Lineage for Protein: automated matches

  1. Root: SCOPe 2.05
  2. 1886641Class d: Alpha and beta proteins (a+b) [53931] (381 folds)
  3. 1917420Fold d.92: Zincin-like [55485] (2 superfamilies)
    contains mixed beta sheet with connection over free side of the sheet
  4. 1917421Superfamily d.92.1: Metalloproteases ("zincins"), catalytic domain [55486] (18 families) (S)
  5. 1918487Family d.92.1.0: automated matches [191495] (1 protein)
    not a true family
  6. 1918488Protein automated matches [190805] (14 species)
    not a true protein

Species:

  1. 1918489African clawed frog (Xenopus laevis) [TaxId:8355] [256267] (1 PDB entry)
  2. 1918492Bacillus subtilis [TaxId:1423] [188945] (1 PDB entry)
  3. 1918495Clostridium botulinum [TaxId:1491] [193827] (5 PDB entries)
    1. Domain for 2fpq:
    2. Domain for 2qn0:
    3. Domains for 2w2d:
      1. 1918499Domain d2w2db1: 2w2d B:449-547 [206575]
        Other proteins in same PDB: d2w2db2, d2w2dd2
        automated match to d3btaa3
        complexed with act, cl, gol, so4, zn
      2. 1918500Domain d2w2dd1: 2w2d D:449-547 [206576]
        Other proteins in same PDB: d2w2db2, d2w2dd2
        automated match to d3btaa3
        complexed with act, cl, gol, so4, zn
    4. Domain for 2xhl:
    5. Domain for 3deb:
  4. 1918502Clostridium tetani [TaxId:1513] [224976] (2 PDB entries)
    1. Domain for 1yvg:
    2. Domain for 1z7h:
  5. 1918505Clostridium tetani [TaxId:212717] [236546] (1 PDB entry)
  6. 1918507Human (Homo sapiens) [TaxId:9606] [188286] (36 PDB entries)
    1. Domains for 2c6f:
      1. 1918563Domain d2c6fa_: 2c6f A: [241411]
        automated match to d4bzsa_
        complexed with act, cl, gol, nag, zn
      2. 1918564Domain d2c6fb_: 2c6f B: [241412]
        automated match to d4bzsa_
        complexed with act, cl, gol, nag, zn
    2. Domains for 2c6n:
      1. 1918575Domain d2c6na_: 2c6n A: [241415]
        automated match to d4bzsa_
        complexed with act, cl, gol, lpr, nag, ndg, zn
      2. 1918576Domain d2c6nb_: 2c6n B: [241416]
        automated match to d4bzsa_
        complexed with act, cl, gol, lpr, nag, ndg, zn
    3. Domain for 2ddy:
    4. Domains for 2xyd:
      1. 1918536Domain d2xyda_: 2xyd A: [170476]
        automated match to d1o86a_
        complexed with 3es, cl, p6g, peg, pg4, zn
      2. 1918537Domain d2xydb_: 2xyd B: [170477]
        automated match to d1o86a_
        complexed with 3es, cl, p6g, peg, pg4, zn
    5. Domains for 3b8z:
      1. 1918514Domain d3b8za_: 3b8z A: [172500]
        automated match to d1r54a_
        complexed with 294, ca, zn
      2. 1918515Domain d3b8zb_: 3b8z B: [172501]
        automated match to d1r54a_
        complexed with 294, ca, zn
    6. Domain for 3dwb:
    7. Domain for 3edg:
    8. Domain for 3edh:
    9. Domain for 3edi:
    10. Domains for 3hy7:
      1. 1918517Domain d3hy7a_: 3hy7 A: [177913]
        automated match to d1r54a_
        complexed with 097, ca, zn
      2. 1918518Domain d3hy7b_: 3hy7 B: [177914]
        automated match to d1r54a_
        complexed with 097, ca, zn
    11. Domains for 3hy9:
      1. 1918524Domain d3hy9a_: 3hy9 A: [177915]
        automated match to d1r54a_
        complexed with 098, ca, zn
      2. 1918525Domain d3hy9b_: 3hy9 B: [191740]
        automated match to d3b8za_
        complexed with 098, ca, zn
    12. Domains for 3hyg:
      1. 1918511Domain d3hyga_: 3hyg A: [177943]
        automated match to d1r54a_
        complexed with 099, ca, zn
      2. 1918512Domain d3hygb_: 3hyg B: [177944]
        automated match to d1r54a_
        complexed with 099, ca, zn
    13. Domain for 3ljt:
    14. Domains for 3mdj:
      1. 1918556Domain d3mdja2: 3mdj A:255-529 [247645]
        Other proteins in same PDB: d3mdja1, d3mdja3, d3mdja4, d3mdjb1, d3mdjb3, d3mdjb4, d3mdjc1, d3mdjc3, d3mdjc4
        automated match to d2yd0a2
        complexed with bes, nag, zn
      2. 1918557Domain d3mdjb2: 3mdj B:255-529 [247649]
        Other proteins in same PDB: d3mdja1, d3mdja3, d3mdja4, d3mdjb1, d3mdjb3, d3mdjb4, d3mdjc1, d3mdjc3, d3mdjc4
        automated match to d2yd0a2
        complexed with bes, nag, zn
      3. 1918558Domain d3mdjc2: 3mdj C:255-529 [247653]
        Other proteins in same PDB: d3mdja1, d3mdja3, d3mdja4, d3mdjb1, d3mdjb3, d3mdjb4, d3mdjc1, d3mdjc3, d3mdjc4
        automated match to d2yd0a2
        complexed with bes, nag, zn
    15. Domains for 3nxq:
      1. 1918526Domain d3nxqa_: 3nxq A: [199976]
        automated match to d3nxqb_
        complexed with cl, p6g, peg, pg4, rx4, zn; mutant
      2. 1918527Domain d3nxqb_: 3nxq B: [196425]
        automated match to d2xyda_
        complexed with cl, p6g, peg, pg4, rx4, zn; mutant
    16. Domains for 3qnf:
      1. 1918560Domain d3qnfa2: 3qnf A:255-529 [248932]
        Other proteins in same PDB: d3qnfa1, d3qnfa3, d3qnfb1, d3qnfb3, d3qnfb4, d3qnfc1, d3qnfc3, d3qnfc4
        automated match to d2yd0a2
        complexed with nag, zn
      2. 1918561Domain d3qnfb2: 3qnf B:255-529 [248935]
        Other proteins in same PDB: d3qnfa1, d3qnfa3, d3qnfb1, d3qnfb3, d3qnfb4, d3qnfc1, d3qnfc3, d3qnfc4
        automated match to d2yd0a2
        complexed with nag, zn
      3. 1918562Domain d3qnfc2: 3qnf C:255-529 [248939]
        Other proteins in same PDB: d3qnfa1, d3qnfa3, d3qnfb1, d3qnfb3, d3qnfb4, d3qnfc1, d3qnfc3, d3qnfc4
        automated match to d2yd0a2
        complexed with nag, zn
    17. Domains for 3se6:
      1. 1918565Domain d3se6a2: 3se6 A:272-546 [249386]
        Other proteins in same PDB: d3se6a1, d3se6a3, d3se6a4, d3se6b1, d3se6b3, d3se6b4
        automated match to d2yd0a2
        complexed with lys, mes, nag, zn
      2. 1918566Domain d3se6b2: 3se6 B:272-546 [249390]
        Other proteins in same PDB: d3se6a1, d3se6a3, d3se6a4, d3se6b1, d3se6b3, d3se6b4
        automated match to d2yd0a2
        complexed with lys, mes, nag, zn
    18. Domains for 4bxk:
      1. 1918552Domain d4bxka_: 4bxk A: [229482]
        automated match to d3nxqb_
        complexed with 1iu, cl, nag, p6g, peg, pg4, zn
      2. 1918553Domain d4bxkb_: 4bxk B: [227914]
        automated match to d3nxqb_
        complexed with 1iu, cl, nag, p6g, peg, pg4, zn
    19. Domains for 4bzs:
      1. 1918554Domain d4bzsa_: 4bzs A: [237111]
        automated match to d3nxqb_
        complexed with 9x6, cl, k26, p6g, pe4, peg, pg4, zn
      2. 1918555Domain d4bzsb_: 4bzs B: [237110]
        automated match to d3nxqb_
        complexed with 9x6, cl, k26, p6g, pe4, peg, pg4, zn
    20. Domains for 4ca6:
      1. 1918534Domain d4ca6a_: 4ca6 A: [229561]
        automated match to d2xyda_
        complexed with 3ef, cl, p6g, peg, pg4, zn
      2. 1918535Domain d4ca6b_: 4ca6 B: [229559]
        automated match to d2xyda_
        complexed with 3ef, cl, p6g, peg, pg4, zn
    21. Domains for 4dd8:
      1. 1918528Domain d4dd8a_: 4dd8 A: [195234]
        automated match to d1r54a_
        complexed with bat, ca, cl, k, na, zn
      2. 1918529Domain d4dd8b_: 4dd8 B: [195235]
        automated match to d1r54a_
        complexed with bat, ca, cl, k, na, zn
      3. 1918530Domain d4dd8c_: 4dd8 C: [195237]
        automated match to d1r54a_
        complexed with bat, ca, cl, k, na, zn
      4. 1918531Domain d4dd8d_: 4dd8 D: [195236]
        automated match to d1r54a_
        complexed with bat, ca, cl, k, na, zn
    22. Domain for 4fyq:
    23. Domain for 4fyr:
    24. Domain for 4fyt:
    25. Domains for 4jbs:
      1. 1918569Domain d4jbsa2: 4jbs A:272-546 [252873]
        Other proteins in same PDB: d4jbsa1, d4jbsa3, d4jbsa4, d4jbsb1, d4jbsb3, d4jbsb4
        automated match to d2yd0a2
        complexed with imd, nag, p52, zn
      2. 1918570Domain d4jbsb2: 4jbs B:272-546 [252877]
        Other proteins in same PDB: d4jbsa1, d4jbsa3, d4jbsa4, d4jbsb1, d4jbsb3, d4jbsb4
        automated match to d2yd0a2
        complexed with imd, nag, p52, zn
    26. Domains for 4p8q:
      1. 1918571Domain d4p8qa2: 4p8q A:367-615 [261382]
        Other proteins in same PDB: d4p8qa1, d4p8qa3, d4p8qa4, d4p8qb1, d4p8qb3, d4p8qb4
        automated match to d3se6b2
        complexed with nag, unl, zn
      2. 1918572Domain d4p8qb2: 4p8q B:367-615 [263457]
        Other proteins in same PDB: d4p8qa1, d4p8qa3, d4p8qa4, d4p8qb1, d4p8qb3, d4p8qb4
        automated match to d4p8qa2
        complexed with nag, unl, zn
    27. Domains for 4pj6:
      1. 1918567Domain d4pj6a2: 4pj6 A:367-615 [267175]
        Other proteins in same PDB: d4pj6a1, d4pj6a3, d4pj6a4, d4pj6b1, d4pj6b3, d4pj6b4
        automated match to d4p8qa2
        complexed with lys, nag, zn
      2. 1918568Domain d4pj6b2: 4pj6 B:367-615 [267179]
        Other proteins in same PDB: d4pj6a1, d4pj6a3, d4pj6a4, d4pj6b1, d4pj6b3, d4pj6b4
        automated match to d4p8qa2
        complexed with lys, nag, zn
    28. Domains for 4ufa:
      1. 1918550Domain d4ufaa_: 4ufa A: [277946]
        automated match to d2c6fa_
        complexed with asp, cl, nag, p6g, peg, sac, zn
      2. 1918551Domain d4ufab_: 4ufa B: [277945]
        automated match to d2c6fa_
        complexed with asp, cl, nag, p6g, peg, sac, zn
    29. Domains for 4ufb:
      1. 1918546Domain d4ufba_: 4ufb A: [277950]
        automated match to d2c6fa_
        complexed with cl, lys, p6g, peg, pro, zn
      2. 1918547Domain d4ufbb_: 4ufb B: [277947]
        automated match to d2c6fa_
        complexed with cl, lys, p6g, peg, pro, zn
      3. 1918548Domain d4ufbc_: 4ufb C: [277948]
        automated match to d2c6fa_
        complexed with cl, lys, p6g, peg, pro, zn
      4. 1918549Domain d4ufbd_: 4ufb D: [277949]
        automated match to d2c6fa_
        complexed with cl, lys, p6g, peg, pro, zn
    30. Domain for 4wk7:
    31. Domain for 4wke:
    32. Domain for 4wki:
    33. Domains for 5am9:
      1. 1918542Domain d5am9a_: 5am9 A: [280244]
        automated match to d2c6fa_
        complexed with ca, cl, gln, glu, lys, na, p6g, peg, val, zn
      2. 1918543Domain d5am9b_: 5am9 B: [280242]
        automated match to d2c6fa_
        complexed with ca, cl, gln, glu, lys, na, p6g, peg, val, zn
      3. 1918544Domain d5am9c_: 5am9 C: [280243]
        automated match to d2c6fa_
        complexed with ca, cl, gln, glu, lys, na, p6g, peg, val, zn
      4. 1918545Domain d5am9d_: 5am9 D: [280240]
        automated match to d2c6fa_
        complexed with ca, cl, gln, glu, lys, na, p6g, peg, val, zn
    34. Domains for 5ama:
      1. 1918538Domain d5amaa_: 5ama A: [280248]
        automated match to d2c6fa_
        complexed with asp, cl, nag, p6g, peg, ser, zn
      2. 1918539Domain d5amab_: 5ama B: [280247]
        automated match to d2c6fa_
        complexed with asp, cl, nag, p6g, peg, ser, zn
      3. 1918540Domain d5amac_: 5ama C: [280249]
        automated match to d2c6fa_
        complexed with asp, cl, nag, p6g, peg, ser, zn
      4. 1918541Domain d5amad_: 5ama D: [280250]
        automated match to d2c6fa_
        complexed with asp, cl, nag, p6g, peg, ser, zn
    35. Domains for 5amc:
      1. 1918532Domain d5amca_: 5amc A: [280245]
        automated match to d2c6fa_
        complexed with cl, gly, niy, p6g, peg, pg4, zn
      2. 1918533Domain d5amcb_: 5amc B: [280246]
        automated match to d2c6fa_
        complexed with cl, gly, niy, p6g, peg, pg4, zn
    36. Domains for 5cu5:
      1. 1918573Domain d5cu5a2: 5cu5 A:272-546 [277107]
        Other proteins in same PDB: d5cu5a1, d5cu5a3, d5cu5a4, d5cu5b1, d5cu5b3, d5cu5b4
        automated match to d3se6a2
        complexed with man, nag
      2. 1918574Domain d5cu5b2: 5cu5 B:272-546 [277111]
        Other proteins in same PDB: d5cu5a1, d5cu5a3, d5cu5a4, d5cu5b1, d5cu5b3, d5cu5b4
        automated match to d3se6a2
        complexed with man, nag
  7. 1918578Mycobacterium tuberculosis [TaxId:83332] [256168] (1 PDB entry)
    • Domains for 3zuk:
      1. 1918579Domain d3zuka_: 3zuk A: [250845]
        automated match to d3dwba_
        complexed with 211, act, ca, cl, peg, pg4, pge, rdf, so4, zn
      2. 1918580Domain d3zukb_: 3zuk B: [250846]
        automated match to d3dwba_
        complexed with 211, act, ca, cl, peg, pg4, pge, rdf, so4, zn
  8. 1918581Neisseria meningitidis [TaxId:122586] [259500] (1 PDB entry)
  9. 1918583Protobothrops mucrosquamatus [TaxId:103944] [226718] (1 PDB entry)
  10. 1918586Serratia marcescens [TaxId:615] [280300] (1 PDB entry)
  11. 1918588Tannerella forsythia [TaxId:203275] [268687] (1 PDB entry)
  12. 1918591Thermoplasma acidophilum [TaxId:273075] [256033] (1 PDB entry)
  13. 1918594Thermus thermophilus HB8 [TaxId:300852] [188073] (1 PDB entry)
  14. 1918598Thermus thermophilus [TaxId:262724] [188942] (1 PDB entry)

More info for Protein automated matches from d.92.1.0: automated matches

Timeline for Protein automated matches from d.92.1.0: automated matches: