SCOPe 2.06: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.06
Class b: All beta proteins [48724] (177 folds)
Fold b.29: Concanavalin A-like lectins/glucanases [49898] (1 superfamily)
sandwich; 12-14 strands in 2 sheets; complex topology
Superfamily b.29.1: Concanavalin A-like lectins/glucanases [49899] (26 families)
Family b.29.1.14: vp4 sialic acid binding domain [74907] (2 proteins)
automatically mapped to Pfam PF00426
Protein automated matches [190699] (3 species)
not a true protein

Species:

Porcine rotavirus (serotype 5 / strain tfr-41) [TaxId:31581] [318090] (1 PDB entry)
- Domains for 5ca6:
  1. Domain d5ca6a_: 5ca6 A: [318099]
    automated match to d2p3ka_
    complexed with fmt, gol, plm, vca
  2. Domain d5ca6b_: 5ca6 B: [318091]
    automated match to d2p3ka_
    complexed with fmt, gol, plm, vca
Porcine rotavirus [TaxId:31578] [189719] (3 PDB entries)
1. Domains for 3sis:
  1. Domain d3sisa1: 3sis A:64-224 [185416]
    Other proteins in same PDB: d3sisa2
    automated match to d1kqra_
    complexed with mn0, mpd, na
  2. Domain d3sisb_: 3sis B: [185417]
    Other proteins in same PDB: d3sisa2
    automated match to d1kqra_
    complexed with mn0, mpd, na
2. Domains for 3sit:
  1. Domain d3sita1: 3sit A:64-224 [185418]
    Other proteins in same PDB: d3sita2
    automated match to d1kqra_
    complexed with mrd, na
  2. Domain d3sitb_: 3sit B: [185419]
    Other proteins in same PDB: d3sita2
    automated match to d1kqra_
    complexed with mrd, na
3. Domains for 3tay:
  1. Domain d3taya1: 3tay A:64-224 [192512]
    Other proteins in same PDB: d3taya2, d3tayb2
    automated match to d2i2sa_
    complexed with ben, epe, mn0, mpd, na, so4
  2. Domain d3tayb1: 3tay B:64-224 [192819]
    Other proteins in same PDB: d3taya2, d3tayb2
    automated match to d2i2sa_
    complexed with ben, epe, mn0, mpd, na, so4
Rotavirus c [TaxId:10913] [187837] (1 PDB entry)
- Domains for 2i2s:
  1. Domain d2i2sa1: 2i2s A:64-224 [165375]
    Other proteins in same PDB: d2i2sa2, d2i2sb2
    automated match to d1kqra_
    complexed with gol, mna, mpd, na, so4
  2. Domain d2i2sb1: 2i2s B:64-224 [165376]
    Other proteins in same PDB: d2i2sa2, d2i2sb2
    automated match to d1kqra_
    complexed with gol, mna, mpd, na, so4

More info for Protein automated matches from b.29.1.14: vp4 sialic acid binding domain

Timeline for Protein automated matches from b.29.1.14: vp4 sialic acid binding domain:

Protein automated matches from b.29.1.14: vp4 sialic acid binding domain first appeared in SCOPe 2.01
Protein automated matches from b.29.1.14: vp4 sialic acid binding domain appears in SCOPe 2.05
Protein automated matches from b.29.1.14: vp4 sialic acid binding domain appears in SCOPe 2.07
Protein automated matches from b.29.1.14: vp4 sialic acid binding domain appears in the current release, SCOPe 2.08