SCOPe 2.03: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.03
Class c: Alpha and beta proteins (a/b) [51349] (147 folds)

Fold c.119: DAK1/DegV-like [82548] (1 superfamily)
2 different domains; d1: [core: 3 layers, a/b/a; parallel sheet of 5 strands, order: 2134]; D2: [2 layers, a/b; mixed sheet of 6 strands, order 321645; strands 2 and 6 are antiparallel to the rest]

Superfamily c.119.1: DAK1/DegV-like [82549] (3 families)

(S)

domain folds and architecture show some similarity to the tubulin-like GTPases; the nucleotide-binding sites of the Dihydroxyacetone kinase and tubulin families are different

Family c.119.1.0: automated matches [191443] (1 protein)
not a true family
Protein automated matches [190655] (7 species)
not a true protein

Species:

Eubacterium eligens [TaxId:39485] [188765] (1 PDB entry)
- Domain for 3fdj:
  - Domain d3fdja_: 3fdj A: [175709]
    automated match to d1pzxb_
    complexed with acy, edo, na, p6g, pg4
Eubacterium ventriosum [TaxId:411463] [189476] (1 PDB entry)
- Domains for 3nyi:
  1. Domain d3nyia_: 3nyi A: [182628]
    automated match to d1pzxb_
    complexed with ste
  2. Domain d3nyib_: 3nyi B: [182629]
    automated match to d1pzxb_
    complexed with ste
Lactococcus lactis [TaxId:1358] [188636] (3 PDB entries)
1. Domains for 2iu4:
  1. Domain d2iu4a_: 2iu4 A: [198081]
    automated match to d2iu4b_
    complexed with so4
  2. Domain d2iu4b_: 2iu4 B: [193815]
    automated match to d3ct4a_
    complexed with so4
2. Domains for 2iu6:
  1. Domain d2iu6a_: 2iu6 A: [204860]
    automated match to d2iu4b_
    complexed with gol
  2. Domain d2iu6b_: 2iu6 B: [204861]
    automated match to d2iu4b_
    complexed with gol
3. Domains for 3ct4:
  1. Domain d3ct4a_: 3ct4 A: [173443]
    automated match to d1oi2a_
    complexed with 2ha
  2. Domain d3ct4b_: 3ct4 B: [173444]
    automated match to d1oi2a_
    complexed with 2ha
  3. Domain d3ct4c_: 3ct4 C: [173445]
    automated match to d1oi2a_
    complexed with 2ha
Ruminococcus gnavus [TaxId:411470] [225774] (1 PDB entry)
- Domains for 3jr7:
  1. Domain d3jr7a_: 3jr7 A: [212056]
    automated match to d2g7za_
    complexed with na, pg6, po4
  2. Domain d3jr7b_: 3jr7 B: [212057]
    automated match to d2g7za_
    complexed with na, pg6, po4
Streptococcus agalactiae [TaxId:208435] [189256] (1 PDB entry)
- Domain for 3lup:
  - Domain d3lupa_: 3lup A: [180573]
    automated match to d1pzxb_
    complexed with ela, gol
Streptococcus pyogenes [TaxId:160490] [187737] (1 PDB entry)
- Domains for 2g7z:
  1. Domain d2g7za_: 2g7z A: [164595]
    automated match to d1mgpa_
    complexed with cl, gol, hxa, trs, zn
  2. Domain d2g7zb_: 2g7z B: [164596]
    automated match to d1mgpa_
    complexed with cl, gol, hxa, trs, zn
Thermus thermophilus [TaxId:300852] [188541] (1 PDB entry)
- Domain for 2dt8:
  - Domain d2dt8a_: 2dt8 A: [163686]
    automated match to d1mgpa_
    complexed with gol, plm, zn

More info for Protein automated matches from c.119.1.0: automated matches

Timeline for Protein automated matches from c.119.1.0: automated matches:

Protein automated matches from c.119.1.0: automated matches first appeared in SCOPe 2.01
Protein automated matches from c.119.1.0: automated matches appears in SCOPe 2.02
Protein automated matches from c.119.1.0: automated matches appears in SCOPe 2.04
Protein automated matches from c.119.1.0: automated matches appears in the current release, SCOPe 2.08