Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2089713Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2089714Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 2089715Superfamily c.1.1: Triosephosphate isomerase (TIM) [51351] (2 families) (S)
  5. 2090118Family c.1.1.0: automated matches [191424] (1 protein)
    not a true family
  6. 2090119Protein automated matches [190605] (21 species)
    not a true protein

Species:

  1. 2090120Bartonella henselae [TaxId:38323] [225801] (1 PDB entry)
  2. 2090123Brucella melitensis [TaxId:546272] [229966] (1 PDB entry)
  3. 2090128Burkholderia thailandensis [TaxId:271848] [226422] (1 PDB entry)
  4. 2090133Clostridium perfringens [TaxId:195102] [275078] (1 PDB entry)
  5. 2090135Cryptosporidium parvum [TaxId:353152] [225799] (1 PDB entry)
  6. 2090138Deinococcus radiodurans [TaxId:243230] [275090] (1 PDB entry)
  7. 2090143Escherichia coli [TaxId:316385] [226569] (1 PDB entry)
  8. 2090146Francisella tularensis [TaxId:177416] [329594] (1 PDB entry)
  9. 2090153Giardia intestinalis [TaxId:5741] [187625] (8 PDB entries)
    1. Domain for 2dp3:
    2. Domain for 2yc6:
    3. Domain for 2yc7:
    4. Domains for 2yc8:
      1. 2090180Domain d2yc8a_: 2yc8 A: [304712]
        automated match to d4bi5f_
        mutant
      2. 2090181Domain d2yc8b_: 2yc8 B: [304713]
        automated match to d4bi5f_
        mutant
      3. 2090182Domain d2yc8c_: 2yc8 C: [304714]
        automated match to d4bi5f_
        mutant
      4. 2090183Domain d2yc8d_: 2yc8 D: [304715]
        automated match to d4bi5f_
        mutant
      5. 2090184Domain d2yc8e_: 2yc8 E: [304716]
        automated match to d4bi5f_
        mutant
      6. 2090185Domain d2yc8f_: 2yc8 F: [304717]
        automated match to d4bi5f_
        mutant
      7. 2090186Domain d2yc8g_: 2yc8 G: [304718]
        automated match to d4bi5f_
        mutant
      8. 2090187Domain d2yc8h_: 2yc8 H: [304719]
        automated match to d4bi5f_
        mutant
      9. 2090188Domain d2yc8i_: 2yc8 I: [304720]
        automated match to d4bi5f_
        mutant
      10. 2090189Domain d2yc8j_: 2yc8 J: [304721]
        automated match to d4bi5f_
        mutant
      11. 2090190Domain d2yc8k_: 2yc8 K: [304722]
        automated match to d4bi5f_
        mutant
      12. 2090191Domain d2yc8l_: 2yc8 L: [304723]
        automated match to d4bi5f_
        mutant
      13. 2090192Domain d2yc8m_: 2yc8 M: [304724]
        automated match to d4bi5f_
        mutant
      14. 2090193Domain d2yc8n_: 2yc8 N: [304725]
        automated match to d4bi5f_
        mutant
      15. 2090194Domain d2yc8o_: 2yc8 O: [304726]
        automated match to d4bi5f_
        mutant
      16. 2090195Domain d2yc8p_: 2yc8 P: [304727]
        automated match to d4bi5f_
        mutant
      17. 2090196Domain d2yc8q_: 2yc8 Q: [304728]
        automated match to d4bi5f_
        mutant
      18. 2090197Domain d2yc8r_: 2yc8 R: [304729]
        automated match to d4bi5f_
        mutant
      19. 2090198Domain d2yc8s_: 2yc8 S: [304730]
        automated match to d4bi5f_
        mutant
      20. 2090199Domain d2yc8t_: 2yc8 T: [304731]
        automated match to d4bi5f_
        mutant
    5. Domain for 3pf3:
    6. Domains for 4bi5:
      1. 2090160Domain d4bi5a_: 4bi5 A: [197226]
        automated match to d2yc8r_
        mutant
      2. 2090161Domain d4bi5b_: 4bi5 B: [197227]
        automated match to d2yc8r_
        mutant
      3. 2090162Domain d4bi5c_: 4bi5 C: [197228]
        automated match to d2yc8r_
        mutant
      4. 2090163Domain d4bi5d_: 4bi5 D: [197229]
        automated match to d2yc8r_
        mutant
      5. 2090164Domain d4bi5e_: 4bi5 E: [197230]
        automated match to d2yc8r_
        mutant
      6. 2090165Domain d4bi5f_: 4bi5 F: [201625]
        mutant
      7. 2090166Domain d4bi5g_: 4bi5 G: [201626]
        mutant
      8. 2090167Domain d4bi5h_: 4bi5 H: [201627]
        mutant
      9. 2090168Domain d4bi5i_: 4bi5 I: [201628]
        mutant
      10. 2090169Domain d4bi5j_: 4bi5 J: [201629]
        mutant
      11. 2090170Domain d4bi5k_: 4bi5 K: [201630]
        mutant
      12. 2090171Domain d4bi5l_: 4bi5 L: [201631]
        mutant
      13. 2090172Domain d4bi5m_: 4bi5 M: [201632]
        mutant
      14. 2090173Domain d4bi5n_: 4bi5 N: [201633]
        mutant
      15. 2090174Domain d4bi5o_: 4bi5 O: [201634]
        mutant
      16. 2090175Domain d4bi5p_: 4bi5 P: [201635]
        mutant
      17. 2090176Domain d4bi5q_: 4bi5 Q: [201636]
        mutant
      18. 2090177Domain d4bi5r_: 4bi5 R: [201637]
        mutant
      19. 2090178Domain d4bi5s_: 4bi5 S: [201638]
        mutant
      20. 2090179Domain d4bi5t_: 4bi5 T: [201639]
        mutant
    7. Domain for 4bi6:
    8. Domain for 4bi7:
  10. 2090200Green alga (Chlamydomonas reinhardtii) [TaxId:3055] [230267] (1 PDB entry)
  11. 2090202Helicobacter pylori [TaxId:85962] [225412] (1 PDB entry)
  12. 2090205Leishmania sp. [TaxId:438838] [227847] (1 PDB entry)
  13. 2090208Leptospira interrogans [TaxId:1291351] [311763] (2 PDB entries)
    1. Domain for 4x22:
    2. Domains for 4ymz:
      1. 2090209Domain d4ymza_: 4ymz A: [312129]
        automated match to d3uwub_
        complexed with 13p, edo, so4
      2. 2090210Domain d4ymzb_: 4ymz B: [312198]
        automated match to d3uwub_
        complexed with 13p, edo, so4
  14. 2090212Mycobacterium tuberculosis [TaxId:1773] [225650] (1 PDB entry)
  15. 2090215Mycobacterium tuberculosis [TaxId:83332] [189828] (2 PDB entries)
    1. Domains for 3ta6:
      1. 2090216Domain d3ta6a_: 3ta6 A: [185739]
        automated match to d1b9bb_
        complexed with flc
      2. 2090217Domain d3ta6b_: 3ta6 B: [185740]
        automated match to d1b9bb_
        complexed with flc
    2. Domains for 3tao:
      1. 2090218Domain d3taoa_: 3tao A: [185742]
        automated match to d1b9bb_
        complexed with pgh
      2. 2090219Domain d3taob_: 3tao B: [185743]
        automated match to d1b9bb_
        complexed with pgh
  16. 2090220Streptomyces coelicolor [TaxId:100226] [275080] (1 PDB entry)
  17. 2090225Thale cress (Arabidopsis thaliana) [TaxId:3702] [268515] (2 PDB entries)
    1. Domains for 4obt:
      1. 2090226Domain d4obta_: 4obt A: [280464]
        automated match to d1tmha_
      2. 2090227Domain d4obtb_: 4obt B: [280463]
        automated match to d1tmha_
    2. Domains for 4ohq:
      1. 2090228Domain d4ohqa_: 4ohq A: [268520]
        automated match to d1m6ja_
      2. 2090229Domain d4ohqb_: 4ohq B: [268516]
        automated match to d1m6ja_
  18. 2090230Thermoplasma acidophilum [TaxId:273075] [318086] (2 PDB entries)
    1. Domains for 5csr:
      1. 2090231Domain d5csra_: 5csr A: [318107]
        Other proteins in same PDB: d5csrc2, d5csrd2
        automated match to d2h6ra_
        complexed with cl, gol
      2. 2090232Domain d5csrb_: 5csr B: [318128]
        Other proteins in same PDB: d5csrc2, d5csrd2
        automated match to d2h6ra_
        complexed with cl, gol
      3. 2090233Domain d5csrc1: 5csr C:1-216 [318098]
        Other proteins in same PDB: d5csrc2, d5csrd2
        automated match to d2h6ra_
        complexed with cl, gol
      4. 2090234Domain d5csrd1: 5csr D:1-216 [318126]
        Other proteins in same PDB: d5csrc2, d5csrd2
        automated match to d2h6ra_
        complexed with cl, gol
    2. Domains for 5css:
      1. 2090235Domain d5cssa_: 5css A: [318088]
        automated match to d2h6ra_
        complexed with cl, g3p
      2. 2090236Domain d5cssb_: 5css B: [318087]
        automated match to d2h6ra_
        complexed with cl, g3p
      3. 2090237Domain d5cssc_: 5css C: [318129]
        automated match to d2h6ra_
        complexed with cl, g3p
      4. 2090238Domain d5cssd_: 5css D: [318116]
        automated match to d2h6ra_
        complexed with cl, g3p
  19. 2090239Toxoplasma gondii [TaxId:508771] [330219] (1 PDB entry)
  20. 2090244Trichomonas vaginalis [TaxId:5722] [195009] (11 PDB entries)
    1. Domain for 3qsr:
    2. Domain for 3qst:
    3. Domain for 4o4v:
    4. Domain for 4o4w:
    5. Domain for 4o50:
    6. Domain for 4o52:
    7. Domain for 4o53:
    8. Domain for 4o54:
    9. Domain for 4o57:
    10. Domain for 4rcx:
    11. Domain for 4wje:
  21. 2090256Trypanosoma cruzi [TaxId:5693] [228042] (2 PDB entries)
    1. Domains for 4hhp:
      1. 2090257Domain d4hhpa_: 4hhp A: [234648]
        automated match to d4hhpb_
        complexed with gol, so4; mutant
      2. 2090258Domain d4hhpb_: 4hhp B: [228302]
        automated match to d4ff7a_
        complexed with gol, so4; mutant
    2. Domains for 4jeq:
      1. 2090259Domain d4jeqa_: 4jeq A: [234974]
        automated match to d4jeqf_
        complexed with peg, so4
      2. 2090260Domain d4jeqb_: 4jeq B: [234973]
        automated match to d4jeqf_
        complexed with peg, so4
      3. 2090261Domain d4jeqc_: 4jeq C: [234976]
        automated match to d4jeqf_
        complexed with peg, so4
      4. 2090262Domain d4jeqd_: 4jeq D: [234975]
        automated match to d4jeqf_
        complexed with peg, so4
      5. 2090263Domain d4jeqe_: 4jeq E: [228044]
        automated match to d4ff7a_
        complexed with peg, so4
      6. 2090264Domain d4jeqf_: 4jeq F: [228043]
        automated match to d4ff7a_
        complexed with peg, so4
      7. 2090265Domain d4jeqg_: 4jeq G: [234980]
        automated match to d4jeqf_
        complexed with peg, so4
      8. 2090266Domain d4jeqh_: 4jeq H: [234979]
        automated match to d4jeqf_
        complexed with peg, so4
      9. 2090267Domain d4jeqi_: 4jeq I: [234978]
        automated match to d4jeqf_
        complexed with peg, so4
      10. 2090268Domain d4jeqj_: 4jeq J: [234981]
        automated match to d4jeqf_
        complexed with peg, so4
      11. 2090269Domain d4jeqk_: 4jeq K: [234982]
        automated match to d4jeqf_
        complexed with peg, so4
      12. 2090270Domain d4jeql_: 4jeq L: [234983]
        automated match to d4jeqf_
        complexed with peg, so4

More info for Protein automated matches from c.1.1.0: automated matches

Timeline for Protein automated matches from c.1.1.0: automated matches: