Lineage for Protein: automated matches

  1. Root: SCOPe 2.03
  2. 1396887Class d: Alpha and beta proteins (a+b) [53931] (376 folds)
  3. 1423492Fold d.92: Zincin-like [55485] (2 superfamilies)
    contains mixed beta sheet with connection over free side of the sheet
  4. 1423493Superfamily d.92.1: Metalloproteases ("zincins"), catalytic domain [55486] (18 families) (S)
  5. 1424465Family d.92.1.0: automated matches [191495] (1 protein)
    not a true family
  6. 1424466Protein automated matches [190805] (8 species)
    not a true protein

Species:

  1. 1424467Bacillus subtilis [TaxId:1423] [188945] (1 PDB entry)
  2. 1424470Clostridium botulinum [TaxId:1491] [193827] (5 PDB entries)
    1. Domain for 2fpq:
    2. Domain for 2qn0:
    3. Domains for 2w2d:
      1. 1424474Domain d2w2db1: 2w2d B:449-547 [206575]
        automated match to d3btaa3
        complexed with act, cl, gol, so4, zn
      2. 1424475Domain d2w2dd1: 2w2d D:449-547 [206576]
        automated match to d3btaa3
        complexed with act, cl, gol, so4, zn
    4. Domain for 2xhl:
    5. Domain for 3deb:
  3. 1424477Clostridium tetani [TaxId:1513] [224976] (1 PDB entry)
  4. 1424479Clostridium tetani [TaxId:212717] [236546] (1 PDB entry)
  5. 1424481Human (Homo sapiens) [TaxId:9606] [188286] (15 PDB entries)
    1. Domains for 2xyd:
      1. 1424502Domain d2xyda_: 2xyd A: [170476]
        automated match to d1o86a_
        complexed with 3es, cl, p6g, peg, pg4, zn
      2. 1424503Domain d2xydb_: 2xyd B: [170477]
        automated match to d1o86a_
        complexed with 3es, cl, p6g, peg, pg4, zn
    2. Domains for 3b8z:
      1. 1424487Domain d3b8za_: 3b8z A: [172500]
        automated match to d1r54a_
        complexed with 294, ca, zn
      2. 1424488Domain d3b8zb_: 3b8z B: [172501]
        automated match to d1r54a_
        complexed with 294, ca, zn
    3. Domain for 3dwb:
    4. Domain for 3edg:
    5. Domain for 3edh:
    6. Domain for 3edi:
    7. Domains for 3hy7:
      1. 1424490Domain d3hy7a_: 3hy7 A: [177913]
        automated match to d1r54a_
        complexed with 097, ca, zn
      2. 1424491Domain d3hy7b_: 3hy7 B: [177914]
        automated match to d1r54a_
        complexed with 097, ca, zn
    8. Domains for 3hy9:
      1. 1424492Domain d3hy9a_: 3hy9 A: [177915]
        automated match to d1r54a_
        complexed with 098, ca, zn
      2. 1424493Domain d3hy9b_: 3hy9 B: [191740]
        automated match to d3b8za_
        complexed with 098, ca, zn
    9. Domains for 3hyg:
      1. 1424485Domain d3hyga_: 3hyg A: [177943]
        automated match to d1r54a_
        complexed with 099, ca, zn
      2. 1424486Domain d3hygb_: 3hyg B: [177944]
        automated match to d1r54a_
        complexed with 099, ca, zn
    10. Domain for 3ljt:
    11. Domains for 3nxq:
      1. 1424494Domain d3nxqa_: 3nxq A: [199976]
        automated match to d3nxqb_
        complexed with cl, p6g, peg, pg4, rx4, zn; mutant
      2. 1424495Domain d3nxqb_: 3nxq B: [196425]
        automated match to d2xyda_
        complexed with cl, p6g, peg, pg4, rx4, zn; mutant
    12. Domains for 4bxk:
      1. 1424504Domain d4bxka_: 4bxk A: [229482]
        automated match to d3nxqb_
        complexed with 1iu, cl, nag, p6g, peg, pg4, zn
      2. 1424505Domain d4bxkb_: 4bxk B: [227914]
        automated match to d3nxqb_
        complexed with 1iu, cl, nag, p6g, peg, pg4, zn
    13. Domains for 4bzs:
      1. 1424506Domain d4bzsa_: 4bzs A: [237111]
        automated match to d3nxqb_
        complexed with 9x6, cl, k26, p6g, pe4, peg, pg4, zn
      2. 1424507Domain d4bzsb_: 4bzs B: [237110]
        automated match to d3nxqb_
        complexed with 9x6, cl, k26, p6g, pe4, peg, pg4, zn
    14. Domains for 4ca6:
      1. 1424500Domain d4ca6a_: 4ca6 A: [229561]
        automated match to d2xyda_
        complexed with 3ef, cl, p6g, peg, pg4, zn
      2. 1424501Domain d4ca6b_: 4ca6 B: [229559]
        automated match to d2xyda_
        complexed with 3ef, cl, p6g, peg, pg4, zn
    15. Domains for 4dd8:
      1. 1424496Domain d4dd8a_: 4dd8 A: [195234]
        automated match to d1r54a_
        complexed with bat, ca, cl, k, na, zn
      2. 1424497Domain d4dd8b_: 4dd8 B: [195235]
        automated match to d1r54a_
        complexed with bat, ca, cl, k, na, zn
      3. 1424498Domain d4dd8c_: 4dd8 C: [195237]
        automated match to d1r54a_
        complexed with bat, ca, cl, k, na, zn
      4. 1424499Domain d4dd8d_: 4dd8 D: [195236]
        automated match to d1r54a_
        complexed with bat, ca, cl, k, na, zn
  6. 1424509Protobothrops mucrosquamatus [TaxId:103944] [226718] (1 PDB entry)
  7. 1424512Thermus thermophilus [TaxId:262724] [188942] (1 PDB entry)
  8. 1424515Thermus thermophilus [TaxId:300852] [188073] (1 PDB entry)

More info for Protein automated matches from d.92.1.0: automated matches

Timeline for Protein automated matches from d.92.1.0: automated matches: