Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2344607Class b: All beta proteins [48724] (178 folds)
  3. 2384842Fold b.42: beta-Trefoil [50352] (8 superfamilies)
    barrel, closed; n=6, S=12; and a hairpin triplet; meander
    duplication: has internal pseudo threefold symmetry
  4. 2385272Superfamily b.42.2: Ricin B-like lectins [50370] (4 families) (S)
  5. 2385273Family b.42.2.1: Ricin B-like [50371] (11 proteins)
  6. 2385440Protein automated matches [190608] (4 species)
    not a true protein

Species:

  1. 2385441Clostridium botulinum [TaxId:1491] [230685] (7 PDB entries)
    1. Domains for 2e4m:
      1. 2385458Domain d2e4ma1: 2e4m A:2-148 [230686]
        automated match to d1qxma1
      2. 2385459Domain d2e4ma2: 2e4m A:149-286 [230687]
        automated match to d1qxma2
      3. 2385460Domain d2e4mb1: 2e4m B:2-148 [230688]
        automated match to d1qxma1
      4. 2385461Domain d2e4mb2: 2e4m B:149-286 [230689]
        automated match to d1qxma2
    2. Domains for 2ehi:
      1. 2385462Domain d2ehia3: 2ehi A:4-148 [303767]
        Other proteins in same PDB: d2ehib5
        automated match to d2e4ma1
        complexed with sia
      2. 2385463Domain d2ehia4: 2ehi A:149-286 [303768]
        Other proteins in same PDB: d2ehib5
        automated match to d2e4ma2
        complexed with sia
      3. 2385464Domain d2ehib3: 2ehi B:1-148 [303769]
        Other proteins in same PDB: d2ehib5
        automated match to d2e4ma1
        complexed with sia
      4. 2385465Domain d2ehib4: 2ehi B:149-286 [303770]
        Other proteins in same PDB: d2ehib5
        automated match to d2e4ma2
        complexed with sia
    3. Domains for 2ehm:
      1. 2385450Domain d2ehma3: 2ehm A:4-148 [303774]
        automated match to d2e4ma1
        complexed with nga
      2. 2385451Domain d2ehma4: 2ehm A:149-286 [303775]
        automated match to d2e4ma2
        complexed with nga
      3. 2385452Domain d2ehmb3: 2ehm B:4-148 [303776]
        automated match to d2e4ma1
        complexed with nga
      4. 2385453Domain d2ehmb4: 2ehm B:149-286 [303777]
        automated match to d2e4ma2
        complexed with nga
    4. Domains for 2ehn:
      1. 2385454Domain d2ehna3: 2ehn A:4-148 [303778]
        automated match to d2e4ma1
        complexed with gal
      2. 2385455Domain d2ehna4: 2ehn A:149-286 [303779]
        automated match to d2e4ma2
        complexed with gal
      3. 2385456Domain d2ehnb3: 2ehn B:2-148 [303780]
        automated match to d2e4ma1
        complexed with gal
      4. 2385457Domain d2ehnb4: 2ehn B:149-286 [303781]
        automated match to d2e4ma2
        complexed with gal
    5. Domains for 3aj5:
      1. 2385446Domain d3aj5a1: 3aj5 A:4-148 [231795]
        automated match to d1qxma1
        complexed with nga
      2. 2385447Domain d3aj5a2: 3aj5 A:149-286 [231800]
        automated match to d1qxma2
        complexed with nga
      3. 2385448Domain d3aj5b1: 3aj5 B:4-148 [231796]
        automated match to d1qxma1
        complexed with nga
      4. 2385449Domain d3aj5b2: 3aj5 B:149-286 [231801]
        automated match to d1qxma2
        complexed with nga
    6. Domains for 3aj6:
      1. 2385442Domain d3aj6a1: 3aj6 A:4-148 [231797]
        automated match to d1qxma1
        complexed with nga; mutant
      2. 2385443Domain d3aj6a2: 3aj6 A:149-286 [231799]
        automated match to d1qxma2
        complexed with nga; mutant
      3. 2385444Domain d3aj6b1: 3aj6 B:3-148 [231798]
        automated match to d1qxma1
        complexed with nga; mutant
      4. 2385445Domain d3aj6b2: 3aj6 B:149-286 [231802]
        automated match to d1qxma2
        complexed with nga; mutant
    7. Domains for 5b2h:
      1. 2385466Domain d5b2ha1: 5b2h A:3-148 [318579]
        automated match to d2e4ma1
        complexed with pge
      2. 2385467Domain d5b2ha2: 5b2h A:149-285 [318580]
        automated match to d2e4ma2
        complexed with pge
      3. 2385468Domain d5b2hb1: 5b2h B:3-148 [318631]
        automated match to d2e4ma1
        complexed with pge
      4. 2385469Domain d5b2hb2: 5b2h B:149-285 [318632]
        automated match to d2e4ma2
        complexed with pge
  2. 2385470Common earthworm (Lumbricus terrestris) [TaxId:6398] [187630] (3 PDB entries)
    1. Domains for 2dry:
      1. 2385473Domain d2drya_: 2dry A: [163668]
        automated match to d2zqna1
        complexed with pge, so4; mutant
      2. 2385474Domain d2dryb_: 2dry B: [163669]
        automated match to d2zqna1
        complexed with pge, so4; mutant
    2. Domains for 2drz:
      1. 2385475Domain d2drza_: 2drz A: [163670]
        automated match to d2zqna1
        complexed with so4; mutant
      2. 2385476Domain d2drzb_: 2drz B: [163671]
        automated match to d2zqna1
        complexed with so4; mutant
    3. Domains for 2ds0:
      1. 2385471Domain d2ds0a_: 2ds0 A: [163672]
        automated match to d2zqna1
        complexed with so4; mutant
      2. 2385472Domain d2ds0b_: 2ds0 B: [163673]
        automated match to d2zqna1
        complexed with so4; mutant
  3. 2385477European mistletoe (Viscum album) [TaxId:3972] [225471] (7 PDB entries)
    1. Domains for 2rg9:
      1. 2385480Domain d2rg9b1: 2rg9 B:1-137 [152008]
        Other proteins in same PDB: d2rg9a_
        automated match to d2rg9b1
        complexed with azi, cl, gol, nag, so4
      2. 2385481Domain d2rg9b2: 2rg9 B:138-263 [152009]
        Other proteins in same PDB: d2rg9a_
        automated match to d1sz6b2
        complexed with azi, cl, gol, nag, so4
    2. Domains for 3cef:
      1. 2385482Domain d3cefb1: 3cef B:249-384 [305163]
        Other proteins in same PDB: d3cefa_
        automated match to d4jkxb1
        complexed with gol, nag, so4, zea, zez
      2. 2385483Domain d3cefb2: 3cef B:385-510 [305164]
        Other proteins in same PDB: d3cefa_
        automated match to d4jkxb2
        complexed with gol, nag, so4, zea, zez
    3. Domains for 3d7w:
      1. 2385484Domain d3d7wb1: 3d7w B:249-384 [157434]
        Other proteins in same PDB: d3d7wa_
        automated match to d2rg9b1
        complexed with gol, nag, so4, zea, zez
      2. 2385485Domain d3d7wb2: 3d7w B:385-510 [157435]
        Other proteins in same PDB: d3d7wa_
        automated match to d1sz6b2
        complexed with gol, nag, so4, zea, zez
    4. Domains for 3o5w:
      1. 2385488Domain d3o5wb1: 3o5w B:249-384 [200012]
        Other proteins in same PDB: d3o5wa_
        automated match to d1oqlb1
        complexed with gol, h35, nag, so4
      2. 2385489Domain d3o5wb2: 3o5w B:385-510 [200013]
        Other proteins in same PDB: d3o5wa_
        automated match to d1oqlb2
        complexed with gol, h35, nag, so4
    5. Domains for 4eb2:
      1. 2385478Domain d4eb2b1: 4eb2 B:1-137 [201825]
        Other proteins in same PDB: d4eb2a_
        automated match to d2rg9b1
        complexed with azi, cl, edo, gol, nag, peg, so4
      2. 2385479Domain d4eb2b2: 4eb2 B:138-263 [201826]
        Other proteins in same PDB: d4eb2a_
        automated match to d1sz6b2
        complexed with azi, cl, edo, gol, nag, peg, so4
    6. Domains for 4jkx:
      1. 2385486Domain d4jkxb1: 4jkx B:1-137 [256794]
        Other proteins in same PDB: d4jkxa_
        automated match to d1sz6b1
        complexed with azi, cl, dio, edo, gol, h35, nag, so4
      2. 2385487Domain d4jkxb2: 4jkx B:138-263 [256795]
        Other proteins in same PDB: d4jkxa_
        automated match to d1sz6b2
        complexed with azi, cl, dio, edo, gol, h35, nag, so4
    7. Domains for 6ely:
      1. 3051594Domain d6elyb1: 6ely B:1-137 [351656]
        Other proteins in same PDB: d6elya_
        automated match to d1sz6b1
        complexed with bfw, cl, gla, gly, gol, nag, so4
      2. 3051595Domain d6elyb2: 6ely B:138-263 [351657]
        Other proteins in same PDB: d6elya_
        automated match to d1sz6b2
        complexed with bfw, cl, gla, gly, gol, nag, so4
  4. 2385490Fairy-ring mushroom (Marasmius oreades) [TaxId:181124] [336588] (1 PDB entry)

More info for Protein automated matches from b.42.2.1: Ricin B-like

Timeline for Protein automated matches from b.42.2.1: Ricin B-like: