SCOPe 2.08: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.08
Class b: All beta proteins [48724] (180 folds)
Fold b.85: beta-clip [51268] (7 superfamilies)
double-stranded ribbon sharply bent in two places; the ribbon ends form incomplete barrel; jelly-roll
Superfamily b.85.4: dUTPase-like [51283] (2 families)
forms tight trimer through an additional beta-sheet in each subunit
subunit beta-sheets are orthogonally packed around the three-fold axis
Family b.85.4.1: dUTPase-like [51284] (5 proteins)
Protein automated matches [190798] (9 species)
not a true protein

Species:

Burkholderia thailandensis [TaxId:271848] [235375] (1 PDB entry)
- Domain for 4lhr:
  - Domain d4lhra1: 4lhr A:1-132 [235376]
    Other proteins in same PDB: d4lhra2
    automated match to d1rn8a_
    complexed with pg4
Chlorella variabilis [TaxId:554065] [195003] (1 PDB entry)
- Domain for 3so2:
  - Domain d3so2a_: 3so2 A: [195004]
    automated match to d1q5ha_
Coxiella burnetii [TaxId:777] [196147] (1 PDB entry)
- Domain for 3tqz:
  - Domain d3tqza_: 3tqz A: [196148]
    automated match to d1rn8a_
    complexed with so4
Escherichia coli [TaxId:83333] [373377] (1 PDB entry)
- Domains for 6hde:
  1. Domain d6hdea_: 6hde A: [373416]
    automated match to d1rnja_
    complexed with dup, mg; mutant
  2. Domain d6hdeb_: 6hde B: [373378]
    automated match to d1rnja_
    complexed with dup, mg; mutant
  3. Domain d6hdec_: 6hde C: [373445]
    automated match to d1rnja_
    complexed with dup, mg; mutant
Human herpesvirus 4 [TaxId:10377] [231386] (4 PDB entries)
1. Domains for 2we0:
  1. Domain d2we0a1: 2we0 A:5-115 [231387]
    automated match to d2bsya1
    complexed with so4, teo, ump; mutant
  2. Domain d2we0a2: 2we0 A:121-256 [231388]
    automated match to d2bsya2
    complexed with so4, teo, ump; mutant
2. Domains for 2we1:
  1. Domain d2we1a1: 2we1 A:4-116 [231389]
    automated match to d2bsya1
    complexed with so4, ump; mutant
  2. Domain d2we1a2: 2we1 A:121-256 [231390]
    automated match to d2bsya2
    complexed with so4, ump; mutant
3. Domains for 2we2:
  1. Domain d2we2a1: 2we2 A:4-115 [231391]
    automated match to d2bsya1
    complexed with so4, ump; mutant
  2. Domain d2we2a2: 2we2 A:121-256 [231392]
    automated match to d2bsya2
    complexed with so4, ump; mutant
4. Domains for 2we3:
  1. Domain d2we3a1: 2we3 A:1-115 [231393]
    automated match to d2bsya1
    complexed with dut, mg, so4; mutant
  2. Domain d2we3a2: 2we3 A:129-256 [231394]
    automated match to d2bsya2
    complexed with dut, mg, so4; mutant
Methanocaldococcus jannaschii [TaxId:2190] [226814] (2 PDB entries)
1. Domain for 2hxe:
  - Domain d2hxea_: 2hxe A: [304036]
    automated match to d3gf0a_
    complexed with mg, pop; mutant
2. Domain for 3gf0:
  - Domain d3gf0a_: 3gf0 A: [210517]
    automated match to d1pkha_
    complexed with mg, pop; mutant
Mycobacterium abscessus [TaxId:561007] [226542] (1 PDB entry)
- Domain for 4gk6:
  - Domain d4gk6a1: 4gk6 A:2-133 [221973]
    Other proteins in same PDB: d4gk6a2
    automated match to d1sjnb_
    complexed with cl
Mycobacterium tuberculosis [TaxId:1773] [189128] (6 PDB entries)
1. Domain for 3h6d:
  - Domain d3h6da1: 3h6d A:1-133 [177227]
    Other proteins in same PDB: d3h6da2
    automated match to d1sixa_
    complexed with dup, mg, trs; mutant
2. Domain for 3hza:
  - Domain d3hzaa1: 3hza A:1-154 [177951]
    Other proteins in same PDB: d3hzaa2
    automated match to d1sixa_
    complexed with dup, gol, mg, trs; mutant
3. Domain for 3i93:
  - Domain d3i93a1: 3i93 A:2-134 [178155]
    Other proteins in same PDB: d3i93a2
    automated match to d1sixa_
    complexed with dup, mg, trs; mutant
4. Domain for 3loj:
  - Domain d3loja1: 3loj A:-1-154 [180478]
    Other proteins in same PDB: d3loja2
    automated match to d1sixa_
    complexed with dup, gol, mg, mn, trs; mutant
5. Domain for 4gcy:
  - Domain d4gcya1: 4gcy A:1-154 [221846]
    Other proteins in same PDB: d4gcya2
    automated match to d1sixa_
    complexed with dup, gol, mg, trs; mutant
6. Domain for 5edd:
  - Domain d5edda1: 5edd A:1-133 [324628]
    Other proteins in same PDB: d5edda2
    automated match to d1sjnb_
    complexed with dup, mg, trs; mutant
Plasmodium falciparum [TaxId:36329] [188061] (4 PDB entries)
1. Domains for 1vyq:
  1. Domain d1vyqb_: 1vyq B: [120549]
    Other proteins in same PDB: d1vyqa1
    automated match to d1vyqa1
    complexed with dux
  2. Domain d1vyqc_: 1vyq C: [120550]
    Other proteins in same PDB: d1vyqa1
    automated match to d1vyqa1
    complexed with dux
2. Domains for 2y8c:
  1. Domain d2y8ca_: 2y8c A: [195845]
    automated match to d1vyqa1
    complexed with duq, so4
  2. Domain d2y8cb_: 2y8c B: [195844]
    automated match to d1vyqa1
    complexed with duq, so4
  3. Domain d2y8cc_: 2y8c C: [198688]
    automated match to d2y8ca_
    complexed with duq, so4
3. Domains for 3t60:
  1. Domain d3t60a_: 3t60 A: [216690]
    automated match to d2y8ca_
    complexed with dua, gol
  2. Domain d3t60b_: 3t60 B: [216691]
    automated match to d2y8ca_
    complexed with dua, gol
  3. Domain d3t60c_: 3t60 C: [216692]
    automated match to d2y8ca_
    complexed with dua, gol
4. Domains for 3t64:
  1. Domain d3t64a_: 3t64 A: [216693]
    automated match to d2y8ca_
    complexed with du3, so4
  2. Domain d3t64b_: 3t64 B: [216694]
    automated match to d2y8ca_
    complexed with du3, so4
  3. Domain d3t64c_: 3t64 C: [216695]
    automated match to d2y8ca_
    complexed with du3, so4

More info for Protein automated matches from b.85.4.1: dUTPase-like

Timeline for Protein automated matches from b.85.4.1: dUTPase-like:

Protein automated matches from b.85.4.1: dUTPase-like first appeared in SCOPe 2.01
Protein automated matches from b.85.4.1: dUTPase-like appears in SCOPe 2.07