Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2053108Fold b.42: beta-Trefoil [50352] (8 superfamilies)
    barrel, closed; n=6, S=12; and a hairpin triplet; meander
    duplication: has internal pseudo threefold symmetry
  4. 2053527Superfamily b.42.2: Ricin B-like lectins [50370] (4 families) (S)
  5. 2053528Family b.42.2.1: Ricin B-like [50371] (11 protein domains)
  6. 2053695Protein automated matches [190608] (4 species)
    not a true protein

Species:

  1. 2053696Clostridium botulinum [TaxId:1491] [230685] (7 PDB entries)
    1. Domains for 2e4m:
      1. 2053713Domain d2e4ma1: 2e4m A:2-148 [230686]
        automated match to d1qxma1
      2. 2053714Domain d2e4ma2: 2e4m A:149-286 [230687]
        automated match to d1qxma2
      3. 2053715Domain d2e4mb1: 2e4m B:2-148 [230688]
        automated match to d1qxma1
      4. 2053716Domain d2e4mb2: 2e4m B:149-286 [230689]
        automated match to d1qxma2
    2. Domains for 2ehi:
      1. 2053717Domain d2ehia3: 2ehi A:4-148 [303767]
        Other proteins in same PDB: d2ehib5
        automated match to d2e4ma1
        complexed with sia
      2. 2053718Domain d2ehia4: 2ehi A:149-286 [303768]
        Other proteins in same PDB: d2ehib5
        automated match to d2e4ma2
        complexed with sia
      3. 2053719Domain d2ehib3: 2ehi B:1-148 [303769]
        Other proteins in same PDB: d2ehib5
        automated match to d2e4ma1
        complexed with sia
      4. 2053720Domain d2ehib4: 2ehi B:149-286 [303770]
        Other proteins in same PDB: d2ehib5
        automated match to d2e4ma2
        complexed with sia
    3. Domains for 2ehm:
      1. 2053705Domain d2ehma3: 2ehm A:4-148 [303774]
        automated match to d2e4ma1
        complexed with nga
      2. 2053706Domain d2ehma4: 2ehm A:149-286 [303775]
        automated match to d2e4ma2
        complexed with nga
      3. 2053707Domain d2ehmb3: 2ehm B:4-148 [303776]
        automated match to d2e4ma1
        complexed with nga
      4. 2053708Domain d2ehmb4: 2ehm B:149-286 [303777]
        automated match to d2e4ma2
        complexed with nga
    4. Domains for 2ehn:
      1. 2053709Domain d2ehna3: 2ehn A:4-148 [303778]
        automated match to d2e4ma1
        complexed with gal
      2. 2053710Domain d2ehna4: 2ehn A:149-286 [303779]
        automated match to d2e4ma2
        complexed with gal
      3. 2053711Domain d2ehnb3: 2ehn B:2-148 [303780]
        automated match to d2e4ma1
        complexed with gal
      4. 2053712Domain d2ehnb4: 2ehn B:149-286 [303781]
        automated match to d2e4ma2
        complexed with gal
    5. Domains for 3aj5:
      1. 2053701Domain d3aj5a1: 3aj5 A:4-148 [231795]
        automated match to d1qxma1
        complexed with nga
      2. 2053702Domain d3aj5a2: 3aj5 A:149-286 [231800]
        automated match to d1qxma2
        complexed with nga
      3. 2053703Domain d3aj5b1: 3aj5 B:4-148 [231796]
        automated match to d1qxma1
        complexed with nga
      4. 2053704Domain d3aj5b2: 3aj5 B:149-286 [231801]
        automated match to d1qxma2
        complexed with nga
    6. Domains for 3aj6:
      1. 2053697Domain d3aj6a1: 3aj6 A:4-148 [231797]
        automated match to d1qxma1
        complexed with nga; mutant
      2. 2053698Domain d3aj6a2: 3aj6 A:149-286 [231799]
        automated match to d1qxma2
        complexed with nga; mutant
      3. 2053699Domain d3aj6b1: 3aj6 B:3-148 [231798]
        automated match to d1qxma1
        complexed with nga; mutant
      4. 2053700Domain d3aj6b2: 3aj6 B:149-286 [231802]
        automated match to d1qxma2
        complexed with nga; mutant
    7. Domains for 5b2h:
      1. 2275278Domain d5b2ha1: 5b2h A:3-148 [318579]
        automated match to d2e4ma1
        complexed with pge
      2. 2275279Domain d5b2ha2: 5b2h A:149-285 [318580]
        automated match to d2e4ma2
        complexed with pge
      3. 2275330Domain d5b2hb1: 5b2h B:3-148 [318631]
        automated match to d2e4ma1
        complexed with pge
      4. 2275331Domain d5b2hb2: 5b2h B:149-285 [318632]
        automated match to d2e4ma2
        complexed with pge
  2. 2053721Common earthworm (Lumbricus terrestris) [TaxId:6398] [187630] (3 PDB entries)
    1. Domains for 2dry:
      1. 2053724Domain d2drya_: 2dry A: [163668]
        automated match to d2zqna1
        complexed with pge, so4; mutant
      2. 2053725Domain d2dryb_: 2dry B: [163669]
        automated match to d2zqna1
        complexed with pge, so4; mutant
    2. Domains for 2drz:
      1. 2053726Domain d2drza_: 2drz A: [163670]
        automated match to d2zqna1
        complexed with so4; mutant
      2. 2053727Domain d2drzb_: 2drz B: [163671]
        automated match to d2zqna1
        complexed with so4; mutant
    3. Domains for 2ds0:
      1. 2053722Domain d2ds0a_: 2ds0 A: [163672]
        automated match to d2zqna1
        complexed with so4; mutant
      2. 2053723Domain d2ds0b_: 2ds0 B: [163673]
        automated match to d2zqna1
        complexed with so4; mutant
  3. 2053728European mistletoe (Viscum album) [TaxId:3972] [225471] (6 PDB entries)
    1. Domains for 2rg9:
      1. 2053731Domain d2rg9b1: 2rg9 B:1-137 [152008]
        Other proteins in same PDB: d2rg9a_
        automated match to d2rg9b1
        complexed with azi, cl, gol, nag, so4
      2. 2053732Domain d2rg9b2: 2rg9 B:138-263 [152009]
        Other proteins in same PDB: d2rg9a_
        automated match to d1sz6b2
        complexed with azi, cl, gol, nag, so4
    2. Domains for 3cef:
      1. 2053735Domain d3cefb1: 3cef B:249-384 [305163]
        Other proteins in same PDB: d3cefa_
        automated match to d4jkxb1
        complexed with gol, nag, so4, zea, zez
      2. 2053736Domain d3cefb2: 3cef B:385-510 [305164]
        Other proteins in same PDB: d3cefa_
        automated match to d4jkxb2
        complexed with gol, nag, so4, zea, zez
    3. Domains for 3d7w:
      1. 2053737Domain d3d7wb1: 3d7w B:249-384 [157434]
        Other proteins in same PDB: d3d7wa_
        automated match to d2rg9b1
        complexed with gol, nag, so4, zea, zez
      2. 2053738Domain d3d7wb2: 3d7w B:385-510 [157435]
        Other proteins in same PDB: d3d7wa_
        automated match to d1sz6b2
        complexed with gol, nag, so4, zea, zez
    4. Domains for 3o5w:
      1. 2053733Domain d3o5wb1: 3o5w B:249-384 [200012]
        Other proteins in same PDB: d3o5wa_
        automated match to d1oqlb1
        complexed with gol, h35, nag, so4
      2. 2053734Domain d3o5wb2: 3o5w B:385-510 [200013]
        Other proteins in same PDB: d3o5wa_
        automated match to d1oqlb2
        complexed with gol, h35, nag, so4
    5. Domains for 4eb2:
      1. 2053729Domain d4eb2b1: 4eb2 B:1-137 [201825]
        Other proteins in same PDB: d4eb2a_
        automated match to d2rg9b1
        complexed with azi, cl, edo, gol, nag, peg, so4
      2. 2053730Domain d4eb2b2: 4eb2 B:138-263 [201826]
        Other proteins in same PDB: d4eb2a_
        automated match to d1sz6b2
        complexed with azi, cl, edo, gol, nag, peg, so4
    6. Domains for 4jkx:
      1. 2053739Domain d4jkxb1: 4jkx B:1-137 [256794]
        Other proteins in same PDB: d4jkxa_
        automated match to d1sz6b1
        complexed with azi, cl, dio, edo, gol, h35, nag, so4
      2. 2053740Domain d4jkxb2: 4jkx B:138-263 [256795]
        Other proteins in same PDB: d4jkxa_
        automated match to d1sz6b2
        complexed with azi, cl, dio, edo, gol, h35, nag, so4
  4. 2293287Marasmius oreades [TaxId:181124] [336588] (1 PDB entry)

More info for Protein automated matches from b.42.2.1: Ricin B-like

Timeline for Protein automated matches from b.42.2.1: Ricin B-like: