Species:

1. Aura virus [TaxId:44158] [194195] (5 PDB entries)

   1. Domain for 4agj:

      • Domain d4agja_: 4agj A: [194196] automated match to d2snwa_ complexed with dio

   2. Domain for 4agk:

      • Domain d4agka_: 4agk A: [194197] automated match to d1kxfa_

   3. Domains for 4aus:

      1. Domain d4ausa1: 4aus A:110-261 [307031] Other proteins in same PDB: d4ausa2 automated match to d1kxfa_ complexed with gol

      2. Domain d4ausb_: 4aus B: [307033] Other proteins in same PDB: d4ausa2 automated match to d1kxfa_ complexed with gol

   4. Domains for 4uon:

      1. Domain d4uona1: 4uon A:110-261 [257700] Other proteins in same PDB: d4uona2 automated match to d1kxfa_ complexed with gol

      2. Domain d4uonb_: 4uon B: [260594] Other proteins in same PDB: d4uona2 automated match to d1kxfa_ complexed with gol

   5. Domain for 5g4b:

      • Domain d5g4ba_: 5g4b A: [319769] automated match to d1kxfa_ complexed with pze

2. Hepatitis C virus subtype 1a [TaxId:31646] [226463] (21 PDB entries)

   1. Domain for 3su0:

      • Domain d3su0a1: 3su0 A:986-1180 [233631] Other proteins in same PDB: d3su0a2 automated match to d3sv8a_ complexed with so4, tsv, zn

   2. Domain for 3su1:

      • Domain d3su1a1: 3su1 A:986-1180 [233632] Other proteins in same PDB: d3su1a2 automated match to d3sv8a_ complexed with so4, tsv, zn

   3. Domain for 3su2:

      • Domain d3su2a1: 3su2 A:986-1179 [233633] Other proteins in same PDB: d3su2a2 automated match to d3sv8a_ complexed with so4, tsv, zn

   4. Domain for 3su3:

      • Domain d3su3a1: 3su3 A:986-1180 [265370] Other proteins in same PDB: d3su3a2 automated match to d3sv6a_ complexed with so4, su3, zn

   5. Domains for 3su4:

      1. Domain d3su4a_: 3su4 A: [233634] automated match to d3sv8a_ complexed with so4, su3, zn

      2. Domain d3su4b_: 3su4 B: [233635] automated match to d3sv8a_ complexed with so4, su3, zn

   6. Domain for 3su5:

      • Domain d3su5a1: 3su5 A:986-1181 [249575] Other proteins in same PDB: d3su5a2 automated match to d3su1a_ complexed with so4, su3, zn

   7. Domain for 3su6:

      • Domain d3su6a1: 3su6 A:986-1179 [249576] Other proteins in same PDB: d3su6a2 automated match to d3su2a_ complexed with gol, so4, su3, zn

   8. Domains for 3sud:

      1. Domain d3suda_: 3sud A: [265371] automated match to d3sv6a_ complexed with so4, sue, zn

      2. Domain d3sudb_: 3sud B: [265372] automated match to d3sv6a_ complexed with so4, sue, zn

      3. Domain d3sudc_: 3sud C: [265373] automated match to d3sv6a_ complexed with so4, sue, zn

      4. Domain d3sudd_: 3sud D: [265374] automated match to d3sv6a_ complexed with so4, sue, zn

   9. Domains for 3sue:

      1. Domain d3suea_: 3sue A: [233636] automated match to d3sv8a_ complexed with sue, zn

      2. Domain d3sueb_: 3sue B: [239775] automated match to d3suea_ complexed with sue, zn

      3. Domain d3suec_: 3sue C: [239776] automated match to d3suea_ complexed with sue, zn

      4. Domain d3sued_: 3sue D: [239777] automated match to d3suea_ complexed with sue, zn

   10. Domains for 3suf:

       1. Domain d3sufa_: 3suf A: [233637] automated match to d3sv8a_ complexed with so4, sue, zn

       2. Domain d3sufb_: 3suf B: [239778] automated match to d3sufa_ complexed with so4, sue, zn

       3. Domain d3sufc_: 3suf C: [239779] automated match to d3sufa_ complexed with so4, sue, zn

       4. Domain d3sufd_: 3suf D: [239780] automated match to d3sufa_ complexed with so4, sue, zn

   11. Domain for 3sug:

       • Domain d3suga1: 3sug A:986-1181 [249577] Other proteins in same PDB: d3suga2 automated match to d3su2a_ complexed with so4, sue, zn

   12. Domain for 3sv6:

       • Domain d3sv6a1: 3sv6 A:986-1181 [233642] Other proteins in same PDB: d3sv6a2 automated match to d3sv8a_ complexed with gol, so4, sv6, zn

   13. Domain for 3sv7:

       • Domain d3sv7a1: 3sv7 A:986-1180 [249583] Other proteins in same PDB: d3sv7a2 automated match to d3suea_ complexed with so4, sv6, zn

   14. Domain for 3sv8:

       • Domain d3sv8a_: 3sv8 A: [216562] automated match to d1a1qa_ complexed with gol, sv6, zn

   15. Domain for 3sv9:

       • Domain d3sv9a1: 3sv9 A:986-1180 [233643] Other proteins in same PDB: d3sv9a2 automated match to d3sv8a_ complexed with gol, so4, sv6, zn

   16. Domain for 4nwk:

       • Domain d4nwka_: 4nwk A: [238032] automated match to d3sv8a_ complexed with 2r8, gol, so4, zn

   17. Domains for 4nwl:

       1. Domain d4nwla1: 4nwl A:-10-182 [254029] Other proteins in same PDB: d4nwla2, d4nwlb2 automated match to d4nwka_ complexed with 2r9, zn

       2. Domain d4nwlb1: 4nwl B:-10-182 [254030] Other proteins in same PDB: d4nwla2, d4nwlb2 automated match to d4nwka_ complexed with 2r9, zn

   18. Domain for 4wh6:

       • Domain d4wh6a1: 4wh6 A:1004-1180 [260293] Other proteins in same PDB: d4wh6a2 automated match to d3sv7a_ complexed with 2r9, so4, zn

   19. Domains for 4wh8:

       1. Domain d4wh8a1: 4wh8 A:1004-1179 [260466] Other proteins in same PDB: d4wh8a2, d4wh8b2 automated match to d3m5la_ complexed with 3m7, so4, zn

       2. Domain d4wh8b1: 4wh8 B:1004-1179 [261475] Other proteins in same PDB: d4wh8a2, d4wh8b2 automated match to d3m5la_ complexed with 3m7, so4, zn

   20. Domain for 5voj:

       • Domain d5voja1: 5voj A:990-1180 [335859] Other proteins in same PDB: d5voja2 automated match to d3sv8a_ complexed with 9h4, so4, zn

   21. Domain for 5vp9:

       • Domain d5vp9a1: 5vp9 A:990-1180 [335884] Other proteins in same PDB: d5vp9a2 automated match to d3sv8a_ complexed with 9h7, so4, zn

3. Hepatitis C virus [TaxId:11103] [189262] (11 PDB entries)

   1. Domain for 2k1q:

      • Domain d2k1qa1: 2k1q A:22-180 [242347] Other proteins in same PDB: d2k1qa2 automated match to d1a1qa_ protein/RNA complex; complexed with zn

   2. Domains for 3kee:

      1. Domain d3keea_: 3kee A: [179300] automated match to d1a1qa_ complexed with 30b, gol, zn

      2. Domain d3keeb_: 3kee B: [179301] automated match to d1a1qa_ complexed with 30b, gol, zn

      3. Domain d3keec_: 3kee C: [179302] automated match to d1a1qa_ complexed with 30b, gol, zn

      4. Domain d3keed_: 3kee D: [179303] automated match to d1a1qa_ complexed with 30b, gol, zn

   3. Domains for 4k8b:

      1. Domain d4k8ba_: 4k8b A: [237959] automated match to d1a1qa_ complexed with 1rr, so4, zn

      2. Domain d4k8bb_: 4k8b B: [237960] automated match to d1a1qa_ complexed with 1rr, so4, zn

   4. Domain for 4wf8:

      • Domain d4wf8a1: 4wf8 A:1004-1180 [260289] Other proteins in same PDB: d4wf8a2 automated match to d3sv6a_ complexed with 2r9, cl, zn

   5. Domain for 5epn:

      • Domain d5epna_: 5epn A: [280351] automated match to d3sv6a_ complexed with 5r2, so4, zn

   6. Domain for 5epy:

      • Domain d5epya1: 5epy A:1004-1179 [280352] Other proteins in same PDB: d5epya2 automated match to d3suga_ complexed with 5r2, so4, zn

   7. Domain for 5eqq:

      • Domain d5eqqa1: 5eqq A:1004-1179 [280353] Other proteins in same PDB: d5eqqa2 automated match to d4wh8a_ complexed with 5rs, so4, zn

   8. Domain for 5eqr:

      • Domain d5eqra1: 5eqr A:1004-1179 [326384] Other proteins in same PDB: d5eqra2 automated match to d5epna_ complexed with so4, tsv, zn

   9. Domain for 5eqs:

      • Domain d5eqsa1: 5eqs A:1004-1179 [326433] Other proteins in same PDB: d5eqsa2 automated match to d5epna_ complexed with 2r9, zn

   10. Domain for 5esb:

       • Domain d5esba1: 5esb A:1004-1179 [326695] Other proteins in same PDB: d5esba2 automated match to d5epna_ complexed with so4, su3, zn

   11. Domains for 5etx:

       1. Domain d5etxa1: 5etx A:1005-1180 [280361] Other proteins in same PDB: d5etxa2, d5etxb2, d5etxc2, d5etxd2 automated match to d3sv9a_ complexed with 5rs, cl, zn

       2. Domain d5etxb1: 5etx B:1004-1180 [280360] Other proteins in same PDB: d5etxa2, d5etxb2, d5etxc2, d5etxd2 automated match to d3sv9a_ complexed with 5rs, cl, zn

       3. Domain d5etxc1: 5etx C:1004-1179 [280362] Other proteins in same PDB: d5etxa2, d5etxb2, d5etxc2, d5etxd2 automated match to d3sv9a_ complexed with 5rs, cl, zn

       4. Domain d5etxd1: 5etx D:1006-1180 [280363] Other proteins in same PDB: d5etxa2, d5etxb2, d5etxc2, d5etxd2 automated match to d3sv9a_ complexed with 5rs, cl, zn

4. West Nile virus [TaxId:11082] [187751] (2 PDB entries)

   1. Domain for 2ggv:

      • Domain d2ggvb_: 2ggv B: [164689] Other proteins in same PDB: d2ggva_ automated match to d2ijob1 mutant

   2. Domains for 3e90:

      1. Domain d3e90b_: 3e90 B: [174762] Other proteins in same PDB: d3e90a_, d3e90c_ automated match to d2ijob1 protein/RNA complex; complexed with nkk

      2. Domain d3e90d_: 3e90 D: [174763] Other proteins in same PDB: d3e90a_, d3e90c_ automated match to d2ijob1 protein/RNA complex; complexed with nkk

5. Zika virus (strain mr 766) [TaxId:64320] [324405] (2 PDB entries)

   1. Domains for 5gj4:

      1. Domain d5gj4b_: 5gj4 B: [324406] Other proteins in same PDB: d5gj4a1, d5gj4c1, d5gj4e1, d5gj4g1 automated match to d3e90d_ complexed with cl

      2. Domain d5gj4d_: 5gj4 D: [324411] Other proteins in same PDB: d5gj4a1, d5gj4c1, d5gj4e1, d5gj4g1 automated match to d3e90d_ complexed with cl

      3. Domain d5gj4f_: 5gj4 F: [324428] Other proteins in same PDB: d5gj4a1, d5gj4c1, d5gj4e1, d5gj4g1 automated match to d3e90d_ complexed with cl

      4. Domain d5gj4h_: 5gj4 H: [324474] Other proteins in same PDB: d5gj4a1, d5gj4c1, d5gj4e1, d5gj4g1 automated match to d3e90d_ complexed with cl

   2. Domain for 5h6v:

      • Domain d5h6vb_: 5h6v B: [335407] Other proteins in same PDB: d5h6va_ automated match to d3e90b_ complexed with 7hs

6. Zika virus [TaxId:64320] [327129] (2 PDB entries)

   1. Domains for 5gpi:

      1. Domain d5gpib_: 5gpi B: [327170] Other proteins in same PDB: d5gpia_, d5gpic_, d5gpie_, d5gpig_ automated match to d3e90b_

      2. Domain d5gpid_: 5gpi D: [327131] Other proteins in same PDB: d5gpia_, d5gpic_, d5gpie_, d5gpig_ automated match to d3e90b_

      3. Domain d5gpif_: 5gpi F: [327130] Other proteins in same PDB: d5gpia_, d5gpic_, d5gpie_, d5gpig_ automated match to d3e90b_

      4. Domain d5gpih_: 5gpi H: [327150] Other proteins in same PDB: d5gpia_, d5gpic_, d5gpie_, d5gpig_ automated match to d3e90b_

   2. Domain for 5h4i:

      • Domain d5h4ib_: 5h4i B: [327175] Other proteins in same PDB: d5h4ia_ automated match to d3e90b_ complexed with 7hq, act

More info for Protein automated matches from b.47.1.3: Viral proteases

Timeline for Protein automated matches from b.47.1.3: Viral proteases:

• Protein automated matches from b.47.1.3: Viral proteases first appeared in SCOPe 2.01
  
• Protein automated matches from b.47.1.3: Viral proteases appears in SCOPe 2.05
  
• Protein automated matches from b.47.1.3: Viral proteases appears in SCOPe 2.07
  
• Protein automated matches from b.47.1.3: Viral proteases appears in the current release, SCOPe 2.08