Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2434694Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2495627Fold c.56: Phosphorylase/hydrolase-like [53162] (8 superfamilies)
    core: 3 layers, a/b/a ; mixed sheet of 5 strands: order 21354; strand 4 is antiparallel to the rest; contains crossover loops
  4. 2497212Superfamily c.56.4: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) [53182] (2 families) (S)
  5. 2497275Family c.56.4.0: automated matches [191433] (1 protein)
    not a true family
  6. 2497276Protein automated matches [190623] (6 species)
    not a true protein

Species:

  1. 2497277Anthrax bacillus (Bacillus anthracis) [TaxId:1392] [225814] (1 PDB entry)
  2. 2497280Deinococcus radiodurans [TaxId:243230] [362513] (3 PDB entries)
    1. Domains for 5z40:
      1. 2497285Domain d5z40a_: 5z40 A: [362514]
        automated match to d2ebja_
      2. 2497286Domain d5z40b_: 5z40 B: [362559]
        automated match to d2ebja_
    2. Domains for 5z47:
      1. 2497283Domain d5z47a1: 5z47 A:1-210 [362522]
        Other proteins in same PDB: d5z47a2, d5z47b2
        automated match to d2ebja_
        complexed with dms
      2. 2497284Domain d5z47b1: 5z47 B:1-210 [362561]
        Other proteins in same PDB: d5z47a2, d5z47b2
        automated match to d2ebja_
        complexed with dms
    3. Domains for 5z48:
      1. 2497281Domain d5z48a1: 5z48 A:1-210 [362569]
        Other proteins in same PDB: d5z48a2, d5z48b2
        automated match to d2ebja_
        complexed with dms, na, pca
      2. 2497282Domain d5z48b1: 5z48 B:1-211 [362599]
        Other proteins in same PDB: d5z48a2, d5z48b2
        automated match to d2ebja_
        complexed with dms, na, pca
  3. 2497287Fervidobacterium islandicum [TaxId:2423] [399722] (1 PDB entry)
  4. 2497292Staphylococcus aureus [TaxId:93062] [188817] (1 PDB entry)
  5. 2497295Thermus thermophilus HB8 [TaxId:300852] [187658] (1 PDB entry)
  6. 2497298Xenorhabdus bovienii [TaxId:406818] [193515] (2 PDB entries)
    1. Domains for 4gxh:
      1. 2497303Domain d4gxha_: 4gxh A: [202307]
        automated match to d4gxhb_
        complexed with cl, po4
      2. 2497304Domain d4gxhb_: 4gxh B: [193516]
        automated match to d3ro0b_
        complexed with cl, po4
      3. 2497305Domain d4gxhc_: 4gxh C: [202308]
        automated match to d4gxhb_
        complexed with cl, po4
      4. 2497306Domain d4gxhd_: 4gxh D: [202309]
        automated match to d4gxhb_
        complexed with cl, po4
    2. Domains for 4hps:
      1. 2497299Domain d4hpsa1: 4hps A:1-206 [222708]
        Other proteins in same PDB: d4hpsa2, d4hpsb2
        automated match to d3ro0b_
        complexed with cl
      2. 2497300Domain d4hpsb1: 4hps B:1-206 [222709]
        Other proteins in same PDB: d4hpsa2, d4hpsb2
        automated match to d3ro0b_
        complexed with cl
      3. 2497301Domain d4hpsc_: 4hps C: [222710]
        Other proteins in same PDB: d4hpsa2, d4hpsb2
        automated match to d3ro0b_
        complexed with cl
      4. 2497302Domain d4hpsd_: 4hps D: [222711]
        Other proteins in same PDB: d4hpsa2, d4hpsb2
        automated match to d3ro0b_
        complexed with cl

More info for Protein automated matches from c.56.4.0: automated matches

Timeline for Protein automated matches from c.56.4.0: automated matches: