Class c: Alpha and beta proteins (a/b) [51349] (148 folds) |
Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies) contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678 the first seven superfamilies have similar phosphate-binding sites |
Superfamily c.1.1: Triosephosphate isomerase (TIM) [51351] (2 families) |
Family c.1.1.0: automated matches [191424] (1 protein) not a true family |
Protein automated matches [190605] (25 species) not a true protein |
Bartonella henselae [TaxId:38323] [225801] (1 PDB entry) |
Domain d3kxqa_: 3kxq A: [212579] automated match to d2dp3a_ complexed with edo, no3 |
Domain d3kxqb_: 3kxq B: [212580] automated match to d2dp3a_ complexed with edo, no3 |
Brucella melitensis [TaxId:546272] [229966] (1 PDB entry) |
Domain d4nvta_: 4nvt A: [229968] automated match to d3kxqa_ |
Domain d4nvtb_: 4nvt B: [229967] automated match to d3kxqa_ |
Domain d4nvtc_: 4nvt C: [235830] automated match to d4nvta_ |
Domain d4nvtd_: 4nvt D: [235831] automated match to d4nvta_ |
Burkholderia thailandensis [TaxId:271848] [226422] (1 PDB entry) |
Domain d4g1ka_: 4g1k A: [221658] automated match to d1tmha_ complexed with act, edo, na |
Domain d4g1kb_: 4g1k B: [221659] automated match to d1tmha_ complexed with act, edo, na |
Domain d4g1kc_: 4g1k C: [221660] automated match to d1tmha_ complexed with act, edo, na |
Domain d4g1kd_: 4g1k D: [221661] automated match to d1tmha_ complexed with act, edo, na |
Clostridium perfringens [TaxId:195102] [275078] (1 PDB entry) |
Domain d4y8fa1: 4y8f A:4-251 [275079] Other proteins in same PDB: d4y8fa2 automated match to d3m9ya_ complexed with act, na |
Cryptosporidium parvum [TaxId:353152] [225799] (1 PDB entry) |
Domain d3krsa_: 3krs A: [212525] automated match to d3uwva_ complexed with na, unx |
Domain d3krsb_: 3krs B: [212526] automated match to d3uwva_ complexed with na, unx |
Deinococcus radiodurans [TaxId:243230] [275090] (1 PDB entry) |
Domain d4y90a_: 4y90 A: [275092] automated match to d3uwva_ complexed with ca, gol, na, so4 |
Domain d4y90b_: 4y90 B: [275091] automated match to d3uwva_ complexed with ca, gol, na, so4 |
Domain d4y90c_: 4y90 C: [275093] automated match to d3uwva_ complexed with ca, gol, na, so4 |
Domain d4y90d_: 4y90 D: [275094] automated match to d3uwva_ complexed with ca, gol, na, so4 |
Escherichia coli [TaxId:316385] [226569] (1 PDB entry) |
Domain d4iota_: 4iot A: [223288] automated match to d2vomd_ complexed with so4 |
Domain d4iotb_: 4iot B: [223289] automated match to d2vomd_ complexed with so4 |
Fasciola hepatica [TaxId:6192] [380481] (1 PDB entry) |
Domain d6r8ha_: 6r8h A: [380547] automated match to d1suxa_ complexed with so4 |
Domain d6r8hb_: 6r8h B: [380537] automated match to d1suxa_ complexed with so4 |
Domain d6r8hc_: 6r8h C: [380482] automated match to d1suxa_ complexed with so4 |
Domain d6r8hd_: 6r8h D: [380490] automated match to d1suxa_ complexed with so4 |
Domain d6r8he_: 6r8h E: [380518] automated match to d1suxa_ complexed with so4 |
Domain d6r8hf_: 6r8h F: [380517] automated match to d1suxa_ complexed with so4 |
Francisella tularensis [TaxId:177416] [329594] (1 PDB entry) |
Domain d5ujwa_: 5ujw A: [329595] automated match to d4bi7a_ complexed with 13p, cit, edo, ipa |
Domain d5ujwb_: 5ujw B: [329630] automated match to d4bi7a_ complexed with 13p, cit, edo, ipa |
Domain d5ujwc_: 5ujw C: [329603] automated match to d4bi7a_ complexed with 13p, cit, edo, ipa |
Domain d5ujwd_: 5ujw D: [329613] automated match to d4bi7a_ complexed with 13p, cit, edo, ipa |
Domain d5ujwe_: 5ujw E: [329660] automated match to d4bi7a_ complexed with 13p, cit, edo, ipa |
Domain d5ujwf_: 5ujw F: [329602] automated match to d4bi7a_ complexed with 13p, cit, edo, ipa |
Giardia intestinalis [TaxId:5741] [187625] (8 PDB entries) |
Domain d2dp3a_: 2dp3 A: [163648] automated match to d1i45a_ complexed with so4; mutant |
Domain d2yc6a_: 2yc6 A: [304710] automated match to d4bi7a_ complexed with pga; mutant |
Domain d2yc7a_: 2yc7 A: [304711] automated match to d4bi7a_ complexed with pga, so4; mutant |
Domain d2yc8a_: 2yc8 A: [304712] automated match to d4bi5f_ mutant |
Domain d2yc8b_: 2yc8 B: [304713] automated match to d4bi5f_ mutant |
Domain d2yc8c_: 2yc8 C: [304714] automated match to d4bi5f_ mutant |
Domain d2yc8d_: 2yc8 D: [304715] automated match to d4bi5f_ mutant |
Domain d2yc8e_: 2yc8 E: [304716] automated match to d4bi5f_ mutant |
Domain d2yc8f_: 2yc8 F: [304717] automated match to d4bi5f_ mutant |
Domain d2yc8g_: 2yc8 G: [304718] automated match to d4bi5f_ mutant |
Domain d2yc8h_: 2yc8 H: [304719] automated match to d4bi5f_ mutant |
Domain d2yc8i_: 2yc8 I: [304720] automated match to d4bi5f_ mutant |
Domain d2yc8j_: 2yc8 J: [304721] automated match to d4bi5f_ mutant |
Domain d2yc8k_: 2yc8 K: [304722] automated match to d4bi5f_ mutant |
Domain d2yc8l_: 2yc8 L: [304723] automated match to d4bi5f_ mutant |
Domain d2yc8m_: 2yc8 M: [304724] automated match to d4bi5f_ mutant |
Domain d2yc8n_: 2yc8 N: [304725] automated match to d4bi5f_ mutant |
Domain d2yc8o_: 2yc8 O: [304726] automated match to d4bi5f_ mutant |
Domain d2yc8p_: 2yc8 P: [304727] automated match to d4bi5f_ mutant |
Domain d2yc8q_: 2yc8 Q: [304728] automated match to d4bi5f_ mutant |
Domain d2yc8r_: 2yc8 R: [304729] automated match to d4bi5f_ mutant |
Domain d2yc8s_: 2yc8 S: [304730] automated match to d4bi5f_ mutant |
Domain d2yc8t_: 2yc8 T: [304731] automated match to d4bi5f_ mutant |
Domain d3pf3a_: 3pf3 A: [183691] automated match to d1i45a_ complexed with ca, gol, so4; mutant |
Domain d4bi5a_: 4bi5 A: [197226] automated match to d2yc8r_ mutant |
Domain d4bi5b_: 4bi5 B: [197227] automated match to d2yc8r_ mutant |
Domain d4bi5c_: 4bi5 C: [197228] automated match to d2yc8r_ mutant |
Domain d4bi5d_: 4bi5 D: [197229] automated match to d2yc8r_ mutant |
Domain d4bi5e_: 4bi5 E: [197230] automated match to d2yc8r_ mutant |
Domain d4bi5f_: 4bi5 F: [201625] mutant |
Domain d4bi5g_: 4bi5 G: [201626] mutant |
Domain d4bi5h_: 4bi5 H: [201627] mutant |
Domain d4bi5i_: 4bi5 I: [201628] mutant |
Domain d4bi5j_: 4bi5 J: [201629] mutant |
Domain d4bi5k_: 4bi5 K: [201630] mutant |
Domain d4bi5l_: 4bi5 L: [201631] mutant |
Domain d4bi5m_: 4bi5 M: [201632] mutant |
Domain d4bi5n_: 4bi5 N: [201633] mutant |
Domain d4bi5o_: 4bi5 O: [201634] mutant |
Domain d4bi5p_: 4bi5 P: [201635] mutant |
Domain d4bi5q_: 4bi5 Q: [201636] mutant |
Domain d4bi5r_: 4bi5 R: [201637] mutant |
Domain d4bi5s_: 4bi5 S: [201638] mutant |
Domain d4bi5t_: 4bi5 T: [201639] mutant |
Domain d4bi6a_: 4bi6 A: [197148] automated match to d3pf3a_ complexed with pga; mutant |
Domain d4bi7a_: 4bi7 A: [197149] automated match to d3pf3a_ complexed with pga, so4; mutant |
Green alga (Chlamydomonas reinhardtii) [TaxId:3055] [230267] (1 PDB entry) |
Domain d4mkna_: 4mkn A: [230268] automated match to d4ff7a_ complexed with mpd, mrd |
Helicobacter pylori [TaxId:85962] [225412] (1 PDB entry) |
Domain d2jgqa_: 2jgq A: [205037] automated match to d2vxna_ complexed with po4, qga |
Domain d2jgqb_: 2jgq B: [205038] automated match to d2vxna_ complexed with po4, qga |
Leishmania sp. [TaxId:438838] [227847] (1 PDB entry) |
Domain d4gnja_: 4gnj A: [227848] automated match to d4ff7a_ complexed with ars, na |
Domain d4gnjb_: 4gnj B: [227849] automated match to d4ff7a_ complexed with ars, na |
Leptospira interrogans [TaxId:1291351] [311763] (2 PDB entries) |
Domain d4x22a_: 4x22 A: [311764] automated match to d3uwub_ complexed with edo, pg0 |
Domain d4ymza_: 4ymz A: [312129] automated match to d3uwub_ complexed with 13p, edo, so4 |
Domain d4ymzb_: 4ymz B: [312198] automated match to d3uwub_ complexed with 13p, edo, so4 |
Mycobacterium tuberculosis [TaxId:1773] [225650] (1 PDB entry) |
Domain d3gvga_: 3gvg A: [210665] automated match to d3ta6b_ complexed with gol |
Domain d3gvgb_: 3gvg B: [210666] automated match to d3ta6b_ complexed with gol |
Mycobacterium tuberculosis [TaxId:83332] [189828] (2 PDB entries) |
Domain d3ta6a_: 3ta6 A: [185739] automated match to d1b9bb_ complexed with flc |
Domain d3ta6b_: 3ta6 B: [185740] automated match to d1b9bb_ complexed with flc |
Domain d3taoa_: 3tao A: [185742] automated match to d1b9bb_ complexed with pgh |
Domain d3taob_: 3tao B: [185743] automated match to d1b9bb_ complexed with pgh |
Streptomyces coelicolor [TaxId:100226] [275080] (1 PDB entry) |
Domain d4y9aa_: 4y9a A: [275081] automated match to d2y6za_ |
Domain d4y9ab_: 4y9a B: [275084] automated match to d2y6za_ |
Domain d4y9ac_: 4y9a C: [275083] automated match to d2y6za_ |
Domain d4y9ad_: 4y9a D: [275082] automated match to d2y6za_ |
Synechocystis sp. [TaxId:1111708] [361356] (1 PDB entry) |
Domain d6bvea_: 6bve A: [361369] automated match to d4y9ab_ complexed with na, pga |
Domain d6bveb_: 6bve B: [361357] automated match to d4y9ab_ complexed with na, pga |
Taenia solium [TaxId:6204] [378897] (1 PDB entry) |
Domain d6ooga1: 6oog A:1-250 [378898] Other proteins in same PDB: d6ooga2 automated match to d1b9bb_ complexed with na, pga |
Thale cress (Arabidopsis thaliana) [TaxId:3702] [268515] (8 PDB entries) |
Domain d4obta1: 4obt A:3-251 [280464] Other proteins in same PDB: d4obta2, d4obtb2 automated match to d1tmha_ |
Domain d4obtb1: 4obt B:3-251 [280463] Other proteins in same PDB: d4obta2, d4obtb2 automated match to d1tmha_ |
Domain d4ohqa_: 4ohq A: [268520] automated match to d1m6ja_ |
Domain d4ohqb_: 4ohq B: [268516] automated match to d1m6ja_ |
Domain d6nxqa1: 6nxq A:3-250 [380775] Other proteins in same PDB: d6nxqa2 automated match to d1tmha_ complexed with na; mutant |
Domain d6nxra1: 6nxr A:3-249 [380760] Other proteins in same PDB: d6nxra2 automated match to d1tmha_ complexed with gol, na; mutant |
Domain d6nxsa1: 6nxs A:3-250 [380422] Other proteins in same PDB: d6nxsa2, d6nxsb2 automated match to d1tmha_ complexed with na; mutant |
Domain d6nxsb1: 6nxs B:3-249 [380424] Other proteins in same PDB: d6nxsa2, d6nxsb2 automated match to d1tmha_ complexed with na; mutant |
Domain d6nxwa1: 6nxw A:3-251 [380754] Other proteins in same PDB: d6nxwa2, d6nxwb2, d6nxwc2 automated match to d1tmha_ mutant |
Domain d6nxwb1: 6nxw B:3-251 [380779] Other proteins in same PDB: d6nxwa2, d6nxwb2, d6nxwc2 automated match to d1tmha_ mutant |
Domain d6nxwc1: 6nxw C:1-251 [380726] Other proteins in same PDB: d6nxwa2, d6nxwb2, d6nxwc2 automated match to d1tmha_ mutant |
Domain d6nxwd_: 6nxw D: [380794] Other proteins in same PDB: d6nxwa2, d6nxwb2, d6nxwc2 automated match to d1tmha_ mutant |
Domain d6nxxa_: 6nxx A: [380766] automated match to d1tmha_ complexed with na; mutant |
Domain d6nxxb_: 6nxx B: [380759] automated match to d1tmha_ complexed with na; mutant |
Domain d6nxya_: 6nxy A: [380778] automated match to d1tmha_ complexed with na; mutant |
Thermoplasma acidophilum [TaxId:273075] [318086] (2 PDB entries) |
Domain d5csra_: 5csr A: [318107] Other proteins in same PDB: d5csrc2, d5csrd2 automated match to d2h6ra_ complexed with cl, gol |
Domain d5csrb_: 5csr B: [318128] Other proteins in same PDB: d5csrc2, d5csrd2 automated match to d2h6ra_ complexed with cl, gol |
Domain d5csrc1: 5csr C:1-216 [318098] Other proteins in same PDB: d5csrc2, d5csrd2 automated match to d2h6ra_ complexed with cl, gol |
Domain d5csrd1: 5csr D:1-216 [318126] Other proteins in same PDB: d5csrc2, d5csrd2 automated match to d2h6ra_ complexed with cl, gol |
Domain d5cssa_: 5css A: [318088] automated match to d2h6ra_ complexed with cl, g3p |
Domain d5cssb_: 5css B: [318087] automated match to d2h6ra_ complexed with cl, g3p |
Domain d5cssc_: 5css C: [318129] automated match to d2h6ra_ complexed with cl, g3p |
Domain d5cssd_: 5css D: [318116] automated match to d2h6ra_ complexed with cl, g3p |
Toxoplasma gondii [TaxId:508771] [330219] (1 PDB entry) |
Domain d5upra_: 5upr A: [330220] automated match to d1m6ja_ complexed with cl, so4 |
Domain d5uprb_: 5upr B: [330230] automated match to d1m6ja_ complexed with cl, so4 |
Domain d5uprc_: 5upr C: [330293] automated match to d1m6ja_ complexed with cl, so4 |
Domain d5uprd_: 5upr D: [330231] automated match to d1m6ja_ complexed with cl, so4 |
Trichomonas vaginalis [TaxId:5722] [195009] (12 PDB entries) |
Domain d3qsra_: 3qsr A: [195011] automated match to d1sw3a_ complexed with na |
Domain d3qsta_: 3qst A: [195010] automated match to d1sw3a_ complexed with na |
Domain d4o4va_: 4o4v A: [268449] automated match to d3qsra_ complexed with na |
Domain d4o4wa_: 4o4w A: [268451] automated match to d3qsra_ complexed with na; mutant |
Domain d4o50a_: 4o50 A: [268462] automated match to d3qsra_ complexed with na; mutant |
Domain d4o52a_: 4o52 A: [268463] automated match to d3qsra_ complexed with na; mutant |
Domain d4o53a_: 4o53 A: [268459] automated match to d3qsra_ complexed with na; mutant |
Domain d4o54a_: 4o54 A: [268464] automated match to d3qsra_ complexed with na; mutant |
Domain d4o57a_: 4o57 A: [268465] automated match to d3qsra_ complexed with na; mutant |
Domain d4rcxa_: 4rcx A: [277546] automated match to d3qsra_ complexed with na |
Domain d4wjea_: 4wje A: [278427] automated match to d3qsta_ complexed with na |
Domain d5vwna_: 5vwn A: [348051] automated match to d4rcxa_ complexed with na |
Trypanosoma cruzi [TaxId:5693] [228042] (2 PDB entries) |
Domain d4hhpa_: 4hhp A: [234648] automated match to d4hhpb_ complexed with gol, so4; mutant |
Domain d4hhpb_: 4hhp B: [228302] automated match to d4ff7a_ complexed with gol, so4; mutant |
Domain d4jeqa_: 4jeq A: [234974] automated match to d4jeqf_ complexed with peg, so4 |
Domain d4jeqb_: 4jeq B: [234973] automated match to d4jeqf_ complexed with peg, so4 |
Domain d4jeqc_: 4jeq C: [234976] automated match to d4jeqf_ complexed with peg, so4 |
Domain d4jeqd_: 4jeq D: [234975] automated match to d4jeqf_ complexed with peg, so4 |
Domain d4jeqe_: 4jeq E: [228044] automated match to d4ff7a_ complexed with peg, so4 |
Domain d4jeqf_: 4jeq F: [228043] automated match to d4ff7a_ complexed with peg, so4 |
Domain d4jeqg_: 4jeq G: [234980] automated match to d4jeqf_ complexed with peg, so4 |
Domain d4jeqh_: 4jeq H: [234979] automated match to d4jeqf_ complexed with peg, so4 |
Domain d4jeqi_: 4jeq I: [234978] automated match to d4jeqf_ complexed with peg, so4 |
Domain d4jeqj_: 4jeq J: [234981] automated match to d4jeqf_ complexed with peg, so4 |
Domain d4jeqk_: 4jeq K: [234982] automated match to d4jeqf_ complexed with peg, so4 |
Domain d4jeql_: 4jeq L: [234983] automated match to d4jeqf_ complexed with peg, so4 |
Zea mays [TaxId:4577] [358451] (1 PDB entry) |
Domain d6cg9a_: 6cg9 A: [358452] Other proteins in same PDB: d6cg9b2 automated match to d4mkna_ complexed with act, gol |
Domain d6cg9b1: 6cg9 B:4-254 [358467] Other proteins in same PDB: d6cg9b2 automated match to d4mkna_ complexed with act, gol |
Timeline for Protein automated matches from c.1.1.0: automated matches: