. 3018735Domain d2ej2f_: 2ej2 F: [164085]
        automated match to d1a3ga_
        complexed with mpd, ppe
    4. Domains for 2ej3:
      1. 3018736Domain d2ej3a_: 2ej3 A: [164086]
        automated match to d1a3ga_
        complexed with gbn, mpd, plp
      2. 3018737Domain d2ej3b_: 2ej3 B: [164087]
        automated match to d1a3ga_
        complexed with gbn, mpd, plp
      3. 3018738Domain d2ej3c_: 2ej3 C: [164088]
        automated match to d1a3ga_
        complexed with gbn, mpd, plp
  21. 3018739Thermus thermophilus [TaxId:274] [188090] (1 PDB entry)

More info for Protein automated matches from e.17.1.0: automated matches

Timeline for Protein automated matches from e.17.1.0: automated matches: