Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2099098Fold c.14: ClpP/crotonase [52095] (1 superfamily)
    core: 4 turns of (beta-beta-alpha)n superhelix
  4. 2099099Superfamily c.14.1: ClpP/crotonase [52096] (5 families) (S)
  5. 2099550Family c.14.1.3: Crotonase-like [52103] (14 protein domains)
  6. 2099728Protein automated matches [190669] (6 species)
    not a true protein

Species:

  1. 2099729Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [279382] (3 PDB entries)
    1. Domains for 4zdc:
      1. 2099735Domain d4zdca_: 4zdc A: [279384]
        automated match to d1k39b_
        complexed with co8, gol, so4
      2. 2099736Domain d4zdcb_: 4zdc B: [279383]
        automated match to d1k39b_
        complexed with co8, gol, so4
      3. 2099737Domain d4zdcc_: 4zdc C: [279385]
        automated match to d1k39b_
        complexed with co8, gol, so4
    2. Domains for 4zde:
      1. 2099732Domain d4zdea_: 4zde A: [279388]
        automated match to d1k39b_
        complexed with gol, so4; mutant
      2. 2099733Domain d4zdeb_: 4zde B: [279386]
        automated match to d1k39b_
        complexed with gol, so4; mutant
      3. 2099734Domain d4zdec_: 4zde C: [279387]
        automated match to d1k39b_
        complexed with gol, so4; mutant
    3. Domains for 4zdf:
      1. 2099730Domain d4zdfa_: 4zdf A: [279395]
        automated match to d1k39b_
        complexed with gol; mutant
      2. 2099731Domain d4zdfb_: 4zdf B: [279394]
        automated match to d1k39b_
        complexed with gol; mutant
  2. 2099738Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [279389] (2 PDB entries)
    1. Domains for 4zdb:
      1. 2099739Domain d4zdba_: 4zdb A: [279391]
        automated match to d1k39b_
        complexed with caa, gol, so4
      2. 2099740Domain d4zdbb_: 4zdb B: [279392]
        automated match to d1k39b_
        complexed with caa, gol, so4
      3. 2099741Domain d4zdbc_: 4zdb C: [279390]
        automated match to d1k39b_
        complexed with caa, gol, so4
    2. Domain for 4zdd:
  3. 2099743Human (Homo sapiens) [TaxId:9606] [187771] (5 PDB entries)
    1. Domains for 2gtr:
      1. 2099744Domain d2gtra_: 2gtr A: [164842]
        automated match to d2fw2a1
      2. 2099745Domain d2gtrb_: 2gtr B: [164843]
        automated match to d2fw2a1
      3. 2099746Domain d2gtrc_: 2gtr C: [164844]
        automated match to d2fw2a1
    2. Domains for 2hw5:
      1. 2099750Domain d2hw5a_: 2hw5 A: [204636]
        automated match to d2duba_
        complexed with coo, mg
      2. 2099751Domain d2hw5b_: 2hw5 B: [204637]
        automated match to d2duba_
        complexed with coo, mg
      3. 2099752Domain d2hw5c_: 2hw5 C: [204638]
        automated match to d2duba_
        complexed with coo, mg
      4. 2099753Domain d2hw5d_: 2hw5 D: [204639]
        automated match to d2duba_
        complexed with coo, mg
      5. 2099754Domain d2hw5e_: 2hw5 E: [204640]
        automated match to d2duba_
        complexed with coo, mg
      6. 2099755Domain d2hw5f_: 2hw5 F: [204641]
        automated match to d2duba_
        complexed with coo, mg
    3. Domains for 4u18:
      1. 2099756Domain d4u18a1: 4u18 A:103-350 [268906]
        Other proteins in same PDB: d4u18a2
        automated match to d2f6qb_
        complexed with cl, gol
      2. 2099757Domain d4u18b_: 4u18 B: [268907]
        Other proteins in same PDB: d4u18a2
        automated match to d2f6qb_
        complexed with cl, gol
      3. 2099758Domain d4u18c_: 4u18 C: [268889]
        Other proteins in same PDB: d4u18a2
        automated match to d2f6qb_
        complexed with cl, gol
    4. Domains for 4u19:
      1. 2099747Domain d4u19a1: 4u19 A:103-349 [268892]
        Other proteins in same PDB: d4u19a2, d4u19b2
        automated match to d2f6qb_
        complexed with cl, edo; mutant
      2. 2099748Domain d4u19b1: 4u19 B:103-355 [268884]
        Other proteins in same PDB: d4u19a2, d4u19b2
        automated match to d2f6qb_
        complexed with cl, edo; mutant
      3. 2099749Domain d4u19c_: 4u19 C: [268893]
        Other proteins in same PDB: d4u19a2, d4u19b2
        automated match to d2f6qb_
        complexed with cl, edo; mutant
    5. Domains for 4u1a:
      1. 2099759Domain d4u1aa_: 4u1a A: [268891]
        Other proteins in same PDB: d4u1ab2, d4u1ac2
        automated match to d2f6qc_
        complexed with cl; mutant
      2. 2099760Domain d4u1ab1: 4u1a B:103-345 [268883]
        Other proteins in same PDB: d4u1ab2, d4u1ac2
        automated match to d2f6qc_
        complexed with cl; mutant
      3. 2099761Domain d4u1ac1: 4u1a C:103-346 [268888]
        Other proteins in same PDB: d4u1ab2, d4u1ac2
        automated match to d2f6qc_
        complexed with cl; mutant
  4. 2099762Mycobacterium tuberculosis [TaxId:1773] [256094] (1 PDB entry)
  5. 2099766Mycobacterium tuberculosis [TaxId:83332] [261127] (2 PDB entries)
    1. Domains for 4qii:
      1. 2099767Domain d4qiia_: 4qii A: [267316]
        automated match to d1rjnb_
        complexed with 2ne, pge
      2. 2099768Domain d4qiib_: 4qii B: [267317]
        automated match to d1rjnb_
        complexed with 2ne, pge
      3. 2099769Domain d4qiic_: 4qii C: [267318]
        automated match to d1rjnb_
        complexed with 2ne, pge
      4. 2099770Domain d4qiid_: 4qii D: [267319]
        automated match to d1rjnb_
        complexed with 2ne, pge
      5. 2099771Domain d4qiie_: 4qii E: [267320]
        automated match to d1rjnb_
        complexed with 2ne, pge
      6. 2099772Domain d4qiif_: 4qii F: [267321]
        automated match to d1rjnb_
        complexed with 2ne, pge
      7. 2099773Domain d4qiig_: 4qii G: [267322]
        automated match to d1rjnb_
        complexed with 2ne, pge
      8. 2099774Domain d4qiih_: 4qii H: [267323]
        automated match to d1rjnb_
        complexed with 2ne, pge
      9. 2099775Domain d4qiii_: 4qii I: [267324]
        automated match to d1rjnb_
        complexed with 2ne, pge
      10. 2099776Domain d4qiij_: 4qii J: [267325]
        automated match to d1rjnb_
        complexed with 2ne, pge
      11. 2099777Domain d4qiik_: 4qii K: [267326]
        automated match to d1rjnb_
        complexed with 2ne, pge
      12. 2099778Domain d4qiil_: 4qii L: [267327]
        automated match to d1rjnb_
        complexed with 2ne, pge
    2. Domains for 4qij:
      1. 2099779Domain d4qija_: 4qij A: [263706]
        automated match to d1rjnb_
        complexed with 1ha
      2. 2099780Domain d4qijb_: 4qij B: [263707]
        automated match to d1rjnb_
        complexed with 1ha
      3. 2099781Domain d4qijc_: 4qij C: [261128]
        automated match to d1rjnb_
        complexed with 1ha
      4. 2099782Domain d4qijd_: 4qij D: [263708]
        automated match to d1rjnb_
        complexed with 1ha
      5. 2099783Domain d4qije_: 4qij E: [263709]
        automated match to d1rjnb_
        complexed with 1ha
      6. 2099784Domain d4qijf_: 4qij F: [263710]
        automated match to d1rjnb_
        complexed with 1ha
      7. 2099785Domain d4qijg_: 4qij G: [263711]
        automated match to d1rjnb_
        complexed with 1ha
      8. 2099786Domain d4qijh_: 4qij H: [263712]
        automated match to d1rjnb_
        complexed with 1ha
      9. 2099787Domain d4qiji_: 4qij I: [263713]
        automated match to d1rjnb_
        complexed with 1ha
      10. 2099788Domain d4qijj_: 4qij J: [263714]
        automated match to d1rjnb_
        complexed with 1ha
      11. 2099789Domain d4qijk_: 4qij K: [263715]
        automated match to d1rjnb_
        complexed with 1ha
      12. 2099790Domain d4qijl_: 4qij L: [263716]
        automated match to d1rjnb_
        complexed with 1ha
  6. 2099791Thermus thermophilus HB8 [TaxId:300852] [188102] (1 PDB entry)

More info for Protein automated matches from c.14.1.3: Crotonase-like

Timeline for Protein automated matches from c.14.1.3: Crotonase-like: