Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2344607Class b: All beta proteins [48724] (178 folds)
  3. 2364769Fold b.3: Prealbumin-like [49451] (8 superfamilies)
    sandwich; 7 strands in 2 sheets, greek-key
    variations: some members have additional 1-2 strands to common fold
  4. 2365078Superfamily b.3.4: Transthyretin (synonym: prealbumin) [49472] (2 families) (S)
  5. 2365764Family b.3.4.0: automated matches [191441] (1 protein)
    not a true family
  6. 2365765Protein automated matches [190651] (8 species)
    not a true protein

Species:

  1. 2365766Bacillus subtilis [TaxId:1423] [193190] (3 PDB entries)
    1. Domains for 2h0e:
      1. 2365767Domain d2h0ea_: 2h0e A: [204493]
        automated match to d2h0fb_
        complexed with gol
      2. 2365768Domain d2h0eb_: 2h0e B: [204494]
        automated match to d2h0fb_
        complexed with gol
    2. Domains for 2h0f:
      1. 2365769Domain d2h0fa_: 2h0f A: [197995]
        automated match to d2h0fb_
        complexed with aza
      2. 2365770Domain d2h0fb_: 2h0f B: [193191]
        automated match to d2g2nc_
        complexed with aza
    3. Domains for 2h0j:
      1. 2365771Domain d2h0ja_: 2h0j A: [204495]
        automated match to d2h0fb_
        complexed with urn
      2. 2365772Domain d2h0jb_: 2h0j B: [204496]
        automated match to d2h0fb_
        complexed with urn
  2. 2365773Brucella melitensis [TaxId:359391] [257596] (1 PDB entry)
  3. 2365776Escherichia coli K-12 [TaxId:83333] [188214] (1 PDB entry)
  4. 2365781Escherichia coli [TaxId:562] [187730] (2 PDB entries)
    1. Domains for 2g2n:
      1. 2365782Domain d2g2na_: 2g2n A: [164564]
        automated match to d1tfpa_
        complexed with so4, zn
      2. 2365783Domain d2g2nb_: 2g2n B: [164565]
        automated match to d1tfpa_
        complexed with so4, zn
      3. 2365784Domain d2g2nc_: 2g2n C: [164566]
        automated match to d1tfpa_
        complexed with so4, zn
      4. 2365785Domain d2g2nd_: 2g2n D: [164567]
        automated match to d1tfpa_
        complexed with so4, zn
    2. Domains for 2g2p:
      1. 2365786Domain d2g2pa_: 2g2p A: [164568]
        automated match to d1tfpa_
        complexed with br, so4, zn
      2. 2365787Domain d2g2pb_: 2g2p B: [164569]
        automated match to d1tfpa_
        complexed with br, so4, zn
      3. 2365788Domain d2g2pc_: 2g2p C: [164570]
        automated match to d1tfpa_
        complexed with br, so4, zn
      4. 2365789Domain d2g2pd_: 2g2p D: [164571]
        automated match to d1tfpa_
        complexed with br, so4, zn
  5. 2365790Klebsiella pneumoniae [TaxId:272620] [196215] (1 PDB entry)
  6. 2365795Salmonella enterica [TaxId:98360] [187762] (1 PDB entry)
  7. 2365798Zebrafish (Danio rerio) [TaxId:7955] [187781] (5 PDB entries)
    1. Domains for 2h1x:
      1. 2365811Domain d2h1xa_: 2h1x A: [164916]
        automated match to d1tfpa_
      2. 2365812Domain d2h1xb_: 2h1x B: [164917]
        automated match to d1tfpa_
      3. 2365813Domain d2h1xc_: 2h1x C: [164918]
        automated match to d1tfpa_
      4. 2365814Domain d2h1xd_: 2h1x D: [164919]
        automated match to d1tfpa_
    2. Domains for 2h6u:
      1. 2365803Domain d2h6ua_: 2h6u A: [164975]
        automated match to d1tfpa_
      2. 2365804Domain d2h6ub_: 2h6u B: [164976]
        automated match to d1tfpa_
      3. 2365805Domain d2h6uc_: 2h6u C: [164977]
        automated match to d1tfpa_
      4. 2365806Domain d2h6ud_: 2h6u D: [164978]
        automated match to d1tfpa_
      5. 2365807Domain d2h6ue_: 2h6u E: [164979]
        automated match to d1tfpa_
      6. 2365808Domain d2h6uf_: 2h6u F: [164980]
        automated match to d1tfpa_
      7. 2365809Domain d2h6ug_: 2h6u G: [164981]
        automated match to d1tfpa_
      8. 2365810Domain d2h6uh_: 2h6u H: [164982]
        automated match to d1tfpa_
    3. Domains for 3iwu:
      1. 2365819Domain d3iwua_: 3iwu A: [211977]
        automated match to d3q1eb_
        mutant
      2. 2365820Domain d3iwub_: 3iwu B: [211978]
        automated match to d3q1eb_
        mutant
      3. 2365821Domain d3iwuc_: 3iwu C: [211979]
        automated match to d3q1eb_
        mutant
      4. 2365822Domain d3iwud_: 3iwu D: [211980]
        automated match to d3q1eb_
        mutant
      5. 2365823Domain d3iwue_: 3iwu E: [211981]
        automated match to d3q1eb_
        mutant
      6. 2365824Domain d3iwuf_: 3iwu F: [211982]
        automated match to d3q1eb_
        mutant
      7. 2365825Domain d3iwug_: 3iwu G: [211983]
        automated match to d3q1eb_
        mutant
      8. 2365826Domain d3iwuh_: 3iwu H: [211984]
        automated match to d3q1eb_
        mutant
    4. Domains for 3iwv:
      1. 2365799Domain d3iwva_: 3iwv A: [211985]
        automated match to d3q1eb_
        mutant
      2. 2365800Domain d3iwvb_: 3iwv B: [211986]
        automated match to d3q1eb_
        mutant
      3. 2365801Domain d3iwvc_: 3iwv C: [211987]
        automated match to d3q1eb_
        mutant
      4. 2365802Domain d3iwvd_: 3iwv D: [211988]
        automated match to d3q1eb_
        mutant
    5. Domains for 3q1e:
      1. 2365815Domain d3q1ea_: 3q1e A: [184149]
        automated match to d1tfpa_
        complexed with t44; mutant
      2. 2365816Domain d3q1eb_: 3q1e B: [184150]
        automated match to d1tfpa_
        complexed with t44; mutant
      3. 2365817Domain d3q1ec_: 3q1e C: [184151]
        automated match to d1tfpa_
        complexed with t44; mutant
      4. 2365818Domain d3q1ed_: 3q1e D: [184152]
        automated match to d1tfpa_
        complexed with t44; mutant
  8. 3054491Sparus aurata [TaxId:8175] [354553] (7 PDB entries)
    1. Domains for 6gnm:
      1. 3054492Domain d6gnmc_: 6gnm C: [354554]
        automated match to d1bzda_
        complexed with 27m
      2. 3054507Domain d6gnmb_: 6gnm B: [354569]
        automated match to d1bzda_
        complexed with 27m
      3. 3054541Domain d6gnmd_: 6gnm D: [354603]
        automated match to d1bzda_
        complexed with 27m
      4. 3054581Domain d6gnma_: 6gnm A: [354643]
        automated match to d1bzda_
        complexed with 27m
    2. Domains for 6gno:
      1. 3054539Domain d6gnob_: 6gno B: [354601]
        automated match to d1bzda_
        complexed with so4, xdi
      2. 3054572Domain d6gnoa_: 6gno A: [354634]
        automated match to d1bzda_
        complexed with so4, xdi
    3. Domains for 6gnp:
      1. 3054508Domain d6gnpb_: 6gnp B: [354570]
        automated match to d1bzda_
        complexed with f4z
      2. 3054560Domain d6gnpa_: 6gnp A: [354622]
        automated match to d1bzda_
        complexed with f4z
      3. 3054607Domain d6gnpc_: 6gnp C: [354669]
        automated match to d1bzda_
        complexed with f4z
      4. 3054621Domain d6gnpd_: 6gnp D: [354683]
        automated match to d1bzda_
        complexed with f4z
    4. Domains for 6gnr:
      1. 3054534Domain d6gnrb_: 6gnr B: [354596]
        automated match to d1bzda_
        complexed with 6j3
      2. 3054544Domain d6gnra_: 6gnr A: [354606]
        automated match to d1bzda_
        complexed with 6j3
    5. Domains for 6gnw:
      1. 3054530Domain d6gnwc_: 6gnw C: [354592]
        automated match to d1bzda_
        complexed with f52
      2. 3054548Domain d6gnwb_: 6gnw B: [354610]
        automated match to d1bzda_
        complexed with f52
      3. 3054566Domain d6gnwd_: 6gnw D: [354628]
        automated match to d1bzda_
        complexed with f52
      4. 3054597Domain d6gnwa_: 6gnw A: [354659]
        automated match to d1bzda_
        complexed with f52
    6. Domains for 6gon:
      1. 3054519Domain d6gonb_: 6gon B: [354581]
        automated match to d1bzda_
        complexed with 8pf
      2. 3054543Domain d6gona_: 6gon A: [354605]
        automated match to d1bzda_
        complexed with 8pf
      3. 3054551Domain d6gonc_: 6gon C: [354613]
        automated match to d1bzda_
        complexed with 8pf
      4. 3054565Domain d6gond_: 6gon D: [354627]
        automated match to d1bzda_
        complexed with 8pf
    7. Domains for 6goo:
      1. 3054571Domain d6gooa_: 6goo A: [354633]
        automated match to d1bzda_
        complexed with 8pf
      2. 3054583Domain d6goob_: 6goo B: [354645]
        automated match to d1bzda_
        complexed with 8pf

More info for Protein automated matches from b.3.4.0: automated matches

Timeline for Protein automated matches from b.3.4.0: automated matches: