Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2344607Class b: All beta proteins [48724] (178 folds)
  3. 2387558Fold b.47: Trypsin-like serine proteases [50493] (1 superfamily)
    barrel, closed; n=6, S=8; greek-key
    duplication: consists of two domains of the same fold
  4. 2387559Superfamily b.47.1: Trypsin-like serine proteases [50494] (5 families) (S)
  5. 2389767Family b.47.1.3: Viral proteases [50596] (5 protein domains)
    beta sheet in the first domain is opened rather than forms a barrel
  6. 2389857Protein automated matches [190658] (8 species)
    not a true protein

Species:

  1. 2389858Aura virus [TaxId:44158] [194195] (5 PDB entries)
    1. Domain for 4agj:
    2. Domain for 4agk:
    3. Domains for 4aus:
      1. 2389862Domain d4ausa1: 4aus A:110-261 [307031]
        Other proteins in same PDB: d4ausa2
        automated match to d1kxfa_
        complexed with gol
      2. 2389863Domain d4ausb_: 4aus B: [307033]
        Other proteins in same PDB: d4ausa2
        automated match to d1kxfa_
        complexed with gol
    4. Domains for 4uon:
      1. 2389860Domain d4uona1: 4uon A:110-261 [257700]
        Other proteins in same PDB: d4uona2
        automated match to d1kxfa_
        complexed with gol
      2. 2389861Domain d4uonb_: 4uon B: [260594]
        Other proteins in same PDB: d4uona2
        automated match to d1kxfa_
        complexed with gol
    5. Domain for 5g4b:
  2. 2389866Hepatitis C virus subtype 1a [TaxId:31646] [226463] (20 PDB entries)
    1. Domain for 3su0:
    2. Domain for 3su1:
    3. Domain for 3su2:
    4. Domain for 3su3:
    5. Domain for 3su5:
    6. Domain for 3su6:
    7. Domains for 3sud:
      1. 2389881Domain d3suda_: 3sud A: [265371]
        automated match to d3sv6a_
        complexed with so4, sue, zn
      2. 2389882Domain d3sudb_: 3sud B: [265372]
        automated match to d3sv6a_
        complexed with so4, sue, zn
      3. 2389883Domain d3sudc_: 3sud C: [265373]
        automated match to d3sv6a_
        complexed with so4, sue, zn
      4. 2389884Domain d3sudd_: 3sud D: [265374]
        automated match to d3sv6a_
        complexed with so4, sue, zn
    8. Domains for 3sue:
      1. 2389887Domain d3suea_: 3sue A: [233636]
        automated match to d3sv8a_
        complexed with sue, zn
      2. 2389888Domain d3sueb_: 3sue B: [239775]
        automated match to d3suea_
        complexed with sue, zn
      3. 2389889Domain d3suec_: 3sue C: [239776]
        automated match to d3suea_
        complexed with sue, zn
      4. 2389890Domain d3sued_: 3sue D: [239777]
        automated match to d3suea_
        complexed with sue, zn
    9. Domains for 3suf:
      1. 2389891Domain d3sufa_: 3suf A: [233637]
        automated match to d3sv8a_
        complexed with so4, sue, zn
      2. 2389892Domain d3sufb_: 3suf B: [239778]
        automated match to d3sufa_
        complexed with so4, sue, zn
      3. 2389893Domain d3sufc_: 3suf C: [239779]
        automated match to d3sufa_
        complexed with so4, sue, zn
      4. 2389894Domain d3sufd_: 3suf D: [239780]
        automated match to d3sufa_
        complexed with so4, sue, zn
    10. Domain for 3sug:
    11. Domain for 3sv6:
    12. Domain for 3sv7:
    13. Domain for 3sv8:
    14. Domain for 3sv9:
    15. Domain for 4nwk:
    16. Domains for 4nwl:
      1. 2389885Domain d4nwla1: 4nwl A:-10-182 [254029]
        Other proteins in same PDB: d4nwla2, d4nwlb2
        automated match to d4nwka_
        complexed with 2r9, zn
      2. 2389886Domain d4nwlb1: 4nwl B:-10-182 [254030]
        Other proteins in same PDB: d4nwla2, d4nwlb2
        automated match to d4nwka_
        complexed with 2r9, zn
    17. Domain for 4wh6:
    18. Domains for 4wh8:
      1. 2389896Domain d4wh8a1: 4wh8 A:1004-1179 [260466]
        Other proteins in same PDB: d4wh8a2, d4wh8b2
        automated match to d3m5la_
        complexed with 3m7, so4, zn
      2. 2389897Domain d4wh8b1: 4wh8 B:1004-1179 [261475]
        Other proteins in same PDB: d4wh8a2, d4wh8b2
        automated match to d3m5la_
        complexed with 3m7, so4, zn
    19. Domain for 5voj:
    20. Domain for 5vp9:
  3. 2389898Hepatitis C virus [TaxId:11103] [189262] (12 PDB entries)
    1. Domain for 2k1q:
    2. Domains for 3kee:
      1. 2389903Domain d3keea_: 3kee A: [179300]
        automated match to d1a1qa_
        complexed with 30b, gol, zn
      2. 2389904Domain d3keeb_: 3kee B: [179301]
        automated match to d1a1qa_
        complexed with 30b, gol, zn
      3. 2389905Domain d3keec_: 3kee C: [179302]
        automated match to d1a1qa_
        complexed with 30b, gol, zn
      4. 2389906Domain d3keed_: 3kee D: [179303]
        automated match to d1a1qa_
        complexed with 30b, gol, zn
    3. Domains for 3su4:
      1. 2389907Domain d3su4a_: 3su4 A: [233634]
        automated match to d3sv8a_
        complexed with so4, su3, zn
      2. 2389908Domain d3su4b_: 3su4 B: [233635]
        automated match to d3sv8a_
        complexed with so4, su3, zn
    4. Domains for 4k8b:
      1. 2389916Domain d4k8ba_: 4k8b A: [237959]
        automated match to d1a1qa_
        complexed with 1rr, so4, zn
      2. 2389917Domain d4k8bb_: 4k8b B: [237960]
        automated match to d1a1qa_
        complexed with 1rr, so4, zn
    5. Domain for 4wf8:
    6. Domain for 5epn:
    7. Domain for 5epy:
    8. Domain for 5eqq:
    9. Domain for 5eqr:
    10. Domain for 5eqs:
    11. Domain for 5esb:
    12. Domains for 5etx:
      1. 2389911Domain d5etxa1: 5etx A:1005-1180 [280361]
        Other proteins in same PDB: d5etxa2, d5etxb2, d5etxc2, d5etxd2
        automated match to d3sv9a_
        complexed with 5rs, cl, zn
      2. 2389912Domain d5etxb1: 5etx B:1004-1180 [280360]
        Other proteins in same PDB: d5etxa2, d5etxb2, d5etxc2, d5etxd2
        automated match to d3sv9a_
        complexed with 5rs, cl, zn
      3. 2389913Domain d5etxc1: 5etx C:1004-1179 [280362]
        Other proteins in same PDB: d5etxa2, d5etxb2, d5etxc2, d5etxd2
        automated match to d3sv9a_
        complexed with 5rs, cl, zn
      4. 2389914Domain d5etxd1: 5etx D:1006-1180 [280363]
        Other proteins in same PDB: d5etxa2, d5etxb2, d5etxc2, d5etxd2
        automated match to d3sv9a_
        complexed with 5rs, cl, zn
  4. 2389919West Nile virus [TaxId:11082] [187751] (2 PDB entries)
    1. Domain for 2ggv:
    2. Domains for 3e90:
      1. 2389921Domain d3e90b_: 3e90 B: [174762]
        Other proteins in same PDB: d3e90a_, d3e90c_
        automated match to d2ijob1
        protein/RNA complex; complexed with nkk
      2. 2389922Domain d3e90d_: 3e90 D: [174763]
        Other proteins in same PDB: d3e90a_, d3e90c_
        automated match to d2ijob1
        protein/RNA complex; complexed with nkk
  5. 2389923Zika virus (strain mr 766) [TaxId:64320] [324405] (2 PDB entries)
    1. Domains for 5gj4:
      1. 2389924Domain d5gj4b_: 5gj4 B: [324406]
        Other proteins in same PDB: d5gj4a1, d5gj4c1, d5gj4e1, d5gj4g1
        automated match to d3e90d_
        complexed with cl
      2. 2389925Domain d5gj4d_: 5gj4 D: [324411]
        Other proteins in same PDB: d5gj4a1, d5gj4c1, d5gj4e1, d5gj4g1
        automated match to d3e90d_
        complexed with cl
      3. 2389926Domain d5gj4f_: 5gj4 F: [324428]
        Other proteins in same PDB: d5gj4a1, d5gj4c1, d5gj4e1, d5gj4g1
        automated match to d3e90d_
        complexed with cl
      4. 2389927Domain d5gj4h_: 5gj4 H: [324474]
        Other proteins in same PDB: d5gj4a1, d5gj4c1, d5gj4e1, d5gj4g1
        automated match to d3e90d_
        complexed with cl
    2. Domain for 5h6v:
  6. 2389929Zika virus [TaxId:64320] [327129] (4 PDB entries)
    1. Domains for 5gpi:
      1. 2389930Domain d5gpib_: 5gpi B: [327170]
        Other proteins in same PDB: d5gpia_, d5gpic_, d5gpie_, d5gpig_
        automated match to d3e90b_
      2. 2389931Domain d5gpid_: 5gpi D: [327131]
        Other proteins in same PDB: d5gpia_, d5gpic_, d5gpie_, d5gpig_
        automated match to d3e90b_
      3. 2389932Domain d5gpif_: 5gpi F: [327130]
        Other proteins in same PDB: d5gpia_, d5gpic_, d5gpie_, d5gpig_
        automated match to d3e90b_
      4. 2389933Domain d5gpih_: 5gpi H: [327150]
        Other proteins in same PDB: d5gpia_, d5gpic_, d5gpie_, d5gpig_
        automated match to d3e90b_
    2. Domain for 5h4i:
    3. Domains for 5yod:
      1. 3048814Domain d5yodh_: 5yod H: [348876]
        Other proteins in same PDB: d5yoda_, d5yodc_, d5yode_, d5yodg_
        automated match to d3e90b_
        complexed with bez
      2. 3048836Domain d5yodd_: 5yod D: [348898]
        Other proteins in same PDB: d5yoda_, d5yodc_, d5yode_, d5yodg_
        automated match to d3e90b_
        complexed with bez
      3. 3048855Domain d5yodb_: 5yod B: [348917]
        Other proteins in same PDB: d5yoda_, d5yodc_, d5yode_, d5yodg_
        automated match to d3e90b_
        complexed with bez
      4. 3048862Domain d5yodf_: 5yod F: [348924]
        Other proteins in same PDB: d5yoda_, d5yodc_, d5yode_, d5yodg_
        automated match to d3e90b_
        complexed with bez
    4. Domain for 5yof:
  7. 3046410Chikungunya virus [TaxId:37124] [346472] (1 PDB entry)
  8. 3055634Hepacivirus c [TaxId:11103] [355696] (3 PDB entries)
    1. Domain for 6cvw:
    2. Domain for 6cvx:
    3. Domain for 6cvy:

More info for Protein automated matches from b.47.1.3: Viral proteases

Timeline for Protein automated matches from b.47.1.3: Viral proteases: