Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2017115Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 2017116Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 2026186Family b.1.1.4: I set domains [49159] (39 protein domains)
  6. 2026582Protein automated matches [190803] (2 species)
    not a true protein

Species:

  1. 2026583Human (Homo sapiens) [TaxId:9606] [188070] (30 PDB entries)
    1. Domains for 1vdg:
      1. 2026623Domain d1vdga1: 1vdg A:1-97 [202938]
        automated match to d1g0xa1
      2. 2026624Domain d1vdga2: 1vdg A:98-197 [202939]
        automated match to d1g0xa2
      3. 2026625Domain d1vdgb1: 1vdg B:1-97 [202940]
        automated match to d1g0xa1
      4. 2026626Domain d1vdgb2: 1vdg B:98-197 [202941]
        automated match to d1g0xa2
    2. Domains for 1waa:
      1. 2026590Domain d1waaa_: 1waa A: [161930]
        automated match to d1tita_
        complexed with zn
      2. 2026591Domain d1waab_: 1waa B: [161931]
        automated match to d1tita_
        complexed with zn
      3. 2026592Domain d1waac_: 1waa C: [161932]
        automated match to d1tita_
        complexed with zn
      4. 2026593Domain d1waad_: 1waa D: [161933]
        automated match to d1tita_
        complexed with zn
      5. 2026594Domain d1waae_: 1waa E: [161934]
        automated match to d1tita_
        complexed with zn
      6. 2026595Domain d1waaf_: 1waa F: [161935]
        automated match to d1tita_
        complexed with zn
    3. Domain for 1wvz:
    4. Domain for 2gw5:
    5. Domains for 2otp:
      1. 2026621Domain d2otpa2: 2otp A:96-196 [205365]
        Other proteins in same PDB: d2otpa1, d2otpb1
        automated match to d1g0xa2
      2. 2026622Domain d2otpb2: 2otp B:96-196 [205367]
        Other proteins in same PDB: d2otpa1, d2otpb1
        automated match to d1g0xa2
    6. Domain for 2v6h:
    7. Domains for 2xac:
      1. 2026635Domain d2xacc_: 2xac C: [169975]
        Other proteins in same PDB: d2xaca_, d2xacb_
        automated match to d1qsva_
        complexed with gol
      2. 2026636Domain d2xacx_: 2xac X: [169976]
        Other proteins in same PDB: d2xaca_, d2xacb_
        automated match to d1qsva_
        complexed with gol
    8. Domains for 3ay4:
      1. 2026609Domain d3ay4c1: 3ay4 C:5-86 [208426]
        Other proteins in same PDB: d3ay4a1, d3ay4a2, d3ay4b1, d3ay4b2
        automated match to d1fnla1
      2. 2026610Domain d3ay4c2: 3ay4 C:87-174 [208427]
        Other proteins in same PDB: d3ay4a1, d3ay4a2, d3ay4b1, d3ay4b2
        automated match to d1fnla2
    9. Domains for 3d5o:
      1. 2026617Domain d3d5of1: 3d5o F:1-85 [199224]
        Other proteins in same PDB: d3d5oa_, d3d5ob_, d3d5oc_, d3d5od_, d3d5oe_
        automated match to d2fcba1
        complexed with gol, nag, so4
      2. 2026618Domain d3d5of2: 3d5o F:86-171 [199225]
        Other proteins in same PDB: d3d5oa_, d3d5ob_, d3d5oc_, d3d5od_, d3d5oe_
        automated match to d2fcba2
        complexed with gol, nag, so4
    10. Domains for 3h8n:
      1. 2026619Domain d3h8na1: 3h8n A:6-103 [232434]
        automated match to d1b6ua1
      2. 2026620Domain d3h8na2: 3h8n A:104-200 [232439]
        automated match to d1b6ua2
    11. Domains for 3oj2:
      1. 2026613Domain d3oj2c1: 3oj2 C:151-250 [200091]
        Other proteins in same PDB: d3oj2a_, d3oj2b_, d3oj2c2, d3oj2d2
        automated match to d1ev2g1
        complexed with so4; mutant
      2. 2026614Domain d3oj2d1: 3oj2 D:151-250 [200093]
        Other proteins in same PDB: d3oj2a_, d3oj2b_, d3oj2c2, d3oj2d2
        automated match to d1ev2g1
        complexed with so4; mutant
    12. Domain for 3ojm:
    13. Domains for 3ry4:
      1. 2026587Domain d3ry4a1: 3ry4 A:4-88 [216113]
        automated match to d1fcga1
        complexed with gol, nag
      2. 2026588Domain d3ry4a2: 3ry4 A:89-173 [216114]
        automated match to d1fcga2
        complexed with gol, nag
    14. Domains for 3ry5:
      1. 2026607Domain d3ry5a1: 3ry5 A:4-88 [216115]
        automated match to d2fcba1
      2. 2026608Domain d3ry5a2: 3ry5 A:89-173 [216116]
        automated match to d2fcba2
    15. Domains for 3sgj:
      1. 2026605Domain d3sgjc1: 3sgj C:6-86 [216399]
        Other proteins in same PDB: d3sgja1, d3sgja2, d3sgjb1, d3sgjb2
        automated match to d1fnla1
        complexed with mli
      2. 2026606Domain d3sgjc2: 3sgj C:87-174 [216400]
        Other proteins in same PDB: d3sgja1, d3sgja2, d3sgjb1, d3sgjb2
        automated match to d1fnla2
        complexed with mli
    16. Domains for 3sgk:
      1. 2026611Domain d3sgkc1: 3sgk C:5-86 [216405]
        Other proteins in same PDB: d3sgka1, d3sgka2, d3sgkb1, d3sgkb2
        automated match to d1fnla1
        complexed with mli
      2. 2026612Domain d3sgkc2: 3sgk C:87-174 [216406]
        Other proteins in same PDB: d3sgka1, d3sgka2, d3sgkb1, d3sgkb2
        automated match to d1fnla2
        complexed with mli
    17. Domains for 3wjj:
      1. 2026627Domain d3wjjc1: 3wjj C:5-85 [233974]
        Other proteins in same PDB: d3wjja1, d3wjja2, d3wjjb1, d3wjjb2
        automated match to d3wjlc1
      2. 2026628Domain d3wjjc2: 3wjj C:86-168 [233975]
        Other proteins in same PDB: d3wjja1, d3wjja2, d3wjjb1, d3wjjb2
        automated match to d3wjlc2
    18. Domains for 3wjl:
      1. 2026633Domain d3wjlc1: 3wjl C:3-85 [229031]
        Other proteins in same PDB: d3wjla1, d3wjla2, d3wjlb1, d3wjlb2
        automated match to d2fcba1
        complexed with nag
      2. 2026634Domain d3wjlc2: 3wjl C:86-170 [229032]
        Other proteins in same PDB: d3wjla1, d3wjla2, d3wjlb1, d3wjlb2
        automated match to d2fcba2
        complexed with nag
    19. Domains for 3wn5:
      1. 2026629Domain d3wn5c1: 3wn5 C:1-83 [262432]
        Other proteins in same PDB: d3wn5a1, d3wn5a2, d3wn5b1, d3wn5b2, d3wn5d1, d3wn5d2, d3wn5e1, d3wn5e2
        automated match to d1fnla1
        complexed with iod, nag
      2. 2026630Domain d3wn5c2: 3wn5 C:84-171 [262433]
        Other proteins in same PDB: d3wn5a1, d3wn5a2, d3wn5b1, d3wn5b2, d3wn5d1, d3wn5d2, d3wn5e1, d3wn5e2
        automated match to d1fnla2
        complexed with iod, nag
      3. 2026631Domain d3wn5f1: 3wn5 F:1-83 [261182]
        Other proteins in same PDB: d3wn5a1, d3wn5a2, d3wn5b1, d3wn5b2, d3wn5d1, d3wn5d2, d3wn5e1, d3wn5e2
        automated match to d1fnla1
        complexed with iod, nag
      4. 2026632Domain d3wn5f2: 3wn5 F:84-172 [261183]
        Other proteins in same PDB: d3wn5a1, d3wn5a2, d3wn5b1, d3wn5b2, d3wn5d1, d3wn5d2, d3wn5e1, d3wn5e2
        automated match to d1fnla2
        complexed with iod, nag
    20. Domain for 4ckv:
    21. Domains for 4cl7:
      1. 2026600Domain d4cl7a_: 4cl7 A: [268150]
        automated match to d1qsza_
        complexed with co, edo
      2. 2026601Domain d4cl7b_: 4cl7 B: [268148]
        automated match to d1qsza_
        complexed with co, edo
      3. 2026602Domain d4cl7c_: 4cl7 C: [268147]
        automated match to d1qsza_
        complexed with co, edo
      4. 2026603Domain d4cl7d_: 4cl7 D: [268151]
        automated match to d1qsza_
        complexed with co, edo
    22. Domain for 4crp:
    23. Domains for 4hbq:
      1. 2026584Domain d4hbqa2: 4hbq A:91-202 [222485]
        Other proteins in same PDB: d4hbqa1, d4hbqa3, d4hbqb1, d4hbqb3
        automated match to d1bqsa2
        complexed with gol, nag, so4; mutant
      2. 2026585Domain d4hbqb2: 4hbq B:91-202 [222487]
        Other proteins in same PDB: d4hbqa1, d4hbqa3, d4hbqb1, d4hbqb3
        automated match to d1bqsa2
        complexed with gol, nag, so4; mutant
    24. Domains for 4hc1:
      1. 2026615Domain d4hc1a2: 4hc1 A:91-202 [222491]
        Other proteins in same PDB: d4hc1a1, d4hc1a3, d4hc1b1, d4hc1b3, d4hc1l1, d4hc1l2, d4hc1n1, d4hc1n2
        automated match to d1bqsa2
        complexed with nag; mutant
      2. 2026616Domain d4hc1b2: 4hc1 B:91-202 [222493]
        Other proteins in same PDB: d4hc1a1, d4hc1a3, d4hc1b1, d4hc1b3, d4hc1l1, d4hc1l2, d4hc1n1, d4hc1n2
        automated match to d1bqsa2
        complexed with nag; mutant
    25. Domains for 4hcr:
      1. 2026597Domain d4hcra2: 4hcr A:91-202 [222514]
        Other proteins in same PDB: d4hcra1, d4hcrb1, d4hcrl1, d4hcrl2, d4hcrn1, d4hcrn2
        automated match to d1bqsa2
      2. 2026598Domain d4hcrb2: 4hcr B:91-202 [222516]
        Other proteins in same PDB: d4hcra1, d4hcrb1, d4hcrl1, d4hcrl2, d4hcrn1, d4hcrn2
        automated match to d1bqsa2
    26. Domain for 4hd9:
    27. Domains for 5aea:
      1. 2273199Domain d5aeaa1: 5aea A:1-97 [316500]
        Other proteins in same PDB: d5aeaa2, d5aeab2
        automated match to d2ncma_
        complexed with flc
      2. 2273201Domain d5aeab1: 5aea B:1-97 [316502]
        Other proteins in same PDB: d5aeaa2, d5aeab2
        automated match to d2ncma_
        complexed with flc
    28. Domains for 5bw7:
      1. 2026637Domain d5bw7c1: 5bw7 C:10-86 [278024]
        Other proteins in same PDB: d5bw7a1, d5bw7a2, d5bw7b1, d5bw7b2
        automated match to d1fnla1
        complexed with bma, cl, fuc, gal, man, nag; mutant
      2. 2026638Domain d5bw7c2: 5bw7 C:87-174 [278025]
        Other proteins in same PDB: d5bw7a1, d5bw7a2, d5bw7b1, d5bw7b2
        automated match to d1fnla2
        complexed with bma, cl, fuc, gal, man, nag; mutant
    29. Domain for 5xje:
    30. Domain for 5xjf:
  2. 2026641Mouse (Mus musculus) [TaxId:10090] [256051] (1 PDB entry)

More info for Protein automated matches from b.1.1.4: I set domains

Timeline for Protein automated matches from b.1.1.4: I set domains: