Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2344607Class b: All beta proteins [48724] (178 folds)
  3. 2395396Fold b.60: Lipocalins [50813] (1 superfamily)
    barrel, closed or opened; n=8, S=12; meander
  4. 2395397Superfamily b.60.1: Lipocalins [50814] (10 families) (S)
    bind hydrophobic ligands in their interior
  5. 2396500Family b.60.1.0: automated matches [191454] (1 protein)
    not a true family
  6. 2396501Protein automated matches [190698] (21 species)
    not a true protein

Species:

  1. 2396502Ailuropoda melanoleuca [TaxId:9646] [340938] (1 PDB entry)
  2. 2396504Blood fluke (Schistosoma mansoni) [TaxId:6183] [255547] (1 PDB entry)
  3. 2396506Canis lupus [TaxId:9615] [257248] (2 PDB entries)
    1. Domains for 4odd:
      1. 2396507Domain d4odda_: 4odd A: [257249]
        automated match to d1gt1a_
      2. 2396508Domain d4oddb_: 4odd B: [263277]
        automated match to d1gt1a_
      3. 2396509Domain d4oddc_: 4odd C: [263278]
        automated match to d1gt1a_
    2. Domains for 5x7y:
      1. 3048360Domain d5x7ya_: 5x7y A: [348422]
        automated match to d1df3a_
        complexed with peg
      2. 3048475Domain d5x7yb_: 5x7y B: [348537]
        automated match to d1df3a_
        complexed with peg
      3. 3048724Domain d5x7yc_: 5x7y C: [348786]
        automated match to d1df3a_
        complexed with peg
      4. 3049056Domain d5x7yd_: 5x7y D: [349118]
        automated match to d1df3a_
        complexed with peg
  4. 2396510Chicken (Gallus gallus) [TaxId:9031] [255015] (2 PDB entries)
    1. Domain for 1zry:
    2. Domain for 2lba:
  5. 2396513Dog (Canis familiaris) [TaxId:9615] [225896] (1 PDB entry)
  6. 2396515Enterobacter sp. [TaxId:418698] [226077] (2 PDB entries)
    1. Domains for 3nx1:
      1. 2396518Domain d3nx1a_: 3nx1 A: [214070]
        automated match to d2gc9b_
      2. 2396519Domain d3nx1b_: 3nx1 B: [214071]
        automated match to d2gc9b_
    2. Domains for 3nx2:
      1. 2396516Domain d3nx2a_: 3nx2 A: [214072]
        automated match to d2gc9b_
        complexed with fer
      2. 2396517Domain d3nx2b_: 3nx2 B: [214073]
        automated match to d2gc9b_
        complexed with fer
  7. 2396520Enterobacter sp. [TaxId:42895] [273737] (2 PDB entries)
    1. Domains for 4uu2:
      1. 2396523Domain d4uu2a_: 4uu2 A: [273739]
        automated match to d3nx1b_
        complexed with gly, po4, so4; mutant
      2. 2396524Domain d4uu2b_: 4uu2 B: [273741]
        automated match to d3nx1b_
        complexed with gly, po4, so4; mutant
    2. Domains for 4uu3:
      1. 2396521Domain d4uu3a_: 4uu3 A: [273740]
        automated match to d3nx1b_
      2. 2396522Domain d4uu3b_: 4uu3 B: [273738]
        automated match to d3nx1b_
  8. 2396525Escherichia coli K-12 [TaxId:83333] [226033] (1 PDB entry)
  9. 2396527Fruit fly (Drosophila melanogaster) [TaxId:7227] [335584] (2 PDB entries)
    1. Domain for 5gge:
    2. Domain for 5gkb:
  10. 2396530Human (Homo sapiens) [TaxId:9606] [187833] (33 PDB entries)
    1. Domain for 2hzq:
    2. Domain for 2hzr:
    3. Domains for 2wwp:
      1. 2396572Domain d2wwpa_: 2wwp A: [207056]
        automated match to d4imna_
        complexed with cl, scn
      2. 2396573Domain d2wwpb_: 2wwp B: [207057]
        automated match to d4imna_
        complexed with cl, scn
    4. Domain for 2xst:
    5. Domains for 3ia8:
      1. 2396569Domain d3ia8a_: 3ia8 A: [178204]
        automated match to d2a13a1
        complexed with hem
      2. 2396570Domain d3ia8b_: 3ia8 B: [178205]
        automated match to d2a13a1
        complexed with hem
    6. Domain for 3nr3:
    7. Domain for 3o19:
    8. Domain for 3o22:
    9. Domains for 3o2y:
      1. 2396541Domain d3o2ya_: 3o2y A: [214132]
        automated match to d2a2ua_
        complexed with gol, ola, plm
      2. 2396542Domain d3o2yb_: 3o2y B: [214133]
        automated match to d2a2ua_
        complexed with gol, ola, plm
    10. Domain for 3qkg:
    11. Domain for 4a60:
    12. Domain for 4es7:
    13. Domain for 4imn:
    14. Domain for 4imo:
    15. Domain for 4orr:
    16. Domains for 4ors:
      1. 2396538Domain d4orsa_: 4ors A: [258703]
        automated match to d2k23a_
        complexed with so4; mutant
      2. 2396539Domain d4orsb_: 4ors B: [258707]
        automated match to d2k23a_
        complexed with so4; mutant
    17. Domains for 4oru:
      1. 2396545Domain d4orua_: 4oru A: [258705]
        automated match to d2k23a_
        complexed with peu; mutant
      2. 2396546Domain d4orub_: 4oru B: [258706]
        automated match to d2k23a_
        complexed with peu; mutant
    18. Domains for 4orw:
      1. 2396551Domain d4orwa_: 4orw A: [258701]
        automated match to d2k23a_
        mutant
      2. 2396552Domain d4orwb_: 4orw B: [258702]
        automated match to d2k23a_
        mutant
    19. Domains for 4orx:
      1. 2396547Domain d4orxa_: 4orx A: [258964]
        automated match to d2k23a_
        complexed with peu, so4; mutant
      2. 2396548Domain d4orxb_: 4orx B: [260213]
        automated match to d2k23a_
        complexed with peu, so4; mutant
    20. Domains for 4ory:
      1. 2396561Domain d4orya_: 4ory A: [263337]
        automated match to d2k23a_
        complexed with peu; mutant
      2. 2396562Domain d4oryb_: 4ory B: [261858]
        automated match to d2k23a_
        complexed with peu; mutant
      3. 2396563Domain d4oryc_: 4ory C: [261856]
        automated match to d2k23a_
        complexed with peu; mutant
      4. 2396564Domain d4oryd_: 4ory D: [263338]
        automated match to d2k23a_
        complexed with peu; mutant
      5. 2396565Domain d4orye_: 4ory E: [263339]
        automated match to d2k23a_
        complexed with peu; mutant
      6. 2396566Domain d4oryf_: 4ory F: [261857]
        automated match to d2k23a_
        complexed with peu; mutant
      7. 2396567Domain d4oryg_: 4ory G: [263340]
        automated match to d2k23a_
        complexed with peu; mutant
      8. 2396568Domain d4oryh_: 4ory H: [263341]
        automated match to d2k23a_
        complexed with peu; mutant
    21. Domains for 4os0:
      1. 2396557Domain d4os0a_: 4os0 A: [258708]
        automated match to d2k23a_
        mutant
      2. 2396558Domain d4os0b_: 4os0 B: [258709]
        automated match to d2k23a_
        mutant
    22. Domains for 4os3:
      1. 2396536Domain d4os3a_: 4os3 A: [258712]
        automated match to d2k23a_
        mutant
      2. 2396537Domain d4os3b_: 4os3 B: [258711]
        automated match to d2k23a_
        mutant
    23. Domains for 4os8:
      1. 2396553Domain d4os8a_: 4os8 A: [258710]
        automated match to d2k23a_
        mutant
      2. 2396554Domain d4os8b_: 4os8 B: [258713]
        automated match to d2k23a_
        mutant
    24. Domain for 4r0b:
    25. Domains for 4run:
      1. 2396576Domain d4runa1: 4run A:8-152 [271232]
        Other proteins in same PDB: d4runa2, d4runb2
        automated match to d2czta_
        complexed with flc
      2. 2396577Domain d4runb1: 4run B:2-152 [271233]
        Other proteins in same PDB: d4runa2, d4runb2
        automated match to d2czta_
        complexed with flc
    26. Domain for 5n4m:
    27. Domain for 5n4p:
    28. Domain for 5n4q:
    29. Domain for 5t43:
    30. Domain for 5wy9:
    31. Domain for 6ew2:
    32. Domain for 6ew4:
    33. Domains for 6ew5:
      1. 3054449Domain d6ew5d1: 6ew5 D:0-131 [354511]
        Other proteins in same PDB: d6ew5a2, d6ew5b2, d6ew5c2, d6ew5d2
        automated match to d1vyfa_
        complexed with plm; mutant
      2. 3054493Domain d6ew5a1: 6ew5 A:0-131 [354555]
        Other proteins in same PDB: d6ew5a2, d6ew5b2, d6ew5c2, d6ew5d2
        automated match to d1vyfa_
        complexed with plm; mutant
      3. 3054520Domain d6ew5c1: 6ew5 C:0-131 [354582]
        Other proteins in same PDB: d6ew5a2, d6ew5b2, d6ew5c2, d6ew5d2
        automated match to d1vyfa_
        complexed with plm; mutant
      4. 3054552Domain d6ew5b1: 6ew5 B:0-131 [354614]
        Other proteins in same PDB: d6ew5a2, d6ew5b2, d6ew5c2, d6ew5d2
        automated match to d1vyfa_
        complexed with plm; mutant
  11. 2396579Longfin inshore squid (Loligo pealei) [TaxId:6621] [189844] (2 PDB entries)
    1. Domains for 3pp6:
      1. 2396581Domain d3pp6a_: 3pp6 A: [183919]
        automated match to d1yiva1
        complexed with pam; mutant
      2. 2396582Domain d3pp6b_: 3pp6 B: [183920]
        automated match to d1yiva1
        complexed with pam; mutant
      3. 2396583Domain d3pp6c_: 3pp6 C: [183921]
        automated match to d1yiva1
        complexed with pam; mutant
    2. Domain for 3ppt:
  12. 2396584Luciola cerata [TaxId:1071519] [311509] (1 PDB entry)
  13. 2396586Migratory locust (Locusta migratoria) [TaxId:7004] [255172] (1 PDB entry)
  14. 2396588Mouse (Mus musculus) [TaxId:10090] [225136] (5 PDB entries)
    1. Domain for 2czt:
    2. Domains for 2czu:
      1. 2396590Domain d2czua_: 2czu A: [203858]
        automated match to d1gm6a_
      2. 2396591Domain d2czub_: 2czu B: [203859]
        automated match to d1gm6a_
    3. Domain for 2e4j:
    4. Domain for 2ktd:
    5. Domain for 2rq0:
  15. 2396595Norway rat (Rattus norvegicus) [TaxId:10116] [188898] (2 PDB entries)
    1. Domain for 2l5p:
    2. Domains for 3fiq:
      1. 2396596Domain d3fiqa_: 3fiq A: [175834]
        automated match to d1e5pb_
        complexed with edo
      2. 2396597Domain d3fiqb_: 3fiq B: [175835]
        automated match to d1e5pb_
        complexed with edo
  16. 2396599Pygoscelis papua [TaxId:30457] [275571] (1 PDB entry)
  17. 2396601Ramazzottius varieornatus [TaxId:947166] [337124] (2 PDB entries)
    1. Domains for 5xn9:
      1. 2396602Domain d5xn9a1: 5xn9 A:31-167 [337147]
        Other proteins in same PDB: d5xn9a2, d5xn9b2
        automated match to d2poaa_
        complexed with acy, cl, edo, mg, zn
      2. 2396603Domain d5xn9b1: 5xn9 B:31-166 [337152]
        Other proteins in same PDB: d5xn9a2, d5xn9b2
        automated match to d2poaa_
        complexed with acy, cl, edo, mg, zn
    2. Domains for 5xna:
      1. 2396604Domain d5xnaa1: 5xna A:31-166 [337127]
        Other proteins in same PDB: d5xnaa2, d5xnab2
        automated match to d2poaa_
        complexed with acy, cl, edo, mg, shv, zn
      2. 2396605Domain d5xnab1: 5xna B:31-166 [337125]
        Other proteins in same PDB: d5xnaa2, d5xnab2
        automated match to d2poaa_
        complexed with acy, cl, edo, mg, shv, zn
  18. 2396606Rhodnius prolixus [TaxId:13249] [193297] (10 PDB entries)
    1. Domains for 4ge1:
      1. 2396614Domain d4ge1a_: 4ge1 A: [193298]
        automated match to d2eu7x_
        complexed with gol, tss
      2. 2396615Domain d4ge1b_: 4ge1 B: [202246]
        automated match to d4ge1a_
        complexed with gol, tss
      3. 2396616Domain d4ge1c_: 4ge1 C: [202247]
        automated match to d4ge1a_
        complexed with gol, tss
      4. 2396617Domain d4ge1d_: 4ge1 D: [202248]
        automated match to d4ge1a_
        complexed with gol, tss
    2. Domains for 4get:
      1. 2396618Domain d4geta_: 4get A: [221878]
        automated match to d4ge1a_
        complexed with trs
      2. 2396619Domain d4getb_: 4get B: [221879]
        automated match to d4ge1a_
        complexed with trs
      3. 2396620Domain d4getc_: 4get C: [221880]
        automated match to d4ge1a_
        complexed with trs
      4. 2396621Domain d4getd_: 4get D: [221881]
        automated match to d4ge1a_
        complexed with trs
    3. Domains for 4hfo:
      1. 2396622Domain d4hfoa_: 4hfo A: [252428]
        automated match to d4ge1a_
      2. 2396623Domain d4hfob_: 4hfo B: [252429]
        automated match to d4ge1a_
      3. 2396624Domain d4hfoc_: 4hfo C: [252430]
        automated match to d4ge1a_
      4. 2396625Domain d4hfod_: 4hfo D: [252431]
        automated match to d4ge1a_
      5. 2396626Domain d4hfoi_: 4hfo I: [252432]
        automated match to d4ge1a_
      6. 2396627Domain d4hfoj_: 4hfo J: [252433]
        automated match to d4ge1a_
      7. 2396628Domain d4hfok_: 4hfo K: [252434]
        automated match to d4ge1a_
      8. 2396629Domain d4hfol_: 4hfo L: [252435]
        automated match to d4ge1a_
    4. Domain for 4xmc:
    5. Domain for 4xmd:
    6. Domain for 4xme:
    7. Domain for 4xmf:
    8. Domain for 4xmg:
    9. Domain for 5m6j:
    10. Domain for 5m6k:
  19. 2396630Sander vitreus [TaxId:283036] [323251] (3 PDB entries)
    1. Domains for 5ez2:
      1. 2396631Domain d5ez2a_: 5ez2 A: [323335]
        automated match to d1h91a_
        complexed with bla, edo
      2. 2396632Domain d5ez2b_: 5ez2 B: [323284]
        automated match to d1h91a_
        complexed with bla, edo
    2. Domains for 5f1e:
      1. 2396637Domain d5f1ea_: 5f1e A: [323324]
        automated match to d1h91a_
      2. 2396638Domain d5f1eb_: 5f1e B: [323295]
        automated match to d1h91a_
    3. Domains for 5f6z:
      1. 2396633Domain d5f6za_: 5f6z A: [323357]
        automated match to d1h91a_
        complexed with bla, nag
      2. 2396634Domain d5f6zb_: 5f6z B: [323291]
        automated match to d1h91a_
        complexed with bla, nag
      3. 2396635Domain d5f6zc_: 5f6z C: [323252]
        automated match to d1h91a_
        complexed with bla, nag
      4. 2396636Domain d5f6zd_: 5f6z D: [323363]
        automated match to d1h91a_
        complexed with bla, nag
  20. 2396639Trichosurus vulpecula [TaxId:9337] [225383] (3 PDB entries)
    1. Domains for 2r73:
      1. 2396646Domain d2r73a_: 2r73 A: [205974]
        automated match to d1obpa_
      2. 2396647Domain d2r73b_: 2r73 B: [205975]
        automated match to d1obpa_
      3. 2396648Domain d2r73c_: 2r73 C: [205976]
        automated match to d1obpa_
      4. 2396649Domain d2r73d_: 2r73 D: [205977]
        automated match to d1obpa_
    2. Domains for 2r74:
      1. 2396644Domain d2r74a_: 2r74 A: [205978]
        automated match to d1obpa_
        complexed with cl, ipa, zn
      2. 2396645Domain d2r74b_: 2r74 B: [205979]
        automated match to d1obpa_
        complexed with cl, ipa, zn
    3. Domains for 2ra6:
      1. 2396640Domain d2ra6a_: 2ra6 A: [206038]
        automated match to d1obpa_
        complexed with cl, ety, ipa, zn
      2. 2396641Domain d2ra6b_: 2ra6 B: [206039]
        automated match to d1obpa_
        complexed with cl, ety, ipa, zn
      3. 2396642Domain d2ra6c_: 2ra6 C: [206040]
        automated match to d1obpa_
        complexed with cl, ety, ipa, zn
      4. 2396643Domain d2ra6d_: 2ra6 D: [206041]
        automated match to d1obpa_
        complexed with cl, ety, ipa, zn
  21. 2396650Zebrafish (Danio rerio) [TaxId:7955] [188731] (3 PDB entries)
    1. Domain for 3elx:
    2. Domains for 3elz:
      1. 2396652Domain d3elza1: 3elz A:1-130 [175066]
        Other proteins in same PDB: d3elza2, d3elzb2, d3elzb3, d3elzc2, d3elzc3
        automated match to d1o1ua_
        complexed with chd
      2. 2396653Domain d3elzb1: 3elz B:1-130 [175067]
        Other proteins in same PDB: d3elza2, d3elzb2, d3elzb3, d3elzc2, d3elzc3
        automated match to d1o1ua_
        complexed with chd
      3. 2396654Domain d3elzc1: 3elz C:1-130 [175068]
        Other proteins in same PDB: d3elza2, d3elzb2, d3elzb3, d3elzc2, d3elzc3
        automated match to d1o1ua_
        complexed with chd
    3. Domains for 3em0:
      1. 2396655Domain d3em0a1: 3em0 A:1-130 [175069]
        Other proteins in same PDB: d3em0a2, d3em0b2, d3em0b3
        automated match to d1o1ua_
        complexed with chd
      2. 2396656Domain d3em0b1: 3em0 B:1-130 [175070]
        Other proteins in same PDB: d3em0a2, d3em0b2, d3em0b3
        automated match to d1o1ua_
        complexed with chd

More info for Protein automated matches from b.60.1.0: automated matches

Timeline for Protein automated matches from b.60.1.0: automated matches: