SCOPe 2.05: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.05
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
Fold c.42: Arginase/deacetylase [52767] (1 superfamily)
3 layers: a/b/a, parallel beta-sheet of 8 strands, order 21387456
Superfamily c.42.1: Arginase/deacetylase [52768] (3 families)
Family c.42.1.0: automated matches [191435] (1 protein)
not a true family
Protein automated matches [190626] (7 species)
not a true protein

Species:

Blood fluke (Schistosoma mansoni) [TaxId:6183] [267991] (2 PDB entries)
1. Domain for 4q3r:
  - Domain d4q3rd_: 4q3r D: [267262]
    automated match to d4hzea_
    complexed with cl, cs, gol, mn, pge, xa2
2. Domain for 4q3u:
  - Domain d4q3ud_: 4q3u D: [267263]
    automated match to d4hzea_
    complexed with gol, mn, nnh
Clostridium difficile [TaxId:272563] [225843] (1 PDB entry)
- Domain for 3lhl:
  - Domain d3lhla_: 3lhl A: [212889]
    automated match to d2ceva_
    complexed with mn, mpd, po4
Pseudomonas aeruginosa [TaxId:208964] [189976] (3 PDB entries)
1. Domains for 3nio:
  1. Domain d3nioa_: 3nio A: [182322]
    automated match to d1gq6a_
    complexed with mn
  2. Domain d3niob_: 3nio B: [182323]
    automated match to d1gq6a_
    complexed with mn
  3. Domain d3nioc_: 3nio C: [182324]
    automated match to d1gq6a_
    complexed with mn
  4. Domain d3niod_: 3nio D: [182325]
    automated match to d1gq6a_
    complexed with mn
  5. Domain d3nioe_: 3nio E: [182326]
    automated match to d1gq6a_
    complexed with mn
  6. Domain d3niof_: 3nio F: [182327]
    automated match to d1gq6a_
    complexed with mn
2. Domains for 3nip:
  1. Domain d3nipa_: 3nip A: [247937]
    automated match to d1gq6a_
    complexed with 16d
  2. Domain d3nipb_: 3nip B: [247938]
    automated match to d1gq6a_
    complexed with 16d
  3. Domain d3nipc_: 3nip C: [247939]
    automated match to d1gq6a_
    complexed with 16d
  4. Domain d3nipd_: 3nip D: [247940]
    automated match to d1gq6a_
    complexed with 16d
  5. Domain d3nipe_: 3nip E: [247941]
    automated match to d1gq6a_
    complexed with 16d
  6. Domain d3nipf_: 3nip F: [247942]
    automated match to d1gq6a_
    complexed with 16d
3. Domains for 3niq:
  1. Domain d3niqa_: 3niq A: [247943]
    automated match to d1gq6a_
    complexed with gol, mn
  2. Domain d3niqb_: 3niq B: [247944]
    automated match to d1gq6a_
    complexed with gol, mn
Thermoplasma volcanium [TaxId:273116] [226060] (1 PDB entry)
- Domains for 3pzl:
  1. Domain d3pzla_: 3pzl A: [214989]
    automated match to d2a0ma1
    complexed with mn
  2. Domain d3pzlb_: 3pzl B: [214990]
    automated match to d2a0ma1
    complexed with mn
  3. Domain d3pzlc_: 3pzl C: [214991]
    automated match to d2a0ma1
    complexed with mn
Thermus thermophilus HB8 [TaxId:300852] [187669] (1 PDB entry)
- Domains for 2eiv:
  1. Domain d2eiva_: 2eiv A: [164059]
    automated match to d1ceva_
  2. Domain d2eivc_: 2eiv C: [164060]
    automated match to d1ceva_
  3. Domain d2eivd_: 2eiv D: [164061]
    automated match to d1ceva_
  4. Domain d2eive_: 2eiv E: [164062]
    automated match to d1ceva_
  5. Domain d2eivf_: 2eiv F: [164063]
    automated match to d1ceva_
  6. Domain d2eivg_: 2eiv G: [164064]
    automated match to d1ceva_
  7. Domain d2eivh_: 2eiv H: [164065]
    automated match to d1ceva_
  8. Domain d2eivi_: 2eiv I: [164066]
    automated match to d1ceva_
  9. Domain d2eivj_: 2eiv J: [164067]
    automated match to d1ceva_
  10. Domain d2eivk_: 2eiv K: [164068]
    automated match to d1ceva_
  11. Domain d2eivl_: 2eiv L: [164069]
    automated match to d1ceva_
  12. Domain d2eivm_: 2eiv M: [164070]
    automated match to d1ceva_
Thermus thermophilus [TaxId:274] [187661] (2 PDB entries)
1. Domain for 2ef4:
  - Domain d2ef4a_: 2ef4 A: [163966]
    automated match to d1ceva_
2. Domains for 2ef5:
  1. Domain d2ef5a_: 2ef5 A: [163967]
    automated match to d1ceva_
    complexed with gai, lys, mn
  2. Domain d2ef5b_: 2ef5 B: [163968]
    automated match to d1ceva_
    complexed with gai, lys, mn
  3. Domain d2ef5d_: 2ef5 D: [163969]
    automated match to d1ceva_
    complexed with gai, lys, mn
  4. Domain d2ef5e_: 2ef5 E: [163970]
    automated match to d1ceva_
    complexed with gai, lys, mn
  5. Domain d2ef5f_: 2ef5 F: [163971]
    automated match to d1ceva_
    complexed with gai, lys, mn
  6. Domain d2ef5g_: 2ef5 G: [163972]
    automated match to d1ceva_
    complexed with gai, lys, mn
Trypanosome (Leishmania mexicana) [TaxId:5665] [226579] (5 PDB entries)
1. Domain for 4ity:
  - Domain d4itya_: 4ity A: [223388]
    automated match to d1wvaa1
    complexed with gol, mn
2. Domain for 4iu0:
  - Domain d4iu0a_: 4iu0 A: [223389]
    automated match to d1wvaa1
    complexed with abh, gol, mn
3. Domain for 4iu1:
  - Domain d4iu1a_: 4iu1 A: [223390]
    automated match to d1wvaa1
    complexed with gol, mn, nnh
4. Domain for 4iu4:
  - Domain d4iu4a_: 4iu4 A: [223391]
    automated match to d1wvaa1
    complexed with bme, gol, mn, s2c
5. Domain for 4iu5:
  - Domain d4iu5a_: 4iu5 A: [223392]
    automated match to d1wvaa1
    complexed with gol, mn, orn

More info for Protein automated matches from c.42.1.0: automated matches

Timeline for Protein automated matches from c.42.1.0: automated matches:

Protein automated matches from c.42.1.0: automated matches first appeared in SCOPe 2.01
Protein automated matches from c.42.1.0: automated matches appears in SCOPe 2.04
Protein automated matches from c.42.1.0: automated matches appears in SCOPe 2.06
Protein automated matches from c.42.1.0: automated matches appears in the current release, SCOPe 2.08