Lineage for Protein: automated matches

  1. Root: SCOPe 2.08
  2. Class a: All alpha proteins [46456] (290 folds)
  3. Fold a.25: Ferritin-like [47239] (6 superfamilies)
    core: 4 helices; bundle, closed, left-handed twist; 1 crossover connection
  4. Superfamily a.25.2: Cobalamin adenosyltransferase-like [89028] (3 families) (S)
    crossover loop goes across a different side of the 4-helical bundle; no internal metal-binding site
  5. Family a.25.2.0: automated matches [191442] (1 protein)
    not a true family
  6. Protein automated matches [190652] (6 species)
    not a true protein

Species:

  1. Bacillus cereus [TaxId:226900] [225983] (2 PDB entries)
    1. Domains for 3ke4:
      1. Domain d3ke4a_: 3ke4 A: [212343]
        automated match to d3ci4a_
        complexed with dio
      2. Domain d3ke4b_: 3ke4 B: [212344]
        automated match to d3ci4a_
        complexed with dio
      3. Domain d3ke4c_: 3ke4 C: [212345]
        automated match to d3ci4a_
        complexed with dio
    2. Domains for 3ke5:
      1. Domain d3ke5a_: 3ke5 A: [212346]
        automated match to d3ci4a_
        complexed with atp, mg
      2. Domain d3ke5b_: 3ke5 B: [212347]
        automated match to d3ci4a_
        complexed with atp, mg
      3. Domain d3ke5c_: 3ke5 C: [212348]
        automated match to d3ci4a_
        complexed with atp, mg
  2. Burkholderia thailandensis [TaxId:57975] [225495] (2 PDB entries)
    1. Domains for 2zhy:
      1. Domain d2zhya_: 2zhy A: [231707]
        automated match to d2zhyb_
      2. Domain d2zhyb_: 2zhy B: [207856]
        automated match to d2idxb_
      3. Domain d2zhyc_: 2zhy C: [207857]
        automated match to d2idxb_
    2. Domains for 2zhz:
      1. Domain d2zhza_: 2zhz A: [231708]
        automated match to d2zhyb_
        complexed with atp, gol, mg
      2. Domain d2zhzb_: 2zhz B: [207858]
        automated match to d2idxb_
        complexed with atp, gol, mg
      3. Domain d2zhzc_: 2zhz C: [207859]
        automated match to d2idxb_
        complexed with atp, gol, mg
  3. Human (Homo sapiens) [TaxId:9606] [187855] (3 PDB entries)
    1. Domains for 2idx:
      1. Domain d2idxa_: 2idx A: [165518]
        automated match to d1rtyb_
        complexed with atp, cl, mg, so4
      2. Domain d2idxb_: 2idx B: [165519]
        automated match to d1rtyb_
        complexed with atp, cl, mg, so4
      3. Domain d2idxc_: 2idx C: [165520]
        automated match to d1rtyb_
        complexed with atp, cl, mg, so4
    2. Domains for 6d5k:
      1. Domain d6d5ka_: 6d5k A: [358445]
        automated match to d2idxb_
        complexed with 5ad, atp, b12, epe, mg, so4
      2. Domain d6d5kb_: 6d5k B: [358481]
        automated match to d2idxb_
        complexed with 5ad, atp, b12, epe, mg, so4
      3. Domain d6d5kc_: 6d5k C: [358439]
        automated match to d2idxb_
        complexed with 5ad, atp, b12, epe, mg, so4
    3. Domains for 6d5x:
      1. Domain d6d5xa_: 6d5x A: [358593]
        automated match to d2idxb_
        complexed with 3po, 5ad, atp, b12, mg, so4
      2. Domain d6d5xb_: 6d5x B: [358527]
        automated match to d2idxb_
        complexed with 3po, 5ad, atp, b12, mg, so4
      3. Domain d6d5xc_: 6d5x C: [358485]
        automated match to d2idxb_
        complexed with 3po, 5ad, atp, b12, mg, so4
  4. Lactobacillus reuteri [TaxId:1598] [188444] (9 PDB entries)
    1. Domain for 2nt8:
    2. Domains for 2r6t:
      1. Domain d2r6ta_: 2r6t A: [167998]
        automated match to d1rtyb_
        complexed with atp, mg
      2. Domain d2r6tb_: 2r6t B: [167999]
        automated match to d1rtyb_
        complexed with atp, mg
    3. Domains for 2r6x:
      1. Domain d2r6xa_: 2r6x A: [168000]
        automated match to d1rtyb_
        complexed with atp, mg
      2. Domain d2r6xb_: 2r6x B: [168001]
        automated match to d1rtyb_
        complexed with atp, mg
    4. Domain for 3ci1:
    5. Domain for 3ci3:
    6. Domain for 3ci4:
    7. Domain for 3gah:
    8. Domain for 3gai:
    9. Domain for 3gaj:
  5. Mycobacterium tuberculosis [TaxId:1773] [187731] (5 PDB entries)
    1. Domain for 2g2d:
    2. Domain for 6wgs:
    3. Domain for 6wgu:
    4. Domain for 6wgv:
    5. Domains for 6wh5:
      1. Domain d6wh5a1: 6wh5 A:4-188 [400966]
        Other proteins in same PDB: d6wh5a2, d6wh5b2, d6wh5c2
        automated match to d3gaha_
        complexed with 3po, b12, k, mg
      2. Domain d6wh5b1: 6wh5 B:4-188 [400899]
        Other proteins in same PDB: d6wh5a2, d6wh5b2, d6wh5c2
        automated match to d3gaha_
        complexed with 3po, b12, k, mg
      3. Domain d6wh5c1: 6wh5 C:4-188 [400908]
        Other proteins in same PDB: d6wh5a2, d6wh5b2, d6wh5c2
        automated match to d3gaha_
        complexed with 3po, b12, k, mg
  6. Sulfolobus tokodaii [TaxId:273063] [225025] (2 PDB entries)
    1. Domain for 1woz:
    2. Domains for 1wvt:
      1. Domain d1wvta_: 1wvt A: [203027]
        automated match to d1noga_
      2. Domain d1wvtb_: 1wvt B: [203028]
        automated match to d1noga_
      3. Domain d1wvtc_: 1wvt C: [203029]
        automated match to d1noga_

More info for Protein automated matches from a.25.2.0: automated matches

Timeline for Protein automated matches from a.25.2.0: automated matches: