Lineage for Protein: automated matches

  1. Root: SCOPe 2.04
  2. 1565955Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 1565956Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 1565957Superfamily c.1.1: Triosephosphate isomerase (TIM) [51351] (2 families) (S)
  5. 1566289Family c.1.1.0: automated matches [191424] (1 protein)
    not a true family
  6. 1566290Protein automated matches [190605] (13 species)
    not a true protein

Species:

  1. 1566291Bartonella henselae [TaxId:38323] [225801] (1 PDB entry)
  2. 1566294Brucella melitensis [TaxId:546272] [229966] (1 PDB entry)
  3. 1566299Burkholderia thailandensis [TaxId:271848] [226422] (1 PDB entry)
  4. 1566304Cryptosporidium parvum [TaxId:353152] [225799] (1 PDB entry)
  5. 1566307Escherichia coli [TaxId:316385] [226569] (1 PDB entry)
  6. 1566310Giardia intestinalis [TaxId:5741] [187625] (5 PDB entries)
    1. Domain for 2dp3:
    2. Domain for 3pf3:
    3. Domains for 4bi5:
      1. 1566315Domain d4bi5a_: 4bi5 A: [197226]
        automated match to d2yc8r_
        mutant
      2. 1566316Domain d4bi5b_: 4bi5 B: [197227]
        automated match to d2yc8r_
        mutant
      3. 1566317Domain d4bi5c_: 4bi5 C: [197228]
        automated match to d2yc8r_
        mutant
      4. 1566318Domain d4bi5d_: 4bi5 D: [197229]
        automated match to d2yc8r_
        mutant
      5. 1566319Domain d4bi5e_: 4bi5 E: [197230]
        automated match to d2yc8r_
        mutant
      6. 1566320Domain d4bi5f_: 4bi5 F: [201625]
        mutant
      7. 1566321Domain d4bi5g_: 4bi5 G: [201626]
        mutant
      8. 1566322Domain d4bi5h_: 4bi5 H: [201627]
        mutant
      9. 1566323Domain d4bi5i_: 4bi5 I: [201628]
        mutant
      10. 1566324Domain d4bi5j_: 4bi5 J: [201629]
        mutant
      11. 1566325Domain d4bi5k_: 4bi5 K: [201630]
        mutant
      12. 1566326Domain d4bi5l_: 4bi5 L: [201631]
        mutant
      13. 1566327Domain d4bi5m_: 4bi5 M: [201632]
        mutant
      14. 1566328Domain d4bi5n_: 4bi5 N: [201633]
        mutant
      15. 1566329Domain d4bi5o_: 4bi5 O: [201634]
        mutant
      16. 1566330Domain d4bi5p_: 4bi5 P: [201635]
        mutant
      17. 1566331Domain d4bi5q_: 4bi5 Q: [201636]
        mutant
      18. 1566332Domain d4bi5r_: 4bi5 R: [201637]
        mutant
      19. 1566333Domain d4bi5s_: 4bi5 S: [201638]
        mutant
      20. 1566334Domain d4bi5t_: 4bi5 T: [201639]
        mutant
    4. Domain for 4bi6:
    5. Domain for 4bi7:
  7. 1566335Green alga (Chlamydomonas reinhardtii) [TaxId:3055] [230267] (1 PDB entry)
  8. 1566337Helicobacter pylori [TaxId:85962] [225412] (1 PDB entry)
  9. 1566340Leishmania sp. [TaxId:438838] [227847] (1 PDB entry)
  10. 1566343Mycobacterium tuberculosis [TaxId:1773] [225650] (1 PDB entry)
  11. 1566346Mycobacterium tuberculosis [TaxId:83332] [189828] (2 PDB entries)
    1. Domains for 3ta6:
      1. 1566347Domain d3ta6a_: 3ta6 A: [185739]
        automated match to d1b9bb_
        complexed with flc
      2. 1566348Domain d3ta6b_: 3ta6 B: [185740]
        automated match to d1b9bb_
        complexed with flc
    2. Domains for 3tao:
      1. 1566349Domain d3taoa_: 3tao A: [185742]
        automated match to d1b9bb_
        complexed with pgh
      2. 1566350Domain d3taob_: 3tao B: [185743]
        automated match to d1b9bb_
        complexed with pgh
  12. 1566351Trichomonas vaginalis [TaxId:5722] [195009] (2 PDB entries)
    1. Domain for 3qsr:
    2. Domain for 3qst:
  13. 1566354Trypanosoma cruzi [TaxId:5693] [228042] (2 PDB entries)
    1. Domains for 4hhp:
      1. 1566355Domain d4hhpa_: 4hhp A: [234648]
        automated match to d4hhpb_
        complexed with gol, so4; mutant
      2. 1566356Domain d4hhpb_: 4hhp B: [228302]
        automated match to d4ff7a_
        complexed with gol, so4; mutant
    2. Domains for 4jeq:
      1. 1566357Domain d4jeqa_: 4jeq A: [234974]
        automated match to d4jeqf_
        complexed with peg, so4
      2. 1566358Domain d4jeqb_: 4jeq B: [234973]
        automated match to d4jeqf_
        complexed with peg, so4
      3. 1566359Domain d4jeqc_: 4jeq C: [234976]
        automated match to d4jeqf_
        complexed with peg, so4
      4. 1566360Domain d4jeqd_: 4jeq D: [234975]
        automated match to d4jeqf_
        complexed with peg, so4
      5. 1566361Domain d4jeqe_: 4jeq E: [228044]
        automated match to d4ff7a_
        complexed with peg, so4
      6. 1566362Domain d4jeqf_: 4jeq F: [228043]
        automated match to d4ff7a_
        complexed with peg, so4
      7. 1566363Domain d4jeqg_: 4jeq G: [234980]
        automated match to d4jeqf_
        complexed with peg, so4
      8. 1566364Domain d4jeqh_: 4jeq H: [234979]
        automated match to d4jeqf_
        complexed with peg, so4
      9. 1566365Domain d4jeqi_: 4jeq I: [234978]
        automated match to d4jeqf_
        complexed with peg, so4
      10. 1566366Domain d4jeqj_: 4jeq J: [234981]
        automated match to d4jeqf_
        complexed with peg, so4
      11. 1566367Domain d4jeqk_: 4jeq K: [234982]
        automated match to d4jeqf_
        complexed with peg, so4
      12. 1566368Domain d4jeql_: 4jeq L: [234983]
        automated match to d4jeqf_
        complexed with peg, so4

More info for Protein automated matches from c.1.1.0: automated matches

Timeline for Protein automated matches from c.1.1.0: automated matches: