Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2413226Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2453552Fold c.42: Arginase/deacetylase [52767] (1 superfamily)
    3 layers: a/b/a, parallel beta-sheet of 8 strands, order 21387456
  4. 2453553Superfamily c.42.1: Arginase/deacetylase [52768] (3 families) (S)
  5. 2453947Family c.42.1.0: automated matches [191435] (1 protein)
    not a true family
  6. 2453948Protein automated matches [190626] (9 species)
    not a true protein

Species:

  1. 2453949Blood fluke (Schistosoma mansoni) [TaxId:6183] [267991] (10 PDB entries)
    1. Domains for 4q3p:
      1. 2453978Domain d4q3pa_: 4q3p A: [308072]
        automated match to d4q3ud_
        complexed with gol, mn
      2. 2453979Domain d4q3pb_: 4q3p B: [308073]
        automated match to d4q3ud_
        complexed with gol, mn
      3. 2453980Domain d4q3pc_: 4q3p C: [308074]
        automated match to d4q3ud_
        complexed with gol, mn
      4. 2453981Domain d4q3pd_: 4q3p D: [308075]
        automated match to d4q3ud_
        complexed with gol, mn
    2. Domains for 4q3q:
      1. 2453954Domain d4q3qa_: 4q3q A: [308076]
        automated match to d4q3ud_
        complexed with abh, gol, mn
      2. 2453955Domain d4q3qb_: 4q3q B: [308077]
        automated match to d4q3ud_
        complexed with abh, gol, mn
      3. 2453956Domain d4q3qc_: 4q3q C: [308078]
        automated match to d4q3ud_
        complexed with abh, gol, mn
      4. 2453957Domain d4q3qd_: 4q3q D: [308079]
        automated match to d4q3ud_
        complexed with abh, gol, mn
    3. Domains for 4q3r:
      1. 2453970Domain d4q3ra_: 4q3r A: [300371]
        automated match to d4q3ud_
        complexed with cl, cs, gol, mn, pge, xa2
      2. 2453971Domain d4q3rb_: 4q3r B: [300372]
        automated match to d4q3ud_
        complexed with cl, cs, gol, mn, pge, xa2
      3. 2453972Domain d4q3rc_: 4q3r C: [300373]
        automated match to d4q3ud_
        complexed with cl, cs, gol, mn, pge, xa2
      4. 2453973Domain d4q3rd_: 4q3r D: [267262]
        automated match to d4hzea_
        complexed with cl, cs, gol, mn, pge, xa2
    4. Domains for 4q3s:
      1. 2453962Domain d4q3sa_: 4q3s A: [308080]
        automated match to d4q3ud_
        complexed with gol, mn, x7a
      2. 2453963Domain d4q3sb_: 4q3s B: [308081]
        automated match to d4q3ud_
        complexed with gol, mn, x7a
      3. 2453964Domain d4q3sc_: 4q3s C: [308082]
        automated match to d4q3ud_
        complexed with gol, mn, x7a
      4. 2453965Domain d4q3sd_: 4q3s D: [308083]
        automated match to d4q3ud_
        complexed with gol, mn, x7a
    5. Domains for 4q3t:
      1. 2453966Domain d4q3ta_: 4q3t A: [308084]
        automated match to d4q3ud_
        complexed with gol, har, mn
      2. 2453967Domain d4q3tb_: 4q3t B: [308085]
        automated match to d4q3ud_
        complexed with gol, har, mn
      3. 2453968Domain d4q3tc_: 4q3t C: [308086]
        automated match to d4q3ud_
        complexed with gol, har, mn
      4. 2453969Domain d4q3td_: 4q3t D: [308087]
        automated match to d4q3ud_
        complexed with gol, har, mn
    6. Domains for 4q3u:
      1. 2453982Domain d4q3ua_: 4q3u A: [300374]
        automated match to d4q3ud_
        complexed with gol, mn, nnh
      2. 2453983Domain d4q3ub_: 4q3u B: [300375]
        automated match to d4q3ud_
        complexed with gol, mn, nnh
      3. 2453984Domain d4q3uc_: 4q3u C: [300376]
        automated match to d4q3ud_
        complexed with gol, mn, nnh
      4. 2453985Domain d4q3ud_: 4q3u D: [267263]
        automated match to d4hzea_
        complexed with gol, mn, nnh
    7. Domains for 4q3v:
      1. 2453986Domain d4q3va_: 4q3v A: [308088]
        automated match to d4q3ud_
        complexed with gol, mn, s2c
      2. 2453987Domain d4q3vb_: 4q3v B: [308089]
        automated match to d4q3ud_
        complexed with gol, mn, s2c
      3. 2453988Domain d4q3vc_: 4q3v C: [308090]
        automated match to d4q3ud_
        complexed with gol, mn, s2c
      4. 2453989Domain d4q3vd_: 4q3v D: [308091]
        automated match to d4q3ud_
        complexed with gol, mn, s2c
    8. Domains for 4q40:
      1. 2453950Domain d4q40a_: 4q40 A: [308096]
        automated match to d4q3ud_
        complexed with gol, imd, mn, val
      2. 2453951Domain d4q40b_: 4q40 B: [308097]
        automated match to d4q3ud_
        complexed with gol, imd, mn, val
      3. 2453952Domain d4q40c_: 4q40 C: [308098]
        automated match to d4q3ud_
        complexed with gol, imd, mn, val
      4. 2453953Domain d4q40d_: 4q40 D: [308099]
        automated match to d4q3ud_
        complexed with gol, imd, mn, val
    9. Domains for 4q41:
      1. 2453974Domain d4q41a_: 4q41 A: [308100]
        automated match to d4q3ud_
        complexed with gol, lys, mn
      2. 2453975Domain d4q41b_: 4q41 B: [308101]
        automated match to d4q3ud_
        complexed with gol, lys, mn
      3. 2453976Domain d4q41c_: 4q41 C: [308102]
        automated match to d4q3ud_
        complexed with gol, lys, mn
      4. 2453977Domain d4q41d_: 4q41 D: [308103]
        automated match to d4q3ud_
        complexed with gol, lys, mn
    10. Domains for 4q42:
      1. 2453958Domain d4q42a_: 4q42 A: [308104]
        automated match to d4q3ud_
        complexed with gol, mn, orn
      2. 2453959Domain d4q42b_: 4q42 B: [308105]
        automated match to d4q3ud_
        complexed with gol, mn, orn
      3. 2453960Domain d4q42c_: 4q42 C: [308106]
        automated match to d4q3ud_
        complexed with gol, mn, orn
      4. 2453961Domain d4q42d_: 4q42 D: [308107]
        automated match to d4q3ud_
        complexed with gol, mn, orn
  2. 2453990Clostridium difficile [TaxId:272563] [225843] (1 PDB entry)
  3. 2453992Pseudomonas aeruginosa, PA01 [TaxId:208964] [189976] (3 PDB entries)
    1. Domains for 3nio:
      1. 2453995Domain d3nioa_: 3nio A: [182322]
        automated match to d1gq6a_
        complexed with mn
      2. 2453996Domain d3niob_: 3nio B: [182323]
        automated match to d1gq6a_
        complexed with mn
      3. 2453997Domain d3nioc_: 3nio C: [182324]
        automated match to d1gq6a_
        complexed with mn
      4. 2453998Domain d3niod_: 3nio D: [182325]
        automated match to d1gq6a_
        complexed with mn
      5. 2453999Domain d3nioe_: 3nio E: [182326]
        automated match to d1gq6a_
        complexed with mn
      6. 2454000Domain d3niof_: 3nio F: [182327]
        automated match to d1gq6a_
        complexed with mn
    2. Domains for 3nip:
      1. 2454001Domain d3nipa_: 3nip A: [247937]
        automated match to d1gq6a_
        complexed with 16d
      2. 2454002Domain d3nipb_: 3nip B: [247938]
        automated match to d1gq6a_
        complexed with 16d
      3. 2454003Domain d3nipc_: 3nip C: [247939]
        automated match to d1gq6a_
        complexed with 16d
      4. 2454004Domain d3nipd_: 3nip D: [247940]
        automated match to d1gq6a_
        complexed with 16d
      5. 2454005Domain d3nipe_: 3nip E: [247941]
        automated match to d1gq6a_
        complexed with 16d
      6. 2454006Domain d3nipf_: 3nip F: [247942]
        automated match to d1gq6a_
        complexed with 16d
    3. Domains for 3niq:
      1. 2453993Domain d3niqa_: 3niq A: [247943]
        automated match to d1gq6a_
        complexed with gol, mn
      2. 2453994Domain d3niqb_: 3niq B: [247944]
        automated match to d1gq6a_
        complexed with gol, mn
  4. 2454007Thermoplasma volcanium [TaxId:273116] [226060] (1 PDB entry)
  5. 2454011Thermus thermophilus HB8 [TaxId:300852] [187669] (1 PDB entry)
  6. 2454024Thermus thermophilus [TaxId:274] [187661] (2 PDB entries)
    1. Domain for 2ef4:
    2. Domains for 2ef5:
      1. 2454025Domain d2ef5a_: 2ef5 A: [163967]
        automated match to d1ceva_
        complexed with gai, lys, mn
      2. 2454026Domain d2ef5b_: 2ef5 B: [163968]
        automated match to d1ceva_
        complexed with gai, lys, mn
      3. 2454027Domain d2ef5d_: 2ef5 D: [163969]
        automated match to d1ceva_
        complexed with gai, lys, mn
      4. 2454028Domain d2ef5e_: 2ef5 E: [163970]
        automated match to d1ceva_
        complexed with gai, lys, mn
      5. 2454029Domain d2ef5f_: 2ef5 F: [163971]
        automated match to d1ceva_
        complexed with gai, lys, mn
      6. 2454030Domain d2ef5g_: 2ef5 G: [163972]
        automated match to d1ceva_
        complexed with gai, lys, mn
  7. 2454032Trypanosome (Leishmania mexicana) [TaxId:5665] [226579] (7 PDB entries)
    1. Domain for 4ity:
    2. Domain for 4iu0:
    3. Domain for 4iu1:
    4. Domain for 4iu4:
    5. Domain for 4iu5:
    6. Domain for 5hj9:
    7. Domain for 5hja:
  8. 2454040Zebrafish (Danio rerio) [TaxId:7955] [319911] (29 PDB entries)
    1. Domains for 5eef:
      1. 2454065Domain d5eefa1: 5eef A:60-417 [319960]
        Other proteins in same PDB: d5eefa2, d5eefb2
        automated match to d3c10b_
        complexed with edo, nh4, so4, tsn, zn
      2. 2454066Domain d5eefb1: 5eef B:60-417 [320009]
        Other proteins in same PDB: d5eefa2, d5eefb2
        automated match to d3c10b_
        complexed with edo, nh4, so4, tsn, zn
    2. Domains for 5eei:
      1. 2454042Domain d5eeia_: 5eei A: [319974]
        automated match to d3c10c_
        complexed with cl, edo, gol, k, mg, shh, zn
      2. 2454043Domain d5eeib_: 5eei B: [319958]
        automated match to d3c10c_
        complexed with cl, edo, gol, k, mg, shh, zn
    3. Domain for 5eek:
    4. Domains for 5eem:
      1. 2454063Domain d5eema_: 5eem A: [319981]
        automated match to d3c10c_
        complexed with fmt, k, na, zn
      2. 2454064Domain d5eemb_: 5eem B: [319914]
        automated match to d3c10c_
        complexed with fmt, k, na, zn
    5. Domains for 5een:
      1. 2454055Domain d5eena_: 5een A: [319920]
        automated match to d3c10c_
        complexed with 5og, cl, k, zn
      2. 2454056Domain d5eenb_: 5een B: [319924]
        automated match to d3c10c_
        complexed with 5og, cl, k, zn
    6. Domains for 5ef7:
      1. 2454057Domain d5ef7a_: 5ef7 A: [320023]
        automated match to d3c10c_
        complexed with 5oj, k, zn
      2. 2454058Domain d5ef7b_: 5ef7 B: [320051]
        automated match to d3c10c_
        complexed with 5oj, k, zn
    7. Domains for 5ef8:
      1. 2454072Domain d5ef8a_: 5ef8 A: [319972]
        automated match to d3c10c_
        complexed with edo, gol, k, lbh, zn
      2. 2454073Domain d5ef8b_: 5ef8 B: [320050]
        automated match to d3c10c_
        complexed with edo, gol, k, lbh, zn
    8. Domain for 5efb:
    9. Domains for 5efg:
      1. 2454069Domain d5efga_: 5efg A: [319969]
        automated match to d3c10c_
        complexed with act, k, zn
      2. 2454070Domain d5efgd_: 5efg D: [319942]
        automated match to d3c10c_
        complexed with act, k, zn
    10. Domains for 5efh:
      1. 2454067Domain d5efha_: 5efh A: [319985]
        automated match to d3c10c_
        complexed with br, edo, fks, gol, k, zn
      2. 2454068Domain d5efhd_: 5efh D: [319993]
        automated match to d3c10c_
        complexed with br, edo, fks, gol, k, zn
    11. Domain for 5efj:
    12. Domain for 5efk:
      • 2454054Domain d5efkb_: 5efk B: [319929]
        automated match to d3c10c_
        complexed with edo, gol, k, mcm, no3, peg, zn; mutant
    13. Domain for 5g0g:
    14. Domain for 5g0h:
    15. Domains for 5g0i:
      1. 2454059Domain d5g0ia1: 5g0i A:58-419 [319962]
        automated match to d3c10c_
        complexed with cl, edo, k, n4r, zn
      2. 2454060Domain d5g0ia2: 5g0i A:442-801 [319963]
        automated match to d3c10c_
        complexed with cl, edo, k, n4r, zn
      3. 2454061Domain d5g0ib1: 5g0i B:59-418 [320069]
        automated match to d3c10c_
        complexed with cl, edo, k, n4r, zn
      4. 2454062Domain d5g0ib2: 5g0i B:442-801 [320070]
        automated match to d3c10c_
        complexed with cl, edo, k, n4r, zn
    16. Domains for 5w5k:
      1. 3053959Domain d5w5kc1: 5w5k C:440-798 [354021]
        Other proteins in same PDB: d5w5ka2, d5w5kb2, d5w5kc2
        automated match to d5g0ha_
        complexed with k, k70, zn
      2. 3054079Domain d5w5ka1: 5w5k A:440-798 [354141]
        Other proteins in same PDB: d5w5ka2, d5w5kb2, d5w5kc2
        automated match to d5g0ha_
        complexed with k, k70, zn
      3. 3054104Domain d5w5kb1: 5w5k B:440-798 [354166]
        Other proteins in same PDB: d5w5ka2, d5w5kb2, d5w5kc2
        automated match to d5g0ha_
        complexed with k, k70, zn
    17. Domain for 5wgi:
    18. Domain for 5wgk:
    19. Domains for 5wgl:
      1. 2454047Domain d5wgla_: 5wgl A: [342628]
        automated match to d3c10c_
        complexed with ah4, edo, flc, k, peg, zn
      2. 2454048Domain d5wglb_: 5wgl B: [342477]
        automated match to d3c10c_
        complexed with ah4, edo, flc, k, peg, zn
    20. Domains for 5wgm:
      1. 2454050Domain d5wgma1: 5wgm A:440-798 [342525]
        Other proteins in same PDB: d5wgma2, d5wgmb2, d5wgmc2
        automated match to d3c10c_
        complexed with ah7, edo, k, peg, pge, zn
      2. 2454051Domain d5wgmb1: 5wgm B:440-798 [342473]
        Other proteins in same PDB: d5wgma2, d5wgmb2, d5wgmc2
        automated match to d3c10c_
        complexed with ah7, edo, k, peg, pge, zn
      3. 2454052Domain d5wgmc1: 5wgm C:440-798 [342561]
        Other proteins in same PDB: d5wgma2, d5wgmb2, d5wgmc2
        automated match to d3c10c_
        complexed with ah7, edo, k, peg, pge, zn
    21. Domain for 6cgp:
    22. Domains for 6csp:
      1. 3052699Domain d6cspa_: 6csp A: [352761]
        automated match to d5g0ha_
        complexed with cl, edo, fbm, k, peg, zn
      2. 3052705Domain d6cspb_: 6csp B: [352767]
        automated match to d5g0ha_
        complexed with cl, edo, fbm, k, peg, zn
    23. Domains for 6csq:
      1. 3052668Domain d6csqb_: 6csq B: [352730]
        automated match to d5g0ha_
        complexed with f9p, k, zn
      2. 3052669Domain d6csqa_: 6csq A: [352731]
        automated match to d5g0ha_
        complexed with f9p, k, zn
    24. Domains for 6csr:
      1. 3052934Domain d6csra_: 6csr A: [352996]
        automated match to d5g0ha_
        complexed with bho, edo, k, zn
      2. 3052965Domain d6csrb_: 6csr B: [353027]
        automated match to d5g0ha_
        complexed with bho, edo, k, zn
    25. Domains for 6css:
      1. 3052667Domain d6cssb_: 6css B: [352729]
        automated match to d5g0ha_
        complexed with edo, fbj, k, zn
      2. 3052914Domain d6cssa_: 6css A: [352976]
        automated match to d5g0ha_
        complexed with edo, fbj, k, zn
    26. Domains for 6dvl:
      1. 3056667Domain d6dvla_: 6dvl A: [356729]
        automated match to d5g0ha_
        complexed with hbg, k, zn
      2. 3056689Domain d6dvlb_: 6dvl B: [356751]
        automated match to d5g0ha_
        complexed with hbg, k, zn
    27. Domains for 6dvm:
      1. 3056697Domain d6dvma_: 6dvm A: [356759]
        automated match to d5g0ha_
        complexed with btb, edo, hbj, k, zn
      2. 3056730Domain d6dvmb_: 6dvm B: [356792]
        automated match to d5g0ha_
        complexed with btb, edo, hbj, k, zn
      3. 3056756Domain d6dvmd_: 6dvm D: [356818]
        automated match to d5g0ha_
        complexed with btb, edo, hbj, k, zn
      4. 3056811Domain d6dvmc_: 6dvm C: [356873]
        automated match to d5g0ha_
        complexed with btb, edo, hbj, k, zn
    28. Domains for 6dvn:
      1. 3056644Domain d6dvnb_: 6dvn B: [356706]
        automated match to d5g0ha_
        complexed with edo, hb7, k, zn
      2. 3056647Domain d6dvnd_: 6dvn D: [356709]
        automated match to d5g0ha_
        complexed with edo, hb7, k, zn
      3. 3056707Domain d6dvna_: 6dvn A: [356769]
        automated match to d5g0ha_
        complexed with edo, hb7, k, zn
      4. 3056755Domain d6dvnc_: 6dvn C: [356817]
        automated match to d5g0ha_
        complexed with edo, hb7, k, zn
    29. Domain for 6dvo:
  9. 3049120Glaciozyma antarctica [TaxId:105987] [349182] (1 PDB entry)

More info for Protein automated matches from c.42.1.0: automated matches

Timeline for Protein automated matches from c.42.1.0: automated matches: