Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2148432Fold c.106: SurE-like [64166] (1 superfamily)
    3 layers: a/b/a; mixed beta-sheet of 9 strands, order 342156798; strands 3, 8 and 9 are antiparallel to the rest; left-handed crossover connection between strands 6 and 7
  4. 2148433Superfamily c.106.1: SurE-like [64167] (2 families) (S)
    some topological similarity to the N-terminal domain of Glutaminase/Asparaginase family
  5. 2148449Family c.106.1.0: automated matches [191430] (1 protein)
    not a true family
  6. 2148450Protein automated matches [190619] (7 species)
    not a true protein

Species:

  1. 2148451Aquifex aeolicus [TaxId:224324] [189062] (2 PDB entries)
    1. Domains for 2phj:
      1. 2148452Domain d2phja_: 2phj A: [304344]
        automated match to d2wqka_
        complexed with na, so4
      2. 2148453Domain d2phjb_: 2phj B: [304345]
        automated match to d2wqka_
        complexed with na, so4
    2. Domains for 2wqk:
      1. 2148454Domain d2wqka_: 2wqk A: [169567]
        automated match to d1ilvb_
        complexed with na, so4
      2. 2148455Domain d2wqkb_: 2wqk B: [169568]
        automated match to d1ilvb_
        complexed with na, so4
  2. 2148456Brucella abortus [TaxId:430066] [257661] (1 PDB entry)
  3. 2148461Coxiella burnetii [TaxId:777] [189767] (1 PDB entry)
  4. 2148464Salmonella enterica [TaxId:1412588] [276743] (1 PDB entry)
  5. 2148469Salmonella typhimurium [TaxId:99287] [196119] (10 PDB entries)
    1. Domain for 2v4n:
    2. Domains for 2v4o:
      1. 2148489Domain d2v4oa1: 2v4o A:1-253 [198381]
        Other proteins in same PDB: d2v4oa2, d2v4ob2, d2v4oc2, d2v4od2
        automated match to d2v4od_
        complexed with gol, mg, po4
      2. 2148490Domain d2v4ob1: 2v4o B:1-253 [198382]
        Other proteins in same PDB: d2v4oa2, d2v4ob2, d2v4oc2, d2v4od2
        automated match to d2v4od_
        complexed with gol, mg, po4
      3. 2148491Domain d2v4oc1: 2v4o C:1-253 [198383]
        Other proteins in same PDB: d2v4oa2, d2v4ob2, d2v4oc2, d2v4od2
        automated match to d2v4od_
        complexed with gol, mg, po4
      4. 2148492Domain d2v4od1: 2v4o D:1-253 [196120]
        Other proteins in same PDB: d2v4oa2, d2v4ob2, d2v4oc2, d2v4od2
        automated match to d3ty2a_
        complexed with gol, mg, po4
    3. Domains for 4g9o:
      1. 2148476Domain d4g9oa1: 4g9o A:1-252 [234456]
        Other proteins in same PDB: d4g9oa2
        automated match to d2v4na_
        complexed with edo, mg; mutant
      2. 2148477Domain d4g9ob_: 4g9o B: [234455]
        Other proteins in same PDB: d4g9oa2
        automated match to d2v4na_
        complexed with edo, mg; mutant
    4. Domains for 4gad:
      1. 2148482Domain d4gada1: 4gad A:1-251 [234457]
        Other proteins in same PDB: d4gada2
        automated match to d2v4na_
        complexed with gol, mg; mutant
      2. 2148483Domain d4gadb_: 4gad B: [234458]
        Other proteins in same PDB: d4gada2
        automated match to d2v4na_
        complexed with gol, mg; mutant
    5. Domain for 4ryt:
    6. Domain for 4xep:
    7. Domains for 4xer:
      1. 2148484Domain d4xera1: 4xer A:1-253 [276780]
        Other proteins in same PDB: d4xera2, d4xerb2, d4xerc2, d4xerd2
        automated match to d2v4od_
        complexed with act, ca, mg, mpd, po4; mutant
      2. 2148485Domain d4xerb1: 4xer B:1-253 [276782]
        Other proteins in same PDB: d4xera2, d4xerb2, d4xerc2, d4xerd2
        automated match to d2v4od_
        complexed with act, ca, mg, mpd, po4; mutant
      3. 2148486Domain d4xerc1: 4xer C:1-253 [276784]
        Other proteins in same PDB: d4xera2, d4xerb2, d4xerc2, d4xerd2
        automated match to d2v4od_
        complexed with act, ca, mg, mpd, po4; mutant
      4. 2148487Domain d4xerd1: 4xer D:1-253 [276783]
        Other proteins in same PDB: d4xera2, d4xerb2, d4xerc2, d4xerd2
        automated match to d2v4od_
        complexed with act, ca, mg, mpd, po4; mutant
    8. Domains for 4xgb:
      1. 2148493Domain d4xgba1: 4xgb A:1-253 [276787]
        Other proteins in same PDB: d4xgba2, d4xgbb2, d4xgbc2, d4xgbd2
        automated match to d2v4od_
        complexed with mg, mpd, po4; mutant
      2. 2148494Domain d4xgbb1: 4xgb B:1-253 [276785]
        Other proteins in same PDB: d4xgba2, d4xgbb2, d4xgbc2, d4xgbd2
        automated match to d2v4od_
        complexed with mg, mpd, po4; mutant
      3. 2148495Domain d4xgbc1: 4xgb C:1-253 [276788]
        Other proteins in same PDB: d4xgba2, d4xgbb2, d4xgbc2, d4xgbd2
        automated match to d2v4od_
        complexed with mg, mpd, po4; mutant
      4. 2148496Domain d4xgbd1: 4xgb D:1-253 [276791]
        Other proteins in same PDB: d4xgba2, d4xgbb2, d4xgbc2, d4xgbd2
        automated match to d2v4od_
        complexed with mg, mpd, po4; mutant
    9. Domains for 4xgp:
      1. 2148478Domain d4xgpa1: 4xgp A:1-253 [276786]
        Other proteins in same PDB: d4xgpa2, d4xgpb2, d4xgpc2, d4xgpd2
        automated match to d2v4od_
        complexed with ade, edo, mg, po4; mutant
      2. 2148479Domain d4xgpb1: 4xgp B:1-253 [276792]
        Other proteins in same PDB: d4xgpa2, d4xgpb2, d4xgpc2, d4xgpd2
        automated match to d2v4od_
        complexed with ade, edo, mg, po4; mutant
      3. 2148480Domain d4xgpc1: 4xgp C:1-253 [276789]
        Other proteins in same PDB: d4xgpa2, d4xgpb2, d4xgpc2, d4xgpd2
        automated match to d2v4od_
        complexed with ade, edo, mg, po4; mutant
      4. 2148481Domain d4xgpd1: 4xgp D:1-253 [276790]
        Other proteins in same PDB: d4xgpa2, d4xgpb2, d4xgpc2, d4xgpd2
        automated match to d2v4od_
        complexed with ade, edo, mg, po4; mutant
    10. Domains for 4xj7:
      1. 2148472Domain d4xj7a1: 4xj7 A:1-253 [276794]
        Other proteins in same PDB: d4xj7a2, d4xj7b2, d4xj7c2, d4xj7d2
        automated match to d2v4od_
        complexed with ade, adn, gol, mg, po4; mutant
      2. 2148473Domain d4xj7b1: 4xj7 B:1-253 [276795]
        Other proteins in same PDB: d4xj7a2, d4xj7b2, d4xj7c2, d4xj7d2
        automated match to d2v4od_
        complexed with ade, adn, gol, mg, po4; mutant
      3. 2148474Domain d4xj7c1: 4xj7 C:1-253 [276793]
        Other proteins in same PDB: d4xj7a2, d4xj7b2, d4xj7c2, d4xj7d2
        automated match to d2v4od_
        complexed with ade, adn, gol, mg, po4; mutant
      4. 2148475Domain d4xj7d1: 4xj7 D:1-253 [276796]
        Other proteins in same PDB: d4xj7a2, d4xj7b2, d4xj7c2, d4xj7d2
        automated match to d2v4od_
        complexed with ade, adn, gol, mg, po4; mutant
  6. 2148497Thermus thermophilus HB8 [TaxId:300852] [187651] (6 PDB entries)
    1. Domains for 2e69:
      1. 2148506Domain d2e69a_: 2e69 A: [163846]
        automated match to d1ilva_
        complexed with gol, so4
      2. 2148507Domain d2e69b_: 2e69 B: [163847]
        automated match to d1ilva_
        complexed with gol, so4
      3. 2148508Domain d2e69c_: 2e69 C: [163848]
        automated match to d1ilva_
        complexed with gol, so4
      4. 2148509Domain d2e69d_: 2e69 D: [163849]
        automated match to d1ilva_
        complexed with gol, so4
    2. Domains for 2e6b:
      1. 2148510Domain d2e6ba_: 2e6b A: [163852]
        automated match to d1ilva_
        complexed with gol, mg, so4, wo4
      2. 2148511Domain d2e6bb_: 2e6b B: [163853]
        automated match to d1ilva_
        complexed with gol, mg, so4, wo4
      3. 2148512Domain d2e6bc_: 2e6b C: [163854]
        automated match to d1ilva_
        complexed with gol, mg, so4, wo4
      4. 2148513Domain d2e6bd_: 2e6b D: [163855]
        automated match to d1ilva_
        complexed with gol, mg, so4, wo4
    3. Domains for 2e6c:
      1. 2148498Domain d2e6ca_: 2e6c A: [163856]
        automated match to d1ilva_
        complexed with gol, mn, so4
      2. 2148499Domain d2e6cb_: 2e6c B: [163857]
        automated match to d1ilva_
        complexed with gol, mn, so4
      3. 2148500Domain d2e6cc_: 2e6c C: [163858]
        automated match to d1ilva_
        complexed with gol, mn, so4
      4. 2148501Domain d2e6cd_: 2e6c D: [163859]
        automated match to d1ilva_
        complexed with gol, mn, so4
    4. Domains for 2e6e:
      1. 2148514Domain d2e6ea_: 2e6e A: [163862]
        automated match to d1ilva_
      2. 2148515Domain d2e6eb_: 2e6e B: [163863]
        automated match to d1ilva_
      3. 2148516Domain d2e6ec_: 2e6e C: [163864]
        automated match to d1ilva_
      4. 2148517Domain d2e6ed_: 2e6e D: [163865]
        automated match to d1ilva_
    5. Domains for 2e6g:
      1. 2148518Domain d2e6ga_: 2e6g A: [163868]
        automated match to d1ilva_
        complexed with po4
      2. 2148519Domain d2e6gb_: 2e6g B: [163869]
        automated match to d1ilva_
        complexed with po4
      3. 2148520Domain d2e6gc_: 2e6g C: [163870]
        automated match to d1ilva_
        complexed with po4
      4. 2148521Domain d2e6gd_: 2e6g D: [163871]
        automated match to d1ilva_
        complexed with po4
      5. 2148522Domain d2e6ge_: 2e6g E: [163872]
        automated match to d1ilva_
        complexed with po4
      6. 2148523Domain d2e6gf_: 2e6g F: [163873]
        automated match to d1ilva_
        complexed with po4
      7. 2148524Domain d2e6gg_: 2e6g G: [163874]
        automated match to d1ilva_
        complexed with po4
      8. 2148525Domain d2e6gh_: 2e6g H: [163875]
        automated match to d1ilva_
        complexed with po4
      9. 2148526Domain d2e6gi_: 2e6g I: [163876]
        automated match to d1ilva_
        complexed with po4
      10. 2148527Domain d2e6gj_: 2e6g J: [163877]
        automated match to d1ilva_
        complexed with po4
      11. 2148528Domain d2e6gk_: 2e6g K: [163878]
        automated match to d1ilva_
        complexed with po4
      12. 2148529Domain d2e6gl_: 2e6g L: [163879]
        automated match to d1ilva_
        complexed with po4
    6. Domains for 2e6h:
      1. 2148502Domain d2e6ha_: 2e6h A: [163880]
        automated match to d1ilva_
        complexed with gol, mn, so4; mutant
      2. 2148503Domain d2e6hb_: 2e6h B: [163881]
        automated match to d1ilva_
        complexed with gol, mn, so4; mutant
      3. 2148504Domain d2e6hc_: 2e6h C: [163882]
        automated match to d1ilva_
        complexed with gol, mn, so4; mutant
      4. 2148505Domain d2e6hd_: 2e6h D: [163883]
        automated match to d1ilva_
        complexed with gol, mn, so4; mutant
  7. 2293503Xylella fastidiosa [TaxId:160492] [336804] (4 PDB entries)
    1. Domains for 5ksq:
      1. 2293504Domain d5ksqa_: 5ksq A: [336805]
        automated match to d2v4na_
        complexed with iod, mn, po4
      2. 2293592Domain d5ksqb_: 5ksq B: [336893]
        automated match to d2v4na_
        complexed with iod, mn, po4
    2. Domains for 5ksr:
      1. 2293520Domain d5ksrd_: 5ksr D: [336821]
        automated match to d2v4na_
        complexed with cl, iod, mn
      2. 2293531Domain d5ksrc_: 5ksr C: [336832]
        automated match to d2v4na_
        complexed with cl, iod, mn
      3. 2293574Domain d5ksra_: 5ksr A: [336875]
        automated match to d2v4na_
        complexed with cl, iod, mn
      4. 2293621Domain d5ksrb_: 5ksr B: [336922]
        automated match to d2v4na_
        complexed with cl, iod, mn
    3. Domains for 5kss:
      1. 2293532Domain d5kssb_: 5kss B: [336833]
        automated match to d2v4na_
        complexed with cl, iod, mn
      2. 2293595Domain d5kssa_: 5kss A: [336896]
        automated match to d2v4na_
        complexed with cl, iod, mn
    4. Domains for 5kst:
      1. 2293525Domain d5kstd_: 5kst D: [336826]
        automated match to d2v4na_
        complexed with iod, mn, po4
      2. 2293545Domain d5kstc_: 5kst C: [336846]
        automated match to d2v4na_
        complexed with iod, mn, po4
      3. 2293567Domain d5ksta_: 5kst A: [336868]
        automated match to d2v4na_
        complexed with iod, mn, po4
      4. 2293572Domain d5kstb_: 5kst B: [336873]
        automated match to d2v4na_
        complexed with iod, mn, po4

More info for Protein automated matches from c.106.1.0: automated matches

Timeline for Protein automated matches from c.106.1.0: automated matches: