Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2150492Fold c.119: DAK1/DegV-like [82548] (1 superfamily)
    2 different domains; d1: [core: 3 layers, a/b/a; parallel sheet of 5 strands, order: 2134]; D2: [2 layers, a/b; mixed sheet of 6 strands, order 321645; strands 2 and 6 are antiparallel to the rest]
  4. 2150493Superfamily c.119.1: DAK1/DegV-like [82549] (3 families) (S)
    domain folds and architecture show some similarity to the tubulin-like GTPases; the nucleotide-binding sites of the Dihydroxyacetone kinase and tubulin families are different
  5. 2150540Family c.119.1.0: automated matches [191443] (1 protein)
    not a true family
  6. 2150541Protein automated matches [190655] (10 species)
    not a true protein

Species:

  1. 2150542Bacillus subtilis [TaxId:1423] [255836] (1 PDB entry)
  2. 2150544Eubacterium eligens [TaxId:39485] [188765] (1 PDB entry)
  3. 2150546Eubacterium ventriosum [TaxId:411463] [189476] (1 PDB entry)
  4. 2150549Lactococcus lactis [TaxId:1358] [188636] (3 PDB entries)
    1. Domains for 2iu4:
      1. 2150550Domain d2iu4a1: 2iu4 A:8-328 [198081]
        Other proteins in same PDB: d2iu4a2, d2iu4b2
        automated match to d2iu4b_
        complexed with so4
      2. 2150551Domain d2iu4b1: 2iu4 B:2-328 [193815]
        Other proteins in same PDB: d2iu4a2, d2iu4b2
        automated match to d3ct4a_
        complexed with so4
    2. Domains for 2iu6:
      1. 2150552Domain d2iu6a1: 2iu6 A:2-328 [204860]
        Other proteins in same PDB: d2iu6a2, d2iu6b2
        automated match to d2iu4b_
        complexed with gol
      2. 2150553Domain d2iu6b1: 2iu6 B:2-328 [204861]
        Other proteins in same PDB: d2iu6a2, d2iu6b2
        automated match to d2iu4b_
        complexed with gol
    3. Domains for 3ct4:
      1. 2150554Domain d3ct4a_: 3ct4 A: [173443]
        automated match to d1oi2a_
        complexed with 2ha
      2. 2150555Domain d3ct4b_: 3ct4 B: [173444]
        automated match to d1oi2a_
        complexed with 2ha
      3. 2150556Domain d3ct4c_: 3ct4 C: [173445]
        automated match to d1oi2a_
        complexed with 2ha
  5. 2150557Ruminococcus gnavus [TaxId:411470] [225774] (1 PDB entry)
  6. 2150560Streptococcus agalactiae [TaxId:208435] [189256] (1 PDB entry)
  7. 2150562Streptococcus mutans [TaxId:210007] [256022] (1 PDB entry)
  8. 2150564Streptococcus pyogenes [TaxId:160490] [187737] (1 PDB entry)
  9. 2150567Thermus thermophilus HB8 [TaxId:300852] [188541] (1 PDB entry)
  10. 2268467Staphylococcus aureus [TaxId:196620] [311773] (1 PDB entry)

More info for Protein automated matches from c.119.1.0: automated matches

Timeline for Protein automated matches from c.119.1.0: automated matches: