Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2530962Class d: Alpha and beta proteins (a+b) [53931] (388 folds)
  3. 2594378Fold d.151: DNase I-like [56218] (1 superfamily)
    contains beta-sandwich; duplication of alpha+beta motif
  4. 2594379Superfamily d.151.1: DNase I-like [56219] (4 families) (S)
  5. 2594494Family d.151.1.0: automated matches [191468] (1 protein)
    not a true family
  6. 2594495Protein automated matches [190734] (14 species)
    not a true protein

Species:

  1. 2594496Archaeoglobus fulgidus [TaxId:2234] [188717] (1 PDB entry)
  2. 2594499Bacillus subtilis [TaxId:224308] [319245] (1 PDB entry)
  3. 2594501Methanosarcina mazei [TaxId:192952] [316349] (1 PDB entry)
  4. 2594503Methanothermobacter thermautotrophicus [TaxId:187420] [229730] (15 PDB entries)
    1. Domain for 3fzi:
    2. Domains for 3g00:
      1. 2594505Domain d3g00a1: 3g00 A:2-257 [232217]
        Other proteins in same PDB: d3g00a2
        automated match to d2jc5a_
        protein/DNA complex; complexed with gol, mpd, po4
      2. 2594506Domain d3g00b_: 3g00 B: [232218]
        Other proteins in same PDB: d3g00a2
        automated match to d2jc5a_
        protein/DNA complex; complexed with gol, mpd, po4
    3. Domain for 3g0a:
    4. Domains for 3g0r:
      1. 2594517Domain d3g0ra_: 3g0r A: [236707]
        automated match to d3g00a_
        protein/DNA complex; complexed with gol, na, pg4
      2. 2594518Domain d3g0rb_: 3g0r B: [236706]
        automated match to d3g00a_
        protein/DNA complex; complexed with gol, na, pg4
    5. Domains for 3g1k:
      1. 2594526Domain d3g1ka_: 3g1k A: [246228]
        automated match to d3g4tb_
        complexed with mg
      2. 2594527Domain d3g1kb_: 3g1k B: [246229]
        automated match to d3g4tb_
        complexed with mg
    6. Domains for 3g2c:
      1. 2594515Domain d3g2ca1: 3g2c A:2-257 [236709]
        Other proteins in same PDB: d3g2ca2
        automated match to d3fzia_
        protein/DNA complex; complexed with gol, mg, po4
      2. 2594516Domain d3g2cb_: 3g2c B: [236715]
        Other proteins in same PDB: d3g2ca2
        automated match to d3fzia_
        protein/DNA complex; complexed with gol, mg, po4
    7. Domains for 3g2d:
      1. 2594513Domain d3g2da_: 3g2d A: [236710]
        automated match to d3g00a_
        protein/DNA complex; complexed with gol, pg4, po4
      2. 2594514Domain d3g2db_: 3g2d B: [236708]
        automated match to d3g00a_
        protein/DNA complex; complexed with gol, pg4, po4
    8. Domain for 3g38:
    9. Domains for 3g3c:
      1. 2594524Domain d3g3ca_: 3g3c A: [246233]
        Other proteins in same PDB: d3g3cb2
        automated match to d3g4tb_
        protein/DNA complex; complexed with mg, mrd, po4
      2. 2594525Domain d3g3cb1: 3g3c B:2-257 [246234]
        Other proteins in same PDB: d3g3cb2
        automated match to d3g4tb_
        protein/DNA complex; complexed with mg, mrd, po4
    10. Domains for 3g3y:
      1. 2594519Domain d3g3ya1: 3g3y A:2-257 [236711]
        Other proteins in same PDB: d3g3ya2
        automated match to d3fzia_
        protein/DNA complex; complexed with gol, mg
      2. 2594520Domain d3g3yb_: 3g3y B: [236714]
        Other proteins in same PDB: d3g3ya2
        automated match to d3fzia_
        protein/DNA complex; complexed with gol, mg
    11. Domains for 3g4t:
      1. 2594522Domain d3g4ta_: 3g4t A: [236716]
        automated match to d3fzia_
        protein/DNA complex; complexed with mg, po4
      2. 2594523Domain d3g4tb_: 3g4t B: [236712]
        automated match to d3fzia_
        protein/DNA complex; complexed with mg, po4
    12. Domain for 3g91:
    13. Domains for 3ga6:
      1. 2594511Domain d3ga6a_: 3ga6 A: [236717]
        automated match to d3g00a_
        protein/DNA complex; complexed with gol, na, po4
      2. 2594512Domain d3ga6b_: 3ga6 B: [236713]
        automated match to d3g00a_
        protein/DNA complex; complexed with gol, na, po4
    14. Domain for 3w2x:
    15. Domains for 3w2y:
      1. 2594508Domain d3w2ya_: 3w2y A: [229731]
        automated match to d1vyba_
        complexed with fmt, mg, peg; mutant
      2. 2594509Domain d3w2yd_: 3w2y D: [233921]
        automated match to d3w2ya_
        complexed with fmt, mg, peg; mutant
  5. 2594529Neisseria meningitidis [TaxId:122586] [359578] (1 PDB entry)
  6. 2594531Neisseria meningitidis [TaxId:487] [187907] (2 PDB entries)
    1. Domain for 2jc4:
    2. Domain for 2jc5:
  7. 2594534Pseudomonas aeruginosa [TaxId:287] [226583] (3 PDB entries)
    1. Domain for 4f1r:
    2. Domain for 4jg3:
    3. Domains for 6o1k:
      1. 2594537Domain d6o1ka1: 6o1k A:1-259 [366232]
        Other proteins in same PDB: d6o1ka2, d6o1kb2, d6o1kc_, d6o1kd_, d6o1ke_, d6o1kf_, d6o1kg_, d6o1kh_, d6o1ki_, d6o1kj_, d6o1kk_, d6o1kl_, d6o1km_, d6o1kn_
        automated match to d2myia_
        protein/RNA complex
      2. 2594538Domain d6o1kb1: 6o1k B:1-259 [366225]
        Other proteins in same PDB: d6o1ka2, d6o1kb2, d6o1kc_, d6o1kd_, d6o1ke_, d6o1kf_, d6o1kg_, d6o1kh_, d6o1ki_, d6o1kj_, d6o1kk_, d6o1kl_, d6o1km_, d6o1kn_
        automated match to d2myia_
        protein/RNA complex
  8. 2594539Pseudomonas sp. [TaxId:1206777] [311520] (1 PDB entry)
  9. 2594541Salmonella enterica [TaxId:220341] [400769] (1 PDB entry)
  10. 2594543Salmonella enterica [TaxId:90370] [226727] (1 PDB entry)
  11. 2594545Silkworm (Bombyx mori) [TaxId:7091] [225293] (1 PDB entry)
  12. 2594547Staphylococcus aureus [TaxId:561307] [225915] (4 PDB entries)
    1. Domains for 3i41:
      1. 2594548Domain d3i41a_: 3i41 A: [211459]
        automated match to d1zwxa1
        mutant
      2. 2594549Domain d3i41b_: 3i41 B: [211460]
        automated match to d1zwxa1
        mutant
    2. Domains for 3i46:
      1. 2594552Domain d3i46a_: 3i46 A: [211462]
        automated match to d1zwxa1
        complexed with ca, cl; mutant
      2. 2594553Domain d3i46b_: 3i46 B: [211463]
        automated match to d1zwxa1
        complexed with ca, cl; mutant
    3. Domains for 3i48:
      1. 2594550Domain d3i48a_: 3i48 A: [211464]
        automated match to d1zwxa1
        complexed with mg, po4; mutant
      2. 2594551Domain d3i48b_: 3i48 B: [211465]
        automated match to d1zwxa1
        complexed with mg, po4; mutant
    4. Domains for 3i5v:
      1. 2594554Domain d3i5va_: 3i5v A: [211496]
        automated match to d1zwxa1
        complexed with dga
      2. 2594555Domain d3i5vb_: 3i5v B: [211497]
        automated match to d1zwxa1
        complexed with dga
      3. 2594556Domain d3i5vc_: 3i5v C: [211498]
        automated match to d1zwxa1
        complexed with dga
      4. 2594557Domain d3i5vd_: 3i5v D: [211499]
        automated match to d1zwxa1
        complexed with dga
  13. 2594558Streptomyces griseocarneus [TaxId:51201] [256476] (2 PDB entries)
    1. Domain for 3wcx:
    2. Domain for 7cne:
  14. 2594561Sulfolobus islandicus [TaxId:930945] [326429] (1 PDB entry)

More info for Protein automated matches from d.151.1.0: automated matches

Timeline for Protein automated matches from d.151.1.0: automated matches: