Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2078560Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 2089841Superfamily c.1.22: UROD/MetE-like [51726] (3 families) (S)
  5. 2089888Family c.1.22.0: automated matches [191464] (1 protein)
    not a true family
  6. 2089889Protein automated matches [190717] (5 species)
    not a true protein

Species:

  1. 2089890Aquifex aeolicus [TaxId:63363] [188375] (1 PDB entry)
  2. 2089893Bacillus subtilis [TaxId:1423] [187867] (1 PDB entry)
  3. 2089898Candida albicans [TaxId:237561] [311396] (6 PDB entries)
    1. Domains for 4l5z:
      1. 2089905Domain d4l5za1: 4l5z A:1-403 [307670]
        automated match to d4qqua1
        complexed with hcs, zn
      2. 2089906Domain d4l5za2: 4l5z A:404-767 [307671]
        automated match to d4qqua2
        complexed with hcs, zn
    2. Domains for 4l61:
      1. 2089903Domain d4l61a1: 4l61 A:1-403 [307672]
        automated match to d4qqua1
        complexed with met, zn
      2. 2089904Domain d4l61a2: 4l61 A:404-766 [307673]
        automated match to d4qqua2
        complexed with met, zn
    3. Domains for 4l64:
      1. 2089907Domain d4l64a1: 4l64 A:1-403 [307674]
        automated match to d4qqua1
        complexed with c2f, zn
      2. 2089908Domain d4l64a2: 4l64 A:404-764 [307675]
        automated match to d4qqua2
        complexed with c2f, zn
    4. Domains for 4l65:
      1. 2089909Domain d4l65a1: 4l65 A:1-403 [307676]
        automated match to d4qqua1
        complexed with c2f, met, zn
      2. 2089910Domain d4l65a2: 4l65 A:404-767 [307677]
        automated match to d4qqua2
        complexed with c2f, met, zn
    5. Domains for 4l6h:
      1. 2089899Domain d4l6ha1: 4l6h A:1-403 [307678]
        automated match to d4qqua1
        complexed with hcs, mtx, zn
      2. 2089900Domain d4l6ha2: 4l6h A:404-767 [307679]
        automated match to d4qqua2
        complexed with hcs, mtx, zn
    6. Domains for 4l6o:
      1. 2089901Domain d4l6oa1: 4l6o A:1-403 [307680]
        automated match to d4qqua1
        complexed with gln, zn
      2. 2089902Domain d4l6oa2: 4l6o A:404-767 [307681]
        automated match to d4qqua2
        complexed with gln, zn
  4. 2089911Methanosarcina mazei [TaxId:2209] [193418] (2 PDB entries)
    1. Domains for 4ay7:
      1. 2089912Domain d4ay7a_: 4ay7 A: [193420]
        automated match to d1jpka_
        complexed with mg, zn
      2. 2089913Domain d4ay7b_: 4ay7 B: [201541]
        automated match to d4ay8a_
        complexed with mg, zn
    2. Domains for 4ay8:
      1. 2089914Domain d4ay8a_: 4ay8 A: [193419]
        automated match to d1jpka_
        complexed with com, gol, mrd, zn
      2. 2089915Domain d4ay8b_: 4ay8 B: [201542]
        automated match to d4ay8a_
        complexed with com, gol, mrd, zn
  5. 2089916Yeast (Candida albicans) [TaxId:5476] [267869] (5 PDB entries)
    1. Domains for 3ppc:
      1. 2089919Domain d3ppca1: 3ppc A:1-403 [306250]
        Other proteins in same PDB: d3ppca3, d3ppcb3
        automated match to d4qqua1
        complexed with cl, zn
      2. 2089920Domain d3ppca2: 3ppc A:404-767 [306251]
        Other proteins in same PDB: d3ppca3, d3ppcb3
        automated match to d4qqua2
        complexed with cl, zn
      3. 2089921Domain d3ppcb1: 3ppc B:1-403 [306253]
        Other proteins in same PDB: d3ppca3, d3ppcb3
        automated match to d4qqua1
        complexed with cl, zn
      4. 2089922Domain d3ppcb2: 3ppc B:404-767 [306254]
        Other proteins in same PDB: d3ppca3, d3ppcb3
        automated match to d4qqua2
        complexed with cl, zn
    2. Domains for 3ppf:
      1. 2089923Domain d3ppfa1: 3ppf A:1-403 [306256]
        automated match to d4qqua1
      2. 2089924Domain d3ppfa2: 3ppf A:404-764 [306257]
        automated match to d4qqua2
    3. Domains for 3ppg:
      1. 2089917Domain d3ppga1: 3ppg A:1-403 [306258]
        automated match to d4qqua1
        complexed with zn
      2. 2089918Domain d3ppga2: 3ppg A:404-767 [306259]
        automated match to d4qqua2
        complexed with zn
    4. Domains for 3pph:
      1. 2089925Domain d3ppha1: 3pph A:1-403 [265202]
        automated match to d1u1ja1
      2. 2089926Domain d3ppha2: 3pph A:404-766 [265203]
        automated match to d1u1ja2
      3. 2089927Domain d3pphb1: 3pph B:1-403 [294565]
        automated match to d4qqua1
      4. 2089928Domain d3pphb2: 3pph B:404-767 [294566]
        automated match to d4qqua2
    5. Domains for 4qqu:
      1. 2089929Domain d4qqua1: 4qqu A:1-403 [268613]
        automated match to d3ppha1
        complexed with 39s, hcs, po4, zn
      2. 2089930Domain d4qqua2: 4qqu A:404-767 [268614]
        automated match to d3ppha2
        complexed with 39s, hcs, po4, zn

More info for Protein automated matches from c.1.22.0: automated matches

Timeline for Protein automated matches from c.1.22.0: automated matches: