Lineage for Protein: automated matches

  1. Root: SCOPe 2.04
  2. 1510239Class b: All beta proteins [48724] (176 folds)
  3. 1543030Fold b.42: beta-Trefoil [50352] (8 superfamilies)
    barrel, closed; n=6, S=12; and a hairpin triplet; meander
    duplication: has internal pseudo threefold symmetry
  4. 1543418Superfamily b.42.2: Ricin B-like lectins [50370] (4 families) (S)
  5. 1543419Family b.42.2.1: Ricin B-like [50371] (11 proteins)
  6. 1543582Protein automated matches [190608] (3 species)
    not a true protein

Species:

  1. 1543583Clostridium botulinum [TaxId:1491] [230685] (3 PDB entries)
    1. Domains for 2e4m:
      1. 1543592Domain d2e4ma1: 2e4m A:2-148 [230686]
        automated match to d1qxma1
      2. 1543593Domain d2e4ma2: 2e4m A:149-286 [230687]
        automated match to d1qxma2
      3. 1543594Domain d2e4mb1: 2e4m B:2-148 [230688]
        automated match to d1qxma1
      4. 1543595Domain d2e4mb2: 2e4m B:149-286 [230689]
        automated match to d1qxma2
    2. Domains for 3aj5:
      1. 1543588Domain d3aj5a1: 3aj5 A:4-148 [231795]
        automated match to d1qxma1
        complexed with nga
      2. 1543589Domain d3aj5a2: 3aj5 A:149-286 [231800]
        automated match to d1qxma2
        complexed with nga
      3. 1543590Domain d3aj5b1: 3aj5 B:4-148 [231796]
        automated match to d1qxma1
        complexed with nga
      4. 1543591Domain d3aj5b2: 3aj5 B:149-286 [231801]
        automated match to d1qxma2
        complexed with nga
    3. Domains for 3aj6:
      1. 1543584Domain d3aj6a1: 3aj6 A:4-148 [231797]
        automated match to d1qxma1
        complexed with nga; mutant
      2. 1543585Domain d3aj6a2: 3aj6 A:149-286 [231799]
        automated match to d1qxma2
        complexed with nga; mutant
      3. 1543586Domain d3aj6b1: 3aj6 B:3-148 [231798]
        automated match to d1qxma1
        complexed with nga; mutant
      4. 1543587Domain d3aj6b2: 3aj6 B:149-286 [231802]
        automated match to d1qxma2
        complexed with nga; mutant
  2. 1543596Common earthworm (Lumbricus terrestris) [TaxId:6398] [187630] (3 PDB entries)
    1. Domains for 2dry:
      1. 1543599Domain d2drya_: 2dry A: [163668]
        automated match to d2zqna1
        complexed with pge, so4; mutant
      2. 1543600Domain d2dryb_: 2dry B: [163669]
        automated match to d2zqna1
        complexed with pge, so4; mutant
    2. Domains for 2drz:
      1. 1543601Domain d2drza_: 2drz A: [163670]
        automated match to d2zqna1
        complexed with so4; mutant
      2. 1543602Domain d2drzb_: 2drz B: [163671]
        automated match to d2zqna1
        complexed with so4; mutant
    3. Domains for 2ds0:
      1. 1543597Domain d2ds0a_: 2ds0 A: [163672]
        automated match to d2zqna1
        complexed with so4; mutant
      2. 1543598Domain d2ds0b_: 2ds0 B: [163673]
        automated match to d2zqna1
        complexed with so4; mutant
  3. 1543603European mistletoe (Viscum album) [TaxId:3972] [225471] (5 PDB entries)
    1. Domains for 2rg9:
      1. 1543606Domain d2rg9b1: 2rg9 B:1-137 [152008]
        Other proteins in same PDB: d2rg9a_
        automated match to d2rg9b1
        complexed with azi, cl, gol, nag, so4
      2. 1543607Domain d2rg9b2: 2rg9 B:138-263 [152009]
        Other proteins in same PDB: d2rg9a_
        automated match to d1sz6b2
        complexed with azi, cl, gol, nag, so4
    2. Domains for 3d7w:
      1. 1543610Domain d3d7wb1: 3d7w B:249-384 [157434]
        Other proteins in same PDB: d3d7wa_
        automated match to d2rg9b1
        complexed with gol, nag, so4, zea, zez
      2. 1543611Domain d3d7wb2: 3d7w B:385-510 [157435]
        Other proteins in same PDB: d3d7wa_
        automated match to d1sz6b2
        complexed with gol, nag, so4, zea, zez
    3. Domains for 3o5w:
      1. 1543608Domain d3o5wb1: 3o5w B:249-384 [200012]
        Other proteins in same PDB: d3o5wa_
        automated match to d1oqlb1
        complexed with gol, h35, nag, so4
      2. 1543609Domain d3o5wb2: 3o5w B:385-510 [200013]
        Other proteins in same PDB: d3o5wa_
        automated match to d1oqlb2
        complexed with gol, h35, nag, so4
    4. Domains for 4eb2:
      1. 1543604Domain d4eb2b1: 4eb2 B:1-137 [201825]
        Other proteins in same PDB: d4eb2a_
        automated match to d2rg9b1
        complexed with azi, cl, edo, gol, nag, peg, so4
      2. 1543605Domain d4eb2b2: 4eb2 B:138-263 [201826]
        Other proteins in same PDB: d4eb2a_
        automated match to d1sz6b2
        complexed with azi, cl, edo, gol, nag, peg, so4
    5. Domains for 4jkx:
      1. 1543612Domain d4jkxb1: 4jkx B:1-137 [256794]
        Other proteins in same PDB: d4jkxa_
        automated match to d1sz6b1
        complexed with azi, cl, dio, edo, gol, h35, nag, so4
      2. 1543613Domain d4jkxb2: 4jkx B:138-263 [256795]
        Other proteins in same PDB: d4jkxa_
        automated match to d1sz6b2
        complexed with azi, cl, dio, edo, gol, h35, nag, so4

More info for Protein automated matches from b.42.2.1: Ricin B-like

Timeline for Protein automated matches from b.42.2.1: Ricin B-like: