Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2352458Class b: All beta proteins [48724] (178 folds)
  3. 2378393Fold b.3: Prealbumin-like [49451] (8 superfamilies)
    sandwich; 7 strands in 2 sheets, greek-key
    variations: some members have additional 1-2 strands to common fold
  4. 2378753Superfamily b.3.4: Transthyretin (synonym: prealbumin) [49472] (2 families) (S)
  5. 2379529Family b.3.4.0: automated matches [191441] (1 protein)
    not a true family
  6. 2379530Protein automated matches [190651] (8 species)
    not a true protein

Species:

  1. 2379531Bacillus subtilis [TaxId:1423] [193190] (3 PDB entries)
    1. Domains for 2h0e:
      1. 2379532Domain d2h0ea_: 2h0e A: [204493]
        automated match to d2h0fb_
        complexed with gol
      2. 2379533Domain d2h0eb_: 2h0e B: [204494]
        automated match to d2h0fb_
        complexed with gol
    2. Domains for 2h0f:
      1. 2379534Domain d2h0fa_: 2h0f A: [197995]
        automated match to d2h0fb_
        complexed with aza
      2. 2379535Domain d2h0fb_: 2h0f B: [193191]
        automated match to d2g2nc_
        complexed with aza
    3. Domains for 2h0j:
      1. 2379536Domain d2h0ja_: 2h0j A: [204495]
        automated match to d2h0fb_
        complexed with urn
      2. 2379537Domain d2h0jb_: 2h0j B: [204496]
        automated match to d2h0fb_
        complexed with urn
  2. 2379538Brucella melitensis [TaxId:359391] [257596] (1 PDB entry)
  3. 2379541Escherichia coli K-12 [TaxId:83333] [188214] (1 PDB entry)
  4. 2379546Escherichia coli [TaxId:562] [187730] (2 PDB entries)
    1. Domains for 2g2n:
      1. 2379547Domain d2g2na_: 2g2n A: [164564]
        automated match to d1tfpa_
        complexed with so4, zn
      2. 2379548Domain d2g2nb_: 2g2n B: [164565]
        automated match to d1tfpa_
        complexed with so4, zn
      3. 2379549Domain d2g2nc_: 2g2n C: [164566]
        automated match to d1tfpa_
        complexed with so4, zn
      4. 2379550Domain d2g2nd_: 2g2n D: [164567]
        automated match to d1tfpa_
        complexed with so4, zn
    2. Domains for 2g2p:
      1. 2379551Domain d2g2pa_: 2g2p A: [164568]
        automated match to d1tfpa_
        complexed with br, so4, zn
      2. 2379552Domain d2g2pb_: 2g2p B: [164569]
        automated match to d1tfpa_
        complexed with br, so4, zn
      3. 2379553Domain d2g2pc_: 2g2p C: [164570]
        automated match to d1tfpa_
        complexed with br, so4, zn
      4. 2379554Domain d2g2pd_: 2g2p D: [164571]
        automated match to d1tfpa_
        complexed with br, so4, zn
  5. 2379555Klebsiella pneumoniae [TaxId:272620] [196215] (1 PDB entry)
  6. 2379560Salmonella enterica [TaxId:98360] [187762] (1 PDB entry)
  7. 2379563Sparus aurata [TaxId:8175] [354553] (7 PDB entries)
    1. Domains for 6gnm:
      1. 2379582Domain d6gnma_: 6gnm A: [354643]
        automated match to d1bzda_
        complexed with 27m
      2. 2379583Domain d6gnmb_: 6gnm B: [354569]
        automated match to d1bzda_
        complexed with 27m
      3. 2379584Domain d6gnmc_: 6gnm C: [354554]
        automated match to d1bzda_
        complexed with 27m
      4. 2379585Domain d6gnmd_: 6gnm D: [354603]
        automated match to d1bzda_
        complexed with 27m
    2. Domains for 6gno:
      1. 2379570Domain d6gnoa_: 6gno A: [354634]
        automated match to d1bzda_
        complexed with so4, xdi
      2. 2379571Domain d6gnob_: 6gno B: [354601]
        automated match to d1bzda_
        complexed with so4, xdi
    3. Domains for 6gnp:
      1. 2379578Domain d6gnpa_: 6gnp A: [354622]
        automated match to d1bzda_
        complexed with f4z
      2. 2379579Domain d6gnpb_: 6gnp B: [354570]
        automated match to d1bzda_
        complexed with f4z
      3. 2379580Domain d6gnpc_: 6gnp C: [354669]
        automated match to d1bzda_
        complexed with f4z
      4. 2379581Domain d6gnpd_: 6gnp D: [354683]
        automated match to d1bzda_
        complexed with f4z
    4. Domains for 6gnr:
      1. 2379564Domain d6gnra_: 6gnr A: [354606]
        automated match to d1bzda_
        complexed with 6j3
      2. 2379565Domain d6gnrb_: 6gnr B: [354596]
        automated match to d1bzda_
        complexed with 6j3
    5. Domains for 6gnw:
      1. 2379572Domain d6gnwa_: 6gnw A: [354659]
        automated match to d1bzda_
        complexed with f52
      2. 2379573Domain d6gnwb_: 6gnw B: [354610]
        automated match to d1bzda_
        complexed with f52
      3. 2379574Domain d6gnwc_: 6gnw C: [354592]
        automated match to d1bzda_
        complexed with f52
      4. 2379575Domain d6gnwd_: 6gnw D: [354628]
        automated match to d1bzda_
        complexed with f52
    6. Domains for 6gon:
      1. 2379566Domain d6gona_: 6gon A: [354605]
        automated match to d1bzda_
        complexed with 8pf
      2. 2379567Domain d6gonb_: 6gon B: [354581]
        automated match to d1bzda_
        complexed with 8pf
      3. 2379568Domain d6gonc_: 6gon C: [354613]
        automated match to d1bzda_
        complexed with 8pf
      4. 2379569Domain d6gond_: 6gon D: [354627]
        automated match to d1bzda_
        complexed with 8pf
    7. Domains for 6goo:
      1. 2379576Domain d6gooa_: 6goo A: [354633]
        automated match to d1bzda_
        complexed with 8pf
      2. 2379577Domain d6goob_: 6goo B: [354645]
        automated match to d1bzda_
        complexed with 8pf
  8. 2379586Zebrafish (Danio rerio) [TaxId:7955] [187781] (5 PDB entries)
    1. Domains for 2h1x:
      1. 2379599Domain d2h1xa_: 2h1x A: [164916]
        automated match to d1tfpa_
      2. 2379600Domain d2h1xb_: 2h1x B: [164917]
        automated match to d1tfpa_
      3. 2379601Domain d2h1xc_: 2h1x C: [164918]
        automated match to d1tfpa_
      4. 2379602Domain d2h1xd_: 2h1x D: [164919]
        automated match to d1tfpa_
    2. Domains for 2h6u:
      1. 2379591Domain d2h6ua_: 2h6u A: [164975]
        automated match to d1tfpa_
      2. 2379592Domain d2h6ub_: 2h6u B: [164976]
        automated match to d1tfpa_
      3. 2379593Domain d2h6uc_: 2h6u C: [164977]
        automated match to d1tfpa_
      4. 2379594Domain d2h6ud_: 2h6u D: [164978]
        automated match to d1tfpa_
      5. 2379595Domain d2h6ue_: 2h6u E: [164979]
        automated match to d1tfpa_
      6. 2379596Domain d2h6uf_: 2h6u F: [164980]
        automated match to d1tfpa_
      7. 2379597Domain d2h6ug_: 2h6u G: [164981]
        automated match to d1tfpa_
      8. 2379598Domain d2h6uh_: 2h6u H: [164982]
        automated match to d1tfpa_
    3. Domains for 3iwu:
      1. 2379607Domain d3iwua_: 3iwu A: [211977]
        automated match to d3q1eb_
        mutant
      2. 2379608Domain d3iwub_: 3iwu B: [211978]
        automated match to d3q1eb_
        mutant
      3. 2379609Domain d3iwuc_: 3iwu C: [211979]
        automated match to d3q1eb_
        mutant
      4. 2379610Domain d3iwud_: 3iwu D: [211980]
        automated match to d3q1eb_
        mutant
      5. 2379611Domain d3iwue_: 3iwu E: [211981]
        automated match to d3q1eb_
        mutant
      6. 2379612Domain d3iwuf_: 3iwu F: [211982]
        automated match to d3q1eb_
        mutant
      7. 2379613Domain d3iwug_: 3iwu G: [211983]
        automated match to d3q1eb_
        mutant
      8. 2379614Domain d3iwuh_: 3iwu H: [211984]
        automated match to d3q1eb_
        mutant
    4. Domains for 3iwv:
      1. 2379587Domain d3iwva_: 3iwv A: [211985]
        automated match to d3q1eb_
        mutant
      2. 2379588Domain d3iwvb_: 3iwv B: [211986]
        automated match to d3q1eb_
        mutant
      3. 2379589Domain d3iwvc_: 3iwv C: [211987]
        automated match to d3q1eb_
        mutant
      4. 2379590Domain d3iwvd_: 3iwv D: [211988]
        automated match to d3q1eb_
        mutant
    5. Domains for 3q1e:
      1. 2379603Domain d3q1ea_: 3q1e A: [184149]
        automated match to d1tfpa_
        complexed with t44; mutant
      2. 2379604Domain d3q1eb_: 3q1e B: [184150]
        automated match to d1tfpa_
        complexed with t44; mutant
      3. 2379605Domain d3q1ec_: 3q1e C: [184151]
        automated match to d1tfpa_
        complexed with t44; mutant
      4. 2379606Domain d3q1ed_: 3q1e D: [184152]
        automated match to d1tfpa_
        complexed with t44; mutant

More info for Protein automated matches from b.3.4.0: automated matches

Timeline for Protein automated matches from b.3.4.0: automated matches: