Species:

1. Actinobacillus succinogenes [TaxId:339671] [188337] (1 PDB entry)

   • Domains for 3c3k:

     1. Domain d3c3ka_: 3c3k A: [173018] automated match to d1sxga_ complexed with cl, gol

     2. Domain d3c3kb_: 3c3k B: [173019] automated match to d1sxga_ complexed with cl, gol

2. Agrobacterium tumefaciens [TaxId:176299] [225916] (6 PDB entries)

   1. Domain for 3ip5:

      • Domain d3ip5a_: 3ip5 A: [211835] automated match to d1usga_ complexed with ala, peg

   2. Domain for 3ip6:

      • Domain d3ip6a_: 3ip6 A: [211836] automated match to d1usga_ complexed with pro, so4

   3. Domain for 3ip7:

      • Domain d3ip7a_: 3ip7 A: [211837] automated match to d1usga_ complexed with ca, val

   4. Domain for 3ip9:

      • Domain d3ip9a_: 3ip9 A: [211838] automated match to d1usga_ complexed with abu, so4

   5. Domain for 3ipa:

      • Domain d3ipaa_: 3ipa A: [211839] automated match to d1usga_ complexed with ala, so4

   6. Domain for 3ipc:

      • Domain d3ipca_: 3ipc A: [211840] automated match to d1usga_ complexed with leu, so4; mutant

3. Agrobacterium vitis [TaxId:311402] [261009] (2 PDB entries)

   1. Domains for 4wt7:

      1. Domain d4wt7a_: 4wt7 A: [261010] automated match to d3l49a_ complexed with cl, x9x

      2. Domain d4wt7b_: 4wt7 B: [261014] automated match to d3l49a_ complexed with cl, x9x

   2. Domain for 4wut:

      • Domain d4wuta_: 4wut A: [262131] automated match to d2fn8a_ complexed with ca, cl, fcb

4. Alkaliphilus metalliredigens [TaxId:293826] [255780] (1 PDB entry)

   • Domains for 3ctp:

     1. Domain d3ctpa_: 3ctp A: [245530] automated match to d3kkeb_ protein/DNA complex; complexed with na, xlf

     2. Domain d3ctpb_: 3ctp B: [245531] automated match to d3kkeb_ protein/DNA complex; complexed with na, xlf

5. Anabaena variabilis [TaxId:240292] [256373] (9 PDB entries)

   1. Domains for 4nqr:

      1. Domain d4nqra_: 4nqr A: [254012] automated match to d3ipca_ complexed with ala, fmt, mg, peg; mutant

      2. Domain d4nqrb_: 4nqr B: [254013] automated match to d3ipca_ complexed with ala, fmt, mg, peg; mutant

   2. Domains for 4nv3:

      1. Domain d4nv3a_: 4nv3 A: [254025] automated match to d3ipca_ complexed with act, mg, val; mutant

      2. Domain d4nv3b_: 4nv3 B: [254026] automated match to d3ipca_ complexed with act, mg, val; mutant

   3. Domains for 4oat:

      1. Domain d4oata_: 4oat A: [254043] automated match to d3ipca_ complexed with cl, ile, mg; mutant

      2. Domain d4oatb_: 4oat B: [254044] automated match to d3ipca_ complexed with cl, ile, mg; mutant

   4. Domains for 4obb:

      1. Domain d4obba_: 4obb A: [254047] automated match to d3ipca_ complexed with 1qq, mg

      2. Domain d4obbb_: 4obb B: [254048] automated match to d3ipca_ complexed with 1qq, mg

   5. Domains for 4og2:

      1. Domain d4og2a_: 4og2 A: [254056] automated match to d3ipca_ complexed with cl, leu, mg; mutant

      2. Domain d4og2b_: 4og2 B: [254057] automated match to d3ipca_ complexed with cl, leu, mg; mutant

   6. Domains for 4otz:

      1. Domain d4otza_: 4otz A: [254063] automated match to d3ipca_ complexed with cys, mg; mutant

      2. Domain d4otzb_: 4otz B: [254064] automated match to d3ipca_ complexed with cys, mg; mutant

   7. Domain for 4qym:

      • Domain d4qymb_: 4qym B: [259000] automated match to d4nqrb_ complexed with met, mg; mutant

   8. Domain for 4rdc:

      • Domain d4rdca_: 4rdc A: [260020] automated match to d4nqrb_ complexed with fmt, gol, mg, pro; mutant

   9. Domains for 4rv5:

      1. Domain d4rv5a_: 4rv5 A: [261596] automated match to d4nqrb_

      2. Domain d4rv5b_: 4rv5 B: [261744] automated match to d4nqrb_ complexed with fmt, mg, pyr

6. Arthrobacter sp. [TaxId:290399] [260960] (1 PDB entry)

   • Domains for 4rkr:

     1. Domain d4rkra_: 4rkr A: [260961] automated match to d2nzug_ complexed with lbt

     2. Domain d4rkrb_: 4rkr B: [261146] automated match to d2nzug_ complexed with lbt

     3. Domain d4rkrd_: 4rkr D: [260962] automated match to d2nzug_ complexed with lbt

7. Bacillus cytotoxicus [TaxId:315749] [225781] (1 PDB entry)

   • Domains for 3k4h:

     1. Domain d3k4ha_: 3k4h A: [212163] automated match to d3hs3b_ complexed with mal

     2. Domain d3k4hb_: 3k4h B: [212164] automated match to d3hs3b_ complexed with mal

8. Bacillus subtilis [TaxId:1423] [226286] (2 PDB entries)

   1. Domain for 2fep:

      • Domain d2fepa_: 2fep A: [197889] Other proteins in same PDB: d2feps_ automated match to d4kmra_ complexed with so4

   2. Domains for 3tb6:

      1. Domain d3tb6a_: 3tb6 A: [216712] automated match to d2nzug_ complexed with arb, gol

      2. Domain d3tb6b_: 3tb6 B: [216713] automated match to d2nzug_ complexed with arb, gol

9. Bifidobacterium animalis [TaxId:555970] [256375] (1 PDB entry)

   • Domain for 4o5a:

     • Domain d4o5aa_: 4o5a A: [254040] automated match to d3kkeb_ complexed with gol, so4

10. Brucella melitensis [TaxId:224914] [228825] (1 PDB entry)

    • Domains for 4n0q:

      1. Domain d4n0qa_: 4n0q A: [228826] automated match to d3ip7a_ complexed with leu

      2. Domain d4n0qb_: 4n0q B: [235710] automated match to d4n0qa_ complexed with leu

      3. Domain d4n0qc_: 4n0q C: [235711] automated match to d4n0qa_ complexed with leu

      4. Domain d4n0qd_: 4n0q D: [235712] automated match to d4n0qa_ complexed with leu

11. Burkholderia phymatum [TaxId:391038] [231274] (1 PDB entry)

    • Domain for 2rgy:

      • Domain d2rgya_: 2rgy A: [235962] automated match to d3brqb_

12. Burkholderia thailandensis [TaxId:271848] [225530] (2 PDB entries)

    1. Domains for 3egc:

       1. Domain d3egca_: 3egc A: [209493] automated match to d2nzug_

       2. Domain d3egcb_: 3egc B: [209494] automated match to d2nzug_

       3. Domain d3egcc_: 3egc C: [209495] automated match to d2nzug_

       4. Domain d3egcd_: 3egc D: [209496] automated match to d2nzug_

       5. Domain d3egce_: 3egc E: [209497] automated match to d2nzug_

       6. Domain d3egcf_: 3egc F: [209498] automated match to d2nzug_

    2. Domain for 4kzk:

       • Domain d4kzka_: 4kzk A: [253473] automated match to d8abpa_ complexed with gal

13. Caulobacter crescentus [TaxId:190650] [229832] (1 PDB entry)

    • Domains for 4irx:

      1. Domain d4irxa_: 4irx A: [229834] automated match to d2fn8a_ complexed with ins

      2. Domain d4irxb_: 4irx B: [229833] automated match to d2fn8a_ complexed with ins

14. Chromobacterium violaceum [TaxId:536] [255861] (1 PDB entry)

    • Domains for 3h5o:

      1. Domain d3h5oa_: 3h5o A: [246467] automated match to d3hs3a_ complexed with so4

      2. Domain d3h5ob_: 3h5o B: [246468] automated match to d3hs3a_ complexed with so4

15. Clostridium acetobutylicum [TaxId:272562] [255840] (1 PDB entry)

    • Domain for 3g85:

      • Domain d3g85a_: 3g85 A: [246259] automated match to d2h0aa_ complexed with gol

16. Clostridium phytofermentans [TaxId:357809] [231861] (1 PDB entry)

    • Domains for 3brs:

      1. Domain d3brsa_: 3brs A: [231862] automated match to d3ksma_

      2. Domain d3brsb_: 3brs B: [231863] automated match to d3ksma_

17. Corynebacterium glutamicum [TaxId:1718] [225651] (2 PDB entries)

    1. Domains for 3gyb:

       1. Domain d3gyba_: 3gyb A: [210730] automated match to d3k9cb_ complexed with mg

       2. Domain d3gybb_: 3gyb B: [210731] automated match to d3k9cb_ complexed with mg

    2. Domains for 3jvd:

       1. Domain d3jvda_: 3jvd A: [247059] automated match to d2qu7a_ complexed with gol, so4

       2. Domain d3jvdb_: 3jvd B: [247060] automated match to d2qu7a_ complexed with gol, so4

18. Corynebacterium glutamicum [TaxId:196627] [255762] (1 PDB entry)

    • Domains for 3bil:

      1. Domain d3bila_: 3bil A: [245376] automated match to d3k4ha_

      2. Domain d3bilb_: 3bil B: [245377] automated match to d3k4ha_

19. Desulfitobacterium hafniense [TaxId:272564] [228009] (2 PDB entries)

    1. Domain for 4mlc:

       • Domain d4mlca_: 4mlc A: [228010] automated match to d3ipca_ complexed with ca, so4

    2. Domain for 4q6b:

       • Domain d4q6ba_: 4q6b A: [258319] automated match to d4mlca_ complexed with ca, edo, leu

20. Enterococcus faecalis [TaxId:226185] [231906] (2 PDB entries)

    1. Domain for 3cs3:

       • Domain d3cs3a_: 3cs3 A: [231907] automated match to d3egca_ complexed with gol, so4

    2. Domains for 4rk0:

       1. Domain d4rk0a_: 4rk0 A: [260794] automated match to d2o20b_ complexed with rib

       2. Domain d4rk0b_: 4rk0 B: [260799] automated match to d2o20b_ complexed with rib

       3. Domain d4rk0c_: 4rk0 C: [260793] automated match to d2o20b_ complexed with rib

       4. Domain d4rk0d_: 4rk0 D: [260800] automated match to d2o20b_ complexed with rib

21. Enterococcus faecium [TaxId:333849] [260801] (1 PDB entry)

    • Domains for 4rk1:

      1. Domain d4rk1a_: 4rk1 A: [260808] automated match to d3k9cb_ complexed with cl, rib

      2. Domain d4rk1c_: 4rk1 C: [260804] automated match to d3k9cb_ complexed with cl, rib

      3. Domain d4rk1f_: 4rk1 F: [260802] automated match to d3k9cb_ complexed with cl, rib

22. Escherichia coli K-12 [TaxId:83333] [225166] (3 PDB entries)

    1. Domains for 2iks:

       1. Domain d2iksa_: 2iks A: [204804] automated match to d1dbqa_

       2. Domain d2iksb_: 2iks B: [204805] automated match to d1dbqa_

    2. Domains for 3brq:

       1. Domain d3brqa_: 3brq A: [208716] automated match to d1jyfa_ complexed with fru, na, so4

       2. Domain d3brqb_: 3brq B: [208717] automated match to d1jyfa_ complexed with fru, na, so4

    3. Domains for 3dbi:

       1. Domain d3dbia_: 3dbi A: [245616] automated match to d3brqb_ protein/DNA complex; complexed with gol, po4

       2. Domain d3dbib_: 3dbi B: [245617] automated match to d3brqb_ protein/DNA complex; complexed with gol, po4

       3. Domain d3dbic_: 3dbi C: [245618] automated match to d3brqb_ protein/DNA complex; complexed with gol, po4

23. Exiguobacterium sibiricum [TaxId:262543] [255918] (1 PDB entry)

    • Domains for 3l6u:

      1. Domain d3l6ua_: 3l6u A: [247359] automated match to d2gx6a_ complexed with so4

      2. Domain d3l6ub_: 3l6u B: [247360] automated match to d2gx6a_ complexed with so4

24. Hahella chejuensis [TaxId:349521] [196493] (1 PDB entry)

    • Domains for 3ksm:

      1. Domain d3ksma_: 3ksm A: [199679] automated match to d3ksmb_ complexed with bdr

      2. Domain d3ksmb_: 3ksm B: [196494] automated match to d2ioya_ complexed with bdr

25. Human (Homo sapiens) [TaxId:9606] [189363] (2 PDB entries)

    1. Domain for 3mq4:

       • Domain d3mq4a_: 3mq4 A: [181491] automated match to d1ewka_ complexed with mg, z99

    2. Domain for 3sm9:

       • Domain d3sm9a_: 3sm9 A: [196290] automated match to d3mq4a_ complexed with cl, so4, z99

26. Klebsiella pneumoniae [TaxId:272620] [188448] (1 PDB entry)

    • Domain for 3d02:

      • Domain d3d02a_: 3d02 A: [173581] automated match to d1tjya_ complexed with cl, gol

27. Lactobacillus acidophilus [TaxId:1579] [196560] (1 PDB entry)

    • Domains for 3hs3:

      1. Domain d3hs3a_: 3hs3 A: [199523] automated match to d3hs3b_

      2. Domain d3hs3b_: 3hs3 B: [196561] automated match to d3c3ka_

28. Lactobacillus brevis [TaxId:387344] [225768] (1 PDB entry)

    • Domains for 3jy6:

      1. Domain d3jy6a_: 3jy6 A: [212141] automated match to d2nzug_ complexed with cl, edo

      2. Domain d3jy6b_: 3jy6 B: [212142] automated match to d2nzug_ complexed with cl, edo

      3. Domain d3jy6c_: 3jy6 C: [212143] automated match to d2nzug_ complexed with cl, edo

      4. Domain d3jy6d_: 3jy6 D: [212144] automated match to d2nzug_ complexed with cl, edo

29. Lactobacillus casei [TaxId:321967] [260805] (4 PDB entries)

    1. Domain for 4rk3:

       • Domain d4rk3a_: 4rk3 A: [260806] automated match to d2o20b_ complexed with gol

    2. Domain for 4rk4:

       • Domain d4rk4a_: 4rk4 A: [261151] automated match to d2o20b_ complexed with glc, na

    3. Domain for 4rk5:

       • Domain d4rk5a_: 4rk5 A: [260807] automated match to d2o20b_ complexed with act, na, suc

    4. Domain for 4wxe:

       • Domain d4wxea_: 4wxe A: [261331] automated match to d2o20b_ complexed with cl, edo, mg, trs

30. Legionella pneumophila [TaxId:272624] [233482] (1 PDB entry)

    • Domains for 3rot:

      1. Domain d3rota_: 3rot A: [233483] automated match to d3ksma_ complexed with gol

      2. Domain d3rotb_: 3rot B: [239696] automated match to d3rota_ complexed with gol

31. Mycobacterium smegmatis [TaxId:246196] [232714] (1 PDB entry)

    • Domains for 3kke:

      1. Domain d3kkea_: 3kke A: [232715] automated match to d4kmra_ complexed with act

      2. Domain d3kkeb_: 3kke B: [232716] automated match to d4kmra_ complexed with act

      3. Domain d3kkec_: 3kke C: [232717] automated match to d4kmra_ complexed with act

      4. Domain d3kked_: 3kke D: [232718] automated match to d4kmra_ complexed with act

32. Rhizobium etli [TaxId:347834] [232922] (1 PDB entry)

    • Domains for 3miz:

      1. Domain d3miza_: 3miz A: [232924] automated match to d3tb6b_

      2. Domain d3mizb_: 3miz B: [232923] automated match to d3tb6b_

33. Rhodobacter sphaeroides [TaxId:272943] [196489] (1 PDB entry)

    • Domains for 3l49:

      1. Domain d3l49a_: 3l49 A: [199689] automated match to d3l49d_ complexed with unl

      2. Domain d3l49b_: 3l49 B: [199690] automated match to d3l49d_ complexed with unl

      3. Domain d3l49c_: 3l49 C: [199691] automated match to d3l49d_ complexed with unl

      4. Domain d3l49d_: 3l49 D: [196490] automated match to d2ioya_ complexed with unl

34. Rhodobacter sphaeroides [TaxId:349102] [196798] (1 PDB entry)

    • Domains for 4joq:

      1. Domain d4joqa_: 4joq A: [196799] automated match to d1dbpa_ complexed with act, edo

      2. Domain d4joqb_: 4joq B: [202752] automated match to d4joqa_ complexed with act, edo

35. Rhodococcus jostii [TaxId:101510] [196515] (1 PDB entry)

    • Domains for 3k9c:

      1. Domain d3k9ca_: 3k9c A: [199610] automated match to d3k9cb_ complexed with gol

      2. Domain d3k9cb_: 3k9c B: [196516] automated match to d3c3ka_ complexed with gol

36. Rhodopseudomonas palustris [TaxId:1076] [255983] (1 PDB entry)

    • Domains for 3nnd:

      1. Domain d3nnda_: 3nnd A: [247973] automated match to d4n0qa_

      2. Domain d3nndb_: 3nnd B: [247974] automated match to d4n0qa_

      3. Domain d3nndc_: 3nnd C: [247975] automated match to d4n0qa_

      4. Domain d3nndd_: 3nnd D: [247976] automated match to d4n0qa_

37. Rhodopseudomonas palustris [TaxId:316058] [256081] (1 PDB entry)

    • Domain for 3sg0:

      • Domain d3sg0a_: 3sg0 A: [249434] automated match to d4gnra_ complexed with 173

38. Rhodospirillum rubrum [TaxId:269796] [255869] (1 PDB entry)

    • Domain for 3hut:

      • Domain d3huta_: 3hut A: [246576] automated match to d4gnra_

39. Sanguibacter keddieii [TaxId:446469] [197268] (1 PDB entry)

    • Domains for 4kmr:

      1. Domain d4kmra_: 4kmr A: [197269] automated match to d2nzug_ complexed with mg, na

      2. Domain d4kmrb_: 4kmr B: [202864] automated match to d4kmra_ complexed with mg, na

40. Silicibacter pomeroyi [TaxId:89184] [255808] (1 PDB entry)

    • Domains for 3e3m:

      1. Domain d3e3ma_: 3e3m A: [245793] automated match to d2nzug_

      2. Domain d3e3mb_: 3e3m B: [245794] automated match to d2nzug_

      3. Domain d3e3mc_: 3e3m C: [245795] automated match to d2nzug_

      4. Domain d3e3md_: 3e3m D: [245796] automated match to d2nzug_

41. Staphylococcus aureus [TaxId:158878] [232454] (1 PDB entry)

    • Domains for 3hcw:

      1. Domain d3hcwa_: 3hcw A: [232455] automated match to d3k4ha_ complexed with gol

      2. Domain d3hcwb_: 3hcw B: [232456] automated match to d3k4ha_ complexed with gol

42. Staphylococcus haemolyticus [TaxId:279808] [255868] (1 PDB entry)

    • Domains for 3huu:

      1. Domain d3huua_: 3huu A: [246577] automated match to d3hcwa_

      2. Domain d3huub_: 3huu B: [246578] automated match to d3hcwa_

      3. Domain d3huuc_: 3huu C: [246579] automated match to d3hcwa_

      4. Domain d3huud_: 3huu D: [246580] automated match to d3hcwa_

43. Staphylococcus saprophyticus [TaxId:342451] [225319] (2 PDB entries)

    1. Domains for 2qu7:

       1. Domain d2qu7a_: 2qu7 A: [205887] automated match to d4kmra_ complexed with cl

       2. Domain d2qu7b_: 2qu7 B: [205888] automated match to d4kmra_ complexed with cl

    2. Domains for 3e61:

       1. Domain d3e61a_: 3e61 A: [245798] automated match to d2rgya_ complexed with gol

       2. Domain d3e61b_: 3e61 B: [245799] automated match to d2rgya_ complexed with gol

44. Streptococcus pneumoniae [TaxId:637987] [234486] (1 PDB entry)

    • Domain for 4gnr:

      • Domain d4gnra_: 4gnr A: [234487] automated match to d4mlca_ complexed with cl, ile, mg

45. Thermotoga maritima [TaxId:2336] [255200] (2 PDB entries)

    1. Domain for 2h3h:

       • Domain d2h3hb_: 2h3h B: [242000] automated match to d2fn8a_ complexed with bgc

    2. Domain for 3td9:

       • Domain d3td9a_: 3td9 A: [249861] automated match to d4gnra_ complexed with edo, phe, so4

46. Thermotoga maritima [TaxId:243274] [187722] (4 PDB entries)

    1. Domain for 2fn8:

       • Domain d2fn8a_: 2fn8 A: [204247] automated match to d2fn9a_ complexed with rip

    2. Domains for 2fn9:

       1. Domain d2fn9a_: 2fn9 A: [164441] automated match to d1dbpa_

       2. Domain d2fn9b_: 2fn9 B: [164442] automated match to d1dbpa_

    3. Domains for 2qvc:

       1. Domain d2qvca_: 2qvc A: [243648] automated match to d2fn8a_ complexed with bgc

       2. Domain d2qvcb_: 2qvc B: [243649] automated match to d2fn8a_ complexed with bgc

       3. Domain d2qvcc_: 2qvc C: [243650] automated match to d2fn8a_ complexed with bgc

       4. Domain d2qvcd_: 2qvc D: [243651] automated match to d2fn8a_ complexed with bgc

    4. Domains for 3c6q:

       1. Domain d3c6qa_: 3c6q A: [245461] automated match to d2fn8a_ complexed with xyp

       2. Domain d3c6qb_: 3c6q B: [245462] automated match to d2fn8a_ complexed with xyp

       3. Domain d3c6qc_: 3c6q C: [245463] automated match to d2fn8a_ complexed with xyp

       4. Domain d3c6qd_: 3c6q D: [245464] automated match to d2fn8a_ complexed with xyp

47. Thermus thermophilus [TaxId:274] [230757] (1 PDB entry)

    • Domain for 2h0a:

      • Domain d2h0aa_: 2h0a A: [230758] automated match to d3tb6b_

48. Vibrio parahaemolyticus [TaxId:670] [225484] (1 PDB entry)

    • Domains for 3d8u:

      1. Domain d3d8ua_: 3d8u A: [209040] automated match to d3hs3b_

      2. Domain d3d8ub_: 3d8u B: [209041] automated match to d3hs3b_

49. Weissella paramesenteroides [TaxId:585506] [260797] (1 PDB entry)

    • Domain for 4rk6:

      • Domain d4rk6b_: 4rk6 B: [260798] automated match to d2nzug_ complexed with glc

More info for Protein automated matches from c.93.1.0: automated matches

Timeline for Protein automated matches from c.93.1.0: automated matches:

• Protein automated matches from c.93.1.0: automated matches first appeared in SCOPe 2.01
  
• Protein automated matches from c.93.1.0: automated matches appears in SCOPe 2.03
  
• Protein automated matches from c.93.1.0: automated matches appears in SCOPe 2.05
  
• Protein automated matches from c.93.1.0: automated matches appears in the current release, SCOPe 2.08