SCOPe 2.08: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.08
Class a: All alpha proteins [46456] (290 folds)
Fold a.4: DNA/RNA-binding 3-helical bundle [46688] (14 superfamilies)
core: 3-helices; bundle, closed or partly opened, right-handed twist; up-and down
Superfamily a.4.1: Homeodomain-like [46689] (21 families)
consists only of helices
Family a.4.1.0: automated matches [191447] (1 protein)
not a true family
Protein automated matches [190674] (25 species)
not a true protein

Species:

Acinetobacter baumannii [TaxId:509173] [389356] (2 PDB entries)
1. Domains for 6rx9:
  1. Domain d6rx9a1: 6rx9 A:3-67 [416580]
    Other proteins in same PDB: d6rx9a2, d6rx9b2
    automated match to d6rxba1
    complexed with so4
  2. Domain d6rx9b1: 6rx9 B:3-67 [416582]
    Other proteins in same PDB: d6rx9a2, d6rx9b2
    automated match to d6rxba1
    complexed with so4
2. Domains for 6rxb:
  1. Domain d6rxba1: 6rxb A:3-67 [389357]
    Other proteins in same PDB: d6rxba2, d6rxbb2, d6rxbb3, d6rxbc2, d6rxbd2, d6rxbd3
    automated match to d2ns7a1
    complexed with cl, edo, mg, miy, sin
  2. Domain d6rxbb1: 6rxb B:3-67 [389364]
    Other proteins in same PDB: d6rxba2, d6rxbb2, d6rxbb3, d6rxbc2, d6rxbd2, d6rxbd3
    automated match to d2ns7a1
    complexed with cl, edo, mg, miy, sin
  3. Domain d6rxbc1: 6rxb C:3-67 [389370]
    Other proteins in same PDB: d6rxba2, d6rxbb2, d6rxbb3, d6rxbc2, d6rxbd2, d6rxbd3
    automated match to d2ns7a1
    complexed with cl, edo, mg, miy, sin
  4. Domain d6rxbd1: 6rxb D:4-67 [389409]
    Other proteins in same PDB: d6rxba2, d6rxbb2, d6rxbb3, d6rxbc2, d6rxbd2, d6rxbd3
    automated match to d2ns7a1
    complexed with cl, edo, mg, miy, sin
African clawed frog (Xenopus laevis) [TaxId:8355] [225308] (1 PDB entry)
- Domain for 2nog:
  - Domain d2nogb2: 2nog B:828-895 [205126]
    Other proteins in same PDB: d2noga1, d2nogb1
    automated match to d1ofcx1
    complexed with mg
Bacillus cereus [TaxId:1396] [231498] (1 PDB entry)
- Domains for 2wv1:
  1. Domain d2wv1a1: 2wv1 A:5-76 [231499]
    Other proteins in same PDB: d2wv1a2, d2wv1a3, d2wv1b2, d2wv1b3
    automated match to d2fx0a1
    complexed with no3; mutant
  2. Domain d2wv1b1: 2wv1 B:5-76 [231501]
    Other proteins in same PDB: d2wv1a2, d2wv1a3, d2wv1b2, d2wv1b3
    automated match to d2fx0a1
    complexed with no3; mutant
Bacillus halodurans [TaxId:272558] [330328] (2 PDB entries)
1. Domains for 5gp9:
  1. Domain d5gp9a1: 5gp9 A:3-78 [330383]
    Other proteins in same PDB: d5gp9a2, d5gp9b2
    automated match to d1vi0a1
    complexed with gol, mg, plm
  2. Domain d5gp9b1: 5gp9 B:8-78 [330356]
    Other proteins in same PDB: d5gp9a2, d5gp9b2
    automated match to d1vi0a1
    complexed with gol, mg, plm
2. Domains for 5gpa:
  1. Domain d5gpaa1: 5gpa A:3-78 [330329]
    Other proteins in same PDB: d5gpaa2, d5gpab2
    automated match to d1vi0a1
    complexed with gol, mg
  2. Domain d5gpab1: 5gpa B:8-78 [330333]
    Other proteins in same PDB: d5gpaa2, d5gpab2
    automated match to d1vi0a1
    complexed with gol, mg
Bacillus subtilis [TaxId:224308] [267907] (2 PDB entries)
1. Domains for 3whb:
  1. Domain d3whba1: 3whb A:5-77 [265647]
    Other proteins in same PDB: d3whba2, d3whbb2
    automated match to d1vi0a1
    complexed with dcc
  2. Domain d3whbb1: 3whb B:6-77 [265649]
    Other proteins in same PDB: d3whba2, d3whbb2
    automated match to d1vi0a1
    complexed with dcc
2. Domains for 3whc:
  1. Domain d3whca1: 3whc A:4-77 [265651]
    Other proteins in same PDB: d3whca2, d3whcb2, d3whcc2, d3whcd2, d3whce2, d3whcf2
    automated match to d1vi0a1
    complexed with st9
  2. Domain d3whcb1: 3whc B:6-77 [265653]
    Other proteins in same PDB: d3whca2, d3whcb2, d3whcc2, d3whcd2, d3whce2, d3whcf2
    automated match to d1vi0a1
    complexed with st9
  3. Domain d3whcc1: 3whc C:5-77 [265655]
    Other proteins in same PDB: d3whca2, d3whcb2, d3whcc2, d3whcd2, d3whce2, d3whcf2
    automated match to d1vi0a1
    complexed with st9
  4. Domain d3whcd1: 3whc D:6-77 [265657]
    Other proteins in same PDB: d3whca2, d3whcb2, d3whcc2, d3whcd2, d3whce2, d3whcf2
    automated match to d1vi0a1
    complexed with st9
  5. Domain d3whce1: 3whc E:4-77 [265659]
    Other proteins in same PDB: d3whca2, d3whcb2, d3whcc2, d3whcd2, d3whce2, d3whcf2
    automated match to d1vi0a1
    complexed with st9
  6. Domain d3whcf1: 3whc F:7-77 [265661]
    Other proteins in same PDB: d3whca2, d3whcb2, d3whcc2, d3whcd2, d3whce2, d3whcf2
    automated match to d1vi0a1
    complexed with st9
Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [233791] (2 PDB entries)
1. Domain for 3ukg:
  - Domain d3ukga1: 3ukg A:360-445 [233792]
    Other proteins in same PDB: d3ukga2
    automated match to d1igna1
    protein/DNA complex; complexed with ca
2. Domains for 6l9j:
  1. Domain d6l9jb_: 6l9j B: [395105]
    automated match to d5gjka_
    complexed with gol
  2. Domain d6l9jc_: 6l9j C: [395067]
    automated match to d5gjka_
    complexed with gol
  3. Domain d6l9je_: 6l9j E: [395108]
    automated match to d5gjka_
    complexed with gol
  4. Domain d6l9jf_: 6l9j F: [395087]
    automated match to d5gjka_
    complexed with gol
  5. Domain d6l9jh_: 6l9j H: [395089]
    automated match to d5gjka_
    complexed with gol
  6. Domain d6l9ji_: 6l9j I: [395096]
    automated match to d5gjka_
    complexed with gol
  7. Domain d6l9jk_: 6l9j K: [395097]
    automated match to d5gjka_
    complexed with gol
  8. Domain d6l9jl_: 6l9j L: [395140]
    automated match to d5gjka_
    complexed with gol
Chicken (Gallus gallus) [TaxId:9031] [256162] (1 PDB entry)
- Domain for 3zob:
  - Domain d3zoba1: 3zob A:6-65 [250810]
    Other proteins in same PDB: d3zoba2, d3zoba3
    automated match to d1qrya_
Escherichia coli [TaxId:562] [226228] (11 PDB entries)
1. Domain for 2vkv:
  - Domain d2vkva1: 2vkv A:6-67 [153230]
    Other proteins in same PDB: d2vkva2
    automated match to d1a6ia1
    complexed with mg, tdc
2. Domain for 2xrl:
  - Domain d2xrla1: 2xrl A:3-67 [207325]
    Other proteins in same PDB: d2xrla2, d2xrla3
    automated match to d1qpia1
    complexed with cl, dxt, mg
3. Domain for 4ac0:
  - Domain d4ac0a1: 4ac0 A:2-67 [218776]
    Other proteins in same PDB: d4ac0a2
    automated match to d1qpia1
    complexed with mg, miy, po4
4. Domain for 4b1r:
  - Domain d4b1ra1: 4b1r A:3-67 [219251]
    Other proteins in same PDB: d4b1ra2, d4b1ra3
    automated match to d1qpia1
    complexed with cl, itc; mutant
5. Domain for 4b3a:
  - Domain d4b3aa1: 4b3a A:3-67 [219259]
    Other proteins in same PDB: d4b3aa2, d4b3aa3
    automated match to d1qpia1
    complexed with cl, mg, tac; mutant
6. Domain for 4d7m:
  - Domain d4d7ma1: 4d7m A:3-67 [261503]
    Other proteins in same PDB: d4d7ma2, d4d7ma3
    automated match to d1a6ia1
    complexed with cl, mg, so4, tdc
7. Domain for 4d7n:
  - Domain d4d7na1: 4d7n A:3-67 [261502]
    Other proteins in same PDB: d4d7na2, d4d7na3
    automated match to d1a6ia1
    complexed with cl, k, tdc
8. Domains for 5fkk:
  1. Domain d5fkka1: 5fkk A:3-67 [316661]
    Other proteins in same PDB: d5fkka2, d5fkka3, d5fkkb2, d5fkkb3
    automated match to d1a6ia1
    complexed with cl, mg, pg4, pge, so4, tdc; mutant
  2. Domain d5fkkb1: 5fkk B:3-67 [316663]
    Other proteins in same PDB: d5fkka2, d5fkka3, d5fkkb2, d5fkkb3
    automated match to d1a6ia1
    complexed with cl, mg, pg4, pge, so4, tdc; mutant
9. Domain for 5fkl:
  - Domain d5fkla1: 5fkl A:3-67 [316655]
    Other proteins in same PDB: d5fkla2, d5fkla3
    automated match to d1a6ia1
    complexed with cl, mg, so4, tdc; mutant
10. Domain for 5fkm:
  - Domain d5fkma1: 5fkm A:3-67 [316658]
    Other proteins in same PDB: d5fkma2, d5fkma3
    automated match to d1a6ia1
    complexed with cl, mg, tdc; mutant
11. Domain for 5fko:
  - Domain d5fkoa1: 5fko A:3-67 [316716]
    Other proteins in same PDB: d5fkoa2, d5fkoa3
    automated match to d1a6ia1
    complexed with cl, mg, tdc; mutant
Escherichia coli [TaxId:83333] [316666] (1 PDB entry)
- Domains for 5fkn:
  1. Domain d5fkna1: 5fkn A:3-67 [316710]
    Other proteins in same PDB: d5fkna2, d5fkna3, d5fknb2, d5fknb3
    automated match to d1a6ia1
    complexed with cl, mg, tdc; mutant
  2. Domain d5fknb1: 5fkn B:3-67 [316667]
    Other proteins in same PDB: d5fkna2, d5fkna3, d5fknb2, d5fknb3
    automated match to d1a6ia1
    complexed with cl, mg, tdc; mutant
Fission yeast (Schizosaccharomyces pombe) [TaxId:4896] [255149] (1 PDB entry)
- Domain for 2elk:
  - Domain d2elka1: 2elk A:8-58 [241775]
    Other proteins in same PDB: d2elka2
    automated match to d1x41a1
Fruit fly (Drosophila melanogaster) [TaxId:7227] [271176] (2 PDB entries)
1. Domains for 2mg4:
  1. Domain d2mg4a1: 2mg4 A:1-58 [271177]
    Other proteins in same PDB: d2mg4a2, d2mg4b2
    automated match to d3zoba_
  2. Domain d2mg4b1: 2mg4 B:1-58 [271178]
    Other proteins in same PDB: d2mg4a2, d2mg4b2
    automated match to d3zoba_
2. Domain for 6fvc:
  - Domain d6fvca1: 6fvc A:4-62 [367083]
    Other proteins in same PDB: d6fvca2, d6fvca3
    automated match to d1ftta_
    mutant
Golden hamster (Mesocricetus auratus) [TaxId:10036] [187780] (1 PDB entry)
- Domains for 2h1k:
  1. Domain d2h1ka_: 2h1k A: [164912]
    automated match to d1ahdp_
    protein/DNA complex
  2. Domain d2h1kb_: 2h1k B: [164913]
    automated match to d1ahdp_
    protein/DNA complex
Human (Homo sapiens) [TaxId:9606] [189258] (28 PDB entries)
1. Domain for 1wqi:
  - Domain d1wqia1: 1wqi A:8-64 [303319]
    Other proteins in same PDB: d1wqia2, d1wqia3
    automated match to d1ftta_
2. Domain for 1yz8:
  - Domain d1yz8p2: 1yz8 P:1-60 [303424]
    Other proteins in same PDB: d1yz8p3, d1yz8p4
    automated match to d2l7fp_
    protein/DNA complex; mutant
3. Domain for 2da1:
  - Domain d2da1a1: 2da1 A:8-64 [241531]
    Other proteins in same PDB: d2da1a2, d2da1a3
    automated match to d2ecca1
4. Domain for 2da2:
  - Domain d2da2a1: 2da2 A:8-64 [264248]
    Other proteins in same PDB: d2da2a2, d2da2a3
    automated match to d2k40a_
5. Domain for 2da3:
  - Domain d2da3a1: 2da3 A:8-74 [241532]
    Other proteins in same PDB: d2da3a2, d2da3a3
    automated match to d1bw5a_
6. Domain for 2da5:
  - Domain d2da5a1: 2da5 A:8-69 [241533]
    Other proteins in same PDB: d2da5a2, d2da5a3
    automated match to d2ecca1
7. Domain for 2djn:
  - Domain d2djna1: 2djn A:8-64 [241578]
    Other proteins in same PDB: d2djna2, d2djna3
    automated match to d1qrya_
8. Domain for 2dmq:
  - Domain d2dmqa1: 2dmq A:8-74 [241612]
    Other proteins in same PDB: d2dmqa2, d2dmqa3
    automated match to d2ecca1
9. Domain for 2dmt:
  - Domain d2dmta1: 2dmt A:8-74 [241614]
    Other proteins in same PDB: d2dmta2, d2dmta3
    automated match to d1nk2p_
10. Domain for 2dmu:
  - Domain d2dmua1: 2dmu A:8-64 [241615]
    Other proteins in same PDB: d2dmua2, d2dmua3
    automated match to d1nk2p_
11. Domain for 2dn0:
  - Domain d2dn0a1: 2dn0 A:8-70 [241617]
    Other proteins in same PDB: d2dn0a2, d2dn0a3
    automated match to d2ecca1
12. Domain for 2k40:
  - Domain d2k40a_: 2k40 A: [242368]
    automated match to d2cuea1
    mutant
13. Domain for 2l7f:
  - Domain d2l7fp1: 2l7f P:1-60 [242795]
    Other proteins in same PDB: d2l7fp2, d2l7fp3
    automated match to d1bw5a_
14. Domain for 2l7m:
  - Domain d2l7mp1: 2l7m P:1-66 [242798]
    Other proteins in same PDB: d2l7mp2
    automated match to d1bw5a_
    mutant
15. Domain for 2l7z:
  - Domain d2l7za1: 2l7z A:7-73 [242801]
    Other proteins in same PDB: d2l7za2
    automated match to d1qrya_
16. Domain for 2ltp:
  - Domain d2ltpa_: 2ltp A: [242992]
    automated match to d2iw5b1
17. Domain for 2m0c:
  - Domain d2m0ca1: 2m0c A:4-75 [243059]
    Other proteins in same PDB: d2m0ca2
    automated match to d1ftta_
18. Domain for 2m34:
  - Domain d2m34a1: 2m34 A:2-71 [243086]
    Other proteins in same PDB: d2m34a2
    automated match to d1ftza_
19. Domain for 2me0:
  - Domain d2me0a1: 2me0 A:2-71 [243178]
    Other proteins in same PDB: d2me0a2
    automated match to d1ftza_
20. Domain for 2me6:
  - Domain d2me6a1: 2me6 A:2-71 [243179]
    Other proteins in same PDB: d2me6a2
    automated match to d1ftza_
    protein/DNA complex
21. Domain for 2n8g:
  - Domain d2n8ga1: 2n8g A:2-71 [278708]
    Other proteins in same PDB: d2n8ga2
    automated match to d2m34a_
22. Domain for 2yum:
  - Domain d2yuma1: 2yum A:8-69 [244828]
    Other proteins in same PDB: d2yuma2, d2yuma3
    automated match to d2cu7a1
23. Domain for 3a03:
  - Domain d3a03a_: 3a03 A: [171621]
    automated match to d2e1oa1
    complexed with na, so4
24. Domains for 4rdu:
  1. Domain d4rdua_: 4rdu A: [261144]
    automated match to d1ftta_
    protein/DNA complex
  2. Domain d4rdud_: 4rdu D: [261145]
    automated match to d1ftta_
    protein/DNA complex
25. Domain for 5gjk:
  - Domain d5gjka_: 5gjk A: [335197]
    automated match to d2fq3a1
    complexed with gol, po4
26. Domain for 5z2s:
  - Domain d5z2sa_: 5z2s A: [349047]
    automated match to d1fjla_
27. Domains for 6kag:
  1. Domain d6kagb_: 6kag B: [390479]
    automated match to d5gjka_
  2. Domain d6kagc_: 6kag C: [390480]
    automated match to d5gjka_
28. Domains for 6kz7:
  1. Domain d6kz7a_: 6kz7 A: [388897]
    Other proteins in same PDB: d6kz7c2
    automated match to d5gjka_
  2. Domain d6kz7c1: 6kz7 C:449-542 [388874]
    Other proteins in same PDB: d6kz7c2
    automated match to d5gjka_
Mannheimia haemolytica [TaxId:75985] [311624] (1 PDB entry)
- Domain for 4d5f:
  - Domain d4d5fa1: 4d5f A:4-67 [311625]
    Other proteins in same PDB: d4d5fa2
    automated match to d2vpra1
    complexed with cl, gol, so4
Mouse (Mus musculus) [TaxId:10090] [188321] (5 PDB entries)
1. Domain for 2d9a:
  - Domain d2d9aa1: 2d9a A:8-54 [241520]
    Other proteins in same PDB: d2d9aa2, d2d9aa3
    automated match to d1mbea_
2. Domain for 2dms:
  - Domain d2dmsa1: 2dms A:8-74 [241613]
    Other proteins in same PDB: d2dmsa2, d2dmsa3
    automated match to d3lnqa_
3. Domain for 2ld5:
  - Domain d2ld5a_: 2ld5 A: [242847]
    automated match to d1nk2p_
    protein/DNA complex
4. Domains for 2vi6:
  1. Domain d2vi6a_: 2vi6 A: [168625]
    automated match to d1ftta_
  2. Domain d2vi6b_: 2vi6 B: [168626]
    automated match to d1ftta_
  3. Domain d2vi6c_: 2vi6 C: [168627]
    automated match to d1ftta_
  4. Domain d2vi6d_: 2vi6 D: [168628]
    automated match to d1ftta_
  5. Domain d2vi6e_: 2vi6 E: [168629]
    automated match to d1ftta_
  6. Domain d2vi6f_: 2vi6 F: [168630]
    automated match to d1ftta_
  7. Domain d2vi6g_: 2vi6 G: [168631]
    automated match to d1ftta_
  8. Domain d2vi6h_: 2vi6 H: [168632]
    automated match to d1ftta_
5. Domain for 2xsd:
  - Domain d2xsdc2: 2xsd C:343-397 [207328]
    Other proteins in same PDB: d2xsdc1
    automated match to d1octc1
    protein/DNA complex; complexed with edo
Mycobacterium tuberculosis [TaxId:1773] [232223] (13 PDB entries)
1. Domain for 3g1l:
  - Domain d3g1la1: 3g1l A:22-94 [232224]
    Other proteins in same PDB: d3g1la2
    automated match to d1t56a1
    protein/DNA complex; complexed with rf2
2. Domain for 3g1m:
  - Domain d3g1ma1: 3g1m A:22-94 [232225]
    Other proteins in same PDB: d3g1ma2
    automated match to d1t56a1
    protein/DNA complex; complexed with rf3
3. Domain for 3g1o:
  - Domain d3g1oa1: 3g1o A:22-94 [232230]
    Other proteins in same PDB: d3g1oa2
    automated match to d1t56a1
    protein/DNA complex; complexed with rf1
4. Domain for 3o8g:
  - Domain d3o8ga1: 3o8g A:22-94 [248125]
    Other proteins in same PDB: d3o8ga2
    automated match to d3g1ma1
    protein/DNA complex; complexed with o8g
5. Domain for 3o8h:
  - Domain d3o8ha1: 3o8h A:22-94 [248127]
    Other proteins in same PDB: d3o8ha2
    automated match to d3g1ma1
    protein/DNA complex; complexed with o8h
6. Domain for 3q0u:
  - Domain d3q0ua1: 3q0u A:22-94 [248735]
    Other proteins in same PDB: d3q0ua2
    automated match to d3g1ma1
    complexed with ll3
7. Domains for 3q0v:
  1. Domain d3q0va1: 3q0v A:22-92 [248737]
    Other proteins in same PDB: d3q0va2, d3q0vb2
    automated match to d3sfia1
    complexed with ll4
  2. Domain d3q0vb1: 3q0v B:22-94 [248739]
    Other proteins in same PDB: d3q0va2, d3q0vb2
    automated match to d3g1ma1
    complexed with ll4
8. Domain for 3q0w:
  - Domain d3q0wa1: 3q0w A:22-94 [248741]
    Other proteins in same PDB: d3q0wa2
    automated match to d3sfia1
    complexed with gol, ll5
9. Domain for 3q3s:
  - Domain d3q3sa1: 3q3s A:22-94 [248744]
    Other proteins in same PDB: d3q3sa2
    automated match to d3g1ma1
    protein/DNA complex; complexed with o8b
10. Domain for 3sdg:
  - Domain d3sdga1: 3sdg A:26-92 [249369]
    Other proteins in same PDB: d3sdga2
    automated match to d3sfia1
    protein/DNA complex; complexed with 3se
11. Domain for 3sfi:
  - Domain d3sfia1: 3sfi A:22-94 [238507]
    Other proteins in same PDB: d3sfia2
    automated match to d3g1ma1
    protein/DNA complex; complexed with 3sf
12. Domain for 4dw6:
  - Domain d4dw6a1: 4dw6 A:24-93 [251626]
    Other proteins in same PDB: d4dw6a2
    automated match to d3sfia1
    protein/DNA complex; complexed with 0mn, gol, nh4
13. Domain for 5eyr:
  - Domain d5eyra1: 5eyr A:22-94 [314297]
    Other proteins in same PDB: d5eyra2
    automated match to d1t56a1
    complexed with 5t0
Mycobacterium tuberculosis [TaxId:83331] [313822] (25 PDB entries)
1. Domain for 5ezg:
  - Domain d5ezga1: 5ezg A:22-94 [313834]
    Other proteins in same PDB: d5ezga2
    automated match to d1t56a1
    complexed with 5t4, so4
2. Domain for 5ezh:
  - Domain d5ezha1: 5ezh A:22-94 [313837]
    Other proteins in same PDB: d5ezha2
    automated match to d1t56a1
    complexed with 841, so4
3. Domain for 5f04:
  - Domain d5f04a1: 5f04 A:24-94 [314038]
    Other proteins in same PDB: d5f04a2
    automated match to d1t56a1
    complexed with 5tb, edo, gol, so4
4. Domain for 5f08:
  - Domain d5f08a1: 5f08 A:22-94 [314047]
    Other proteins in same PDB: d5f08a2
    automated match to d1t56a1
    complexed with 5tg
5. Domain for 5f0c:
  - Domain d5f0ca1: 5f0c A:22-94 [313913]
    Other proteins in same PDB: d5f0ca2
    automated match to d1t56a1
    complexed with 5te, so4
6. Domain for 5f0f:
  - Domain d5f0fa1: 5f0f A:22-94 [313823]
    Other proteins in same PDB: d5f0fa2
    automated match to d1t56a1
    complexed with 5td, so4
7. Domain for 5f0h:
  - Domain d5f0ha1: 5f0h A:22-94 [313847]
    Other proteins in same PDB: d5f0ha2
    automated match to d1t56a1
    complexed with 5tc
8. Domain for 5f1j:
  - Domain d5f1ja1: 5f1j A:22-94 [313903]
    Other proteins in same PDB: d5f1ja2
    automated match to d1t56a1
    complexed with 5to
9. Domain for 5f27:
  - Domain d5f27a1: 5f27 A:24-93 [313887]
    Other proteins in same PDB: d5f27a2
    automated match to d1t56a1
    complexed with 5tt
10. Domain for 6hnx:
  - Domain d6hnxa1: 6hnx A:24-94 [361786]
    Other proteins in same PDB: d6hnxa2
    automated match to d5nima1
    protein/DNA complex; complexed with gfz
11. Domain for 6hnz:
  - Domain d6hnza1: 6hnz A:24-92 [361684]
    Other proteins in same PDB: d6hnza2
    automated match to d5nima1
    protein/DNA complex; complexed with gh5
12. Domain for 6ho1:
  - Domain d6ho1a1: 6ho1 A:25-93 [361671]
    Other proteins in same PDB: d6ho1a2
    automated match to d5nima1
    protein/DNA complex; complexed with gfw, gol
13. Domain for 6ho2:
  - Domain d6ho2a1: 6ho2 A:25-93 [361724]
    Other proteins in same PDB: d6ho2a2
    automated match to d5nima1
    protein/DNA complex; complexed with ghn
14. Domain for 6ho3:
  - Domain d6ho3a1: 6ho3 A:24-94 [361731]
    Other proteins in same PDB: d6ho3a2
    automated match to d5nima1
    protein/DNA complex; complexed with gj2
15. Domain for 6ho5:
  - Domain d6ho5a1: 6ho5 A:25-94 [361713]
    Other proteins in same PDB: d6ho5a2
    automated match to d5nima1
    protein/DNA complex; complexed with gh8
16. Domain for 6ho6:
  - Domain d6ho6a1: 6ho6 A:24-93 [361680]
    Other proteins in same PDB: d6ho6a2
    automated match to d5nima1
    protein/DNA complex; complexed with ggk
17. Domain for 6ho7:
  - Domain d6ho7a1: 6ho7 A:24-94 [361773]
    Other proteins in same PDB: d6ho7a2
    automated match to d5nima1
    protein/DNA complex; complexed with ghq
18. Domain for 6ho8:
  - Domain d6ho8a1: 6ho8 A:24-93 [361702]
    Other proteins in same PDB: d6ho8a2
    automated match to d5nima1
    protein/DNA complex; complexed with gg8
19. Domain for 6ho9:
  - Domain d6ho9a1: 6ho9 A:25-93 [361792]
    Other proteins in same PDB: d6ho9a2
    automated match to d5nima1
    protein/DNA complex; complexed with ghb
20. Domain for 6hoa:
  - Domain d6hoaa1: 6hoa A:24-94 [361700]
    Other proteins in same PDB: d6hoaa2
    automated match to d5nima1
    protein/DNA complex; complexed with ggn, gol
21. Domain for 6hob:
  - Domain d6hoba1: 6hob A:24-94 [361675]
    Other proteins in same PDB: d6hoba2
    automated match to d5nima1
    protein/DNA complex; complexed with gj5
22. Domain for 6hoc:
  - Domain d6hoca1: 6hoc A:25-93 [361690]
    Other proteins in same PDB: d6hoca2
    automated match to d5nima1
    protein/DNA complex; complexed with gje
23. Domain for 6hod:
  - Domain d6hoda1: 6hod A:24-94 [361734]
    Other proteins in same PDB: d6hoda2
    automated match to d5nima1
    protein/DNA complex; complexed with ghk
24. Domain for 6hoe:
  - Domain d6hoea1: 6hoe A:24-93 [361802]
    Other proteins in same PDB: d6hoea2
    automated match to d5nima1
    protein/DNA complex; complexed with gh2
25. Domain for 6hof:
  - Domain d6hofa1: 6hof A:24-94 [361688]
    Other proteins in same PDB: d6hofa2
    automated match to d5nima1
    protein/DNA complex; complexed with gj8
Nematode (Caenorhabditis elegans) [TaxId:6239] [260682] (1 PDB entry)
- Domain for 2mgq:
  - Domain d2mgqa1: 2mgq A:2-68 [260683]
    Other proteins in same PDB: d2mgqa2
    automated match to d2m0ca_
Norway rat (Rattus norvegicus) [TaxId:10116] [230637] (1 PDB entry)
- Domains for 2d5v:
  1. Domain d2d5va2: 2d5v A:100-155 [230638]
    Other proteins in same PDB: d2d5va1, d2d5vb1
    automated match to d1s7ea1
    protein/DNA complex; complexed with act, gol
  2. Domain d2d5vb2: 2d5v B:100-155 [230640]
    Other proteins in same PDB: d2d5va1, d2d5vb1
    automated match to d1s7ea1
    protein/DNA complex; complexed with act, gol
Pasteurella multocida [TaxId:747] [225420] (1 PDB entry)
- Domain for 2vpr:
  - Domain d2vpra1: 2vpr A:2-67 [206411]
    Other proteins in same PDB: d2vpra2
    automated match to d1qpia1
    protein/DNA complex; complexed with mg, so4, tdc
Proteus mirabilis [TaxId:584] [311527] (1 PDB entry)
- Domain for 4d5c:
  - Domain d4d5ca1: 4d5c A:2-67 [311528]
    Other proteins in same PDB: d4d5ca2
    automated match to d2vpra1
    complexed with so4
Pseudomonas aeruginosa [TaxId:208964] [385403] (1 PDB entry)
- Domains for 6m10:
  1. Domain d6m10a_: 6m10 A: [385491]
    automated match to d3fisa_
  2. Domain d6m10b_: 6m10 B: [385439]
    automated match to d3fisa_
  3. Domain d6m10c_: 6m10 C: [385476]
    automated match to d3fisa_
  4. Domain d6m10d_: 6m10 D: [385404]
    automated match to d3fisa_
Streptomyces coelicolor [311233] (1 PDB entry)
- Domains for 2ofl:
  1. Domain d2ofla1: 2ofl A:15-89 [304279]
    Other proteins in same PDB: d2ofla2, d2oflb2
    automated match to d3c07a1
    complexed with pg4
  2. Domain d2oflb1: 2ofl B:16-89 [304281]
    Other proteins in same PDB: d2ofla2, d2oflb2
    automated match to d3c07a1
    complexed with pg4
Thale cress (Arabidopsis thaliana) [TaxId:3702] [368129] (1 PDB entry)
- Domains for 6j4k:
  1. Domain d6j4ka_: 6j4k A: [368130]
    automated match to d1irza_
    complexed with gol, mla
  2. Domain d6j4kb_: 6j4k B: [368164]
    automated match to d1irza_
    complexed with gol, mla
Trichomonas vaginalis [TaxId:5722] [233124] (4 PDB entries)
1. Domains for 2k9n:
  1. Domain d2k9na1: 2k9n A:1-49 [242429]
    automated match to d3osgd1
  2. Domain d2k9na2: 2k9n A:50-107 [242430]
    automated match to d3osga2
2. Domains for 2kdz:
  1. Domain d2kdza1: 2kdz A:1-49 [242473]
    automated match to d3osgd1
    protein/DNA complex
  2. Domain d2kdza2: 2kdz A:50-107 [242474]
    automated match to d3osga2
    protein/DNA complex
3. Domains for 3osf:
  1. Domain d3osfa1: 3osf A:48-96 [233125]
    automated match to d1h88c1
    protein/DNA complex; complexed with ipa
  2. Domain d3osfa2: 3osf A:97-150 [233126]
    automated match to d1gv2a2
    protein/DNA complex; complexed with ipa
  3. Domain d3osfd1: 3osf D:48-96 [233127]
    automated match to d1h88c1
    protein/DNA complex; complexed with ipa
  4. Domain d3osfd2: 3osf D:97-150 [233128]
    automated match to d1gv2a2
    protein/DNA complex; complexed with ipa
4. Domains for 3osg:
  1. Domain d3osga1: 3osg A:40-96 [233129]
    automated match to d1h88c1
    protein/DNA complex
  2. Domain d3osga2: 3osg A:97-150 [233130]
    automated match to d1gv2a2
    protein/DNA complex
  3. Domain d3osgd1: 3osg D:48-96 [233131]
    automated match to d1h88c1
    protein/DNA complex
  4. Domain d3osgd2: 3osg D:97-150 [233132]
    automated match to d1gv2a2
    protein/DNA complex

More info for Protein automated matches from a.4.1.0: automated matches

Timeline for Protein automated matches from a.4.1.0: automated matches:

Protein automated matches from a.4.1.0: automated matches first appeared in SCOPe 2.01
Protein automated matches from a.4.1.0: automated matches appears in SCOPe 2.07