Lineage for Protein: automated matches

  1. Root: SCOPe 2.08
  2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. Fold c.1: TIM beta/alpha-barrel [51350] (34 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. Superfamily c.1.1: Triosephosphate isomerase (TIM) [51351] (2 families) (S)
  5. Family c.1.1.0: automated matches [191424] (1 protein)
    not a true family
  6. Protein automated matches [190605] (25 species)
    not a true protein

Species:

  1. Bartonella henselae [TaxId:38323] [225801] (1 PDB entry)
  2. Brucella melitensis [TaxId:546272] [229966] (1 PDB entry)
  3. Burkholderia thailandensis [TaxId:271848] [226422] (1 PDB entry)
  4. Clostridium perfringens [TaxId:195102] [275078] (1 PDB entry)
  5. Cryptosporidium parvum [TaxId:353152] [225799] (1 PDB entry)
  6. Deinococcus radiodurans [TaxId:243230] [275090] (1 PDB entry)
  7. Escherichia coli [TaxId:316385] [226569] (1 PDB entry)
  8. Fasciola hepatica [TaxId:6192] [380481] (1 PDB entry)
  9. Francisella tularensis [TaxId:177416] [329594] (1 PDB entry)
  10. Giardia intestinalis [TaxId:5741] [187625] (8 PDB entries)
    1. Domain for 2dp3:
    2. Domain for 2yc6:
    3. Domain for 2yc7:
    4. Domains for 2yc8:
      1. Domain d2yc8a_: 2yc8 A: [304712]
        automated match to d4bi5f_
        mutant
      2. Domain d2yc8b_: 2yc8 B: [304713]
        automated match to d4bi5f_
        mutant
      3. Domain d2yc8c_: 2yc8 C: [304714]
        automated match to d4bi5f_
        mutant
      4. Domain d2yc8d_: 2yc8 D: [304715]
        automated match to d4bi5f_
        mutant
      5. Domain d2yc8e_: 2yc8 E: [304716]
        automated match to d4bi5f_
        mutant
      6. Domain d2yc8f_: 2yc8 F: [304717]
        automated match to d4bi5f_
        mutant
      7. Domain d2yc8g_: 2yc8 G: [304718]
        automated match to d4bi5f_
        mutant
      8. Domain d2yc8h_: 2yc8 H: [304719]
        automated match to d4bi5f_
        mutant
      9. Domain d2yc8i_: 2yc8 I: [304720]
        automated match to d4bi5f_
        mutant
      10. Domain d2yc8j_: 2yc8 J: [304721]
        automated match to d4bi5f_
        mutant
      11. Domain d2yc8k_: 2yc8 K: [304722]
        automated match to d4bi5f_
        mutant
      12. Domain d2yc8l_: 2yc8 L: [304723]
        automated match to d4bi5f_
        mutant
      13. Domain d2yc8m_: 2yc8 M: [304724]
        automated match to d4bi5f_
        mutant
      14. Domain d2yc8n_: 2yc8 N: [304725]
        automated match to d4bi5f_
        mutant
      15. Domain d2yc8o_: 2yc8 O: [304726]
        automated match to d4bi5f_
        mutant
      16. Domain d2yc8p_: 2yc8 P: [304727]
        automated match to d4bi5f_
        mutant
      17. Domain d2yc8q_: 2yc8 Q: [304728]
        automated match to d4bi5f_
        mutant
      18. Domain d2yc8r_: 2yc8 R: [304729]
        automated match to d4bi5f_
        mutant
      19. Domain d2yc8s_: 2yc8 S: [304730]
        automated match to d4bi5f_
        mutant
      20. Domain d2yc8t_: 2yc8 T: [304731]
        automated match to d4bi5f_
        mutant
    5. Domain for 3pf3:
    6. Domains for 4bi5:
      1. Domain d4bi5a_: 4bi5 A: [197226]
        automated match to d2yc8r_
        mutant
      2. Domain d4bi5b_: 4bi5 B: [197227]
        automated match to d2yc8r_
        mutant
      3. Domain d4bi5c_: 4bi5 C: [197228]
        automated match to d2yc8r_
        mutant
      4. Domain d4bi5d_: 4bi5 D: [197229]
        automated match to d2yc8r_
        mutant
      5. Domain d4bi5e_: 4bi5 E: [197230]
        automated match to d2yc8r_
        mutant
      6. Domain d4bi5f_: 4bi5 F: [201625]
        mutant
      7. Domain d4bi5g_: 4bi5 G: [201626]
        mutant
      8. Domain d4bi5h_: 4bi5 H: [201627]
        mutant
      9. Domain d4bi5i_: 4bi5 I: [201628]
        mutant
      10. Domain d4bi5j_: 4bi5 J: [201629]
        mutant
      11. Domain d4bi5k_: 4bi5 K: [201630]
        mutant
      12. Domain d4bi5l_: 4bi5 L: [201631]
        mutant
      13. Domain d4bi5m_: 4bi5 M: [201632]
        mutant
      14. Domain d4bi5n_: 4bi5 N: [201633]
        mutant
      15. Domain d4bi5o_: 4bi5 O: [201634]
        mutant
      16. Domain d4bi5p_: 4bi5 P: [201635]
        mutant
      17. Domain d4bi5q_: 4bi5 Q: [201636]
        mutant
      18. Domain d4bi5r_: 4bi5 R: [201637]
        mutant
      19. Domain d4bi5s_: 4bi5 S: [201638]
        mutant
      20. Domain d4bi5t_: 4bi5 T: [201639]
        mutant
    7. Domain for 4bi6:
    8. Domain for 4bi7:
  11. Green alga (Chlamydomonas reinhardtii) [TaxId:3055] [230267] (1 PDB entry)
  12. Helicobacter pylori [TaxId:85962] [225412] (1 PDB entry)
  13. Leishmania sp. [TaxId:438838] [227847] (1 PDB entry)
  14. Leptospira interrogans [TaxId:1291351] [311763] (2 PDB entries)
    1. Domain for 4x22:
    2. Domains for 4ymz:
      1. Domain d4ymza_: 4ymz A: [312129]
        automated match to d3uwub_
        complexed with 13p, edo, so4
      2. Domain d4ymzb_: 4ymz B: [312198]
        automated match to d3uwub_
        complexed with 13p, edo, so4
  15. Mycobacterium tuberculosis [TaxId:1773] [225650] (1 PDB entry)
  16. Mycobacterium tuberculosis [TaxId:83332] [189828] (2 PDB entries)
    1. Domains for 3ta6:
      1. Domain d3ta6a_: 3ta6 A: [185739]
        automated match to d1b9bb_
        complexed with flc
      2. Domain d3ta6b_: 3ta6 B: [185740]
        automated match to d1b9bb_
        complexed with flc
    2. Domains for 3tao:
      1. Domain d3taoa_: 3tao A: [185742]
        automated match to d1b9bb_
        complexed with pgh
      2. Domain d3taob_: 3tao B: [185743]
        automated match to d1b9bb_
        complexed with pgh
  17. Streptomyces coelicolor [TaxId:100226] [275080] (1 PDB entry)
  18. Synechocystis sp. [TaxId:1111708] [361356] (1 PDB entry)
  19. Taenia solium [TaxId:6204] [378897] (1 PDB entry)
  20. Thale cress (Arabidopsis thaliana) [TaxId:3702] [268515] (8 PDB entries)
    1. Domains for 4obt:
      1. Domain d4obta1: 4obt A:3-251 [280464]
        Other proteins in same PDB: d4obta2, d4obtb2
        automated match to d1tmha_
      2. Domain d4obtb1: 4obt B:3-251 [280463]
        Other proteins in same PDB: d4obta2, d4obtb2
        automated match to d1tmha_
    2. Domains for 4ohq:
      1. Domain d4ohqa_: 4ohq A: [268520]
        automated match to d1m6ja_
      2. Domain d4ohqb_: 4ohq B: [268516]
        automated match to d1m6ja_
    3. Domain for 6nxq:
    4. Domain for 6nxr:
    5. Domains for 6nxs:
      1. Domain d6nxsa1: 6nxs A:3-250 [380422]
        Other proteins in same PDB: d6nxsa2, d6nxsb2
        automated match to d1tmha_
        complexed with na; mutant
      2. Domain d6nxsb1: 6nxs B:3-249 [380424]
        Other proteins in same PDB: d6nxsa2, d6nxsb2
        automated match to d1tmha_
        complexed with na; mutant
    6. Domains for 6nxw:
      1. Domain d6nxwa1: 6nxw A:3-251 [380754]
        Other proteins in same PDB: d6nxwa2, d6nxwb2, d6nxwc2
        automated match to d1tmha_
        mutant
      2. Domain d6nxwb1: 6nxw B:3-251 [380779]
        Other proteins in same PDB: d6nxwa2, d6nxwb2, d6nxwc2
        automated match to d1tmha_
        mutant
      3. Domain d6nxwc1: 6nxw C:1-251 [380726]
        Other proteins in same PDB: d6nxwa2, d6nxwb2, d6nxwc2
        automated match to d1tmha_
        mutant
      4. Domain d6nxwd_: 6nxw D: [380794]
        Other proteins in same PDB: d6nxwa2, d6nxwb2, d6nxwc2
        automated match to d1tmha_
        mutant
    7. Domains for 6nxx:
      1. Domain d6nxxa_: 6nxx A: [380766]
        automated match to d1tmha_
        complexed with na; mutant
      2. Domain d6nxxb_: 6nxx B: [380759]
        automated match to d1tmha_
        complexed with na; mutant
    8. Domain for 6nxy:
  21. Thermoplasma acidophilum [TaxId:273075] [318086] (2 PDB entries)
    1. Domains for 5csr:
      1. Domain d5csra_: 5csr A: [318107]
        Other proteins in same PDB: d5csrc2, d5csrd2
        automated match to d2h6ra_
        complexed with cl, gol
      2. Domain d5csrb_: 5csr B: [318128]
        Other proteins in same PDB: d5csrc2, d5csrd2
        automated match to d2h6ra_
        complexed with cl, gol
      3. Domain d5csrc1: 5csr C:1-216 [318098]
        Other proteins in same PDB: d5csrc2, d5csrd2
        automated match to d2h6ra_
        complexed with cl, gol
      4. Domain d5csrd1: 5csr D:1-216 [318126]
        Other proteins in same PDB: d5csrc2, d5csrd2
        automated match to d2h6ra_
        complexed with cl, gol
    2. Domains for 5css:
      1. Domain d5cssa_: 5css A: [318088]
        automated match to d2h6ra_
        complexed with cl, g3p
      2. Domain d5cssb_: 5css B: [318087]
        automated match to d2h6ra_
        complexed with cl, g3p
      3. Domain d5cssc_: 5css C: [318129]
        automated match to d2h6ra_
        complexed with cl, g3p
      4. Domain d5cssd_: 5css D: [318116]
        automated match to d2h6ra_
        complexed with cl, g3p
  22. Toxoplasma gondii [TaxId:508771] [330219] (1 PDB entry)
  23. Trichomonas vaginalis [TaxId:5722] [195009] (12 PDB entries)
    1. Domain for 3qsr:
    2. Domain for 3qst:
    3. Domain for 4o4v:
    4. Domain for 4o4w:
    5. Domain for 4o50:
    6. Domain for 4o52:
    7. Domain for 4o53:
    8. Domain for 4o54:
    9. Domain for 4o57:
    10. Domain for 4rcx:
    11. Domain for 4wje:
    12. Domain for 5vwn:
  24. Trypanosoma cruzi [TaxId:5693] [228042] (2 PDB entries)
    1. Domains for 4hhp:
      1. Domain d4hhpa_: 4hhp A: [234648]
        automated match to d4hhpb_
        complexed with gol, so4; mutant
      2. Domain d4hhpb_: 4hhp B: [228302]
        automated match to d4ff7a_
        complexed with gol, so4; mutant
    2. Domains for 4jeq:
      1. Domain d4jeqa_: 4jeq A: [234974]
        automated match to d4jeqf_
        complexed with peg, so4
      2. Domain d4jeqb_: 4jeq B: [234973]
        automated match to d4jeqf_
        complexed with peg, so4
      3. Domain d4jeqc_: 4jeq C: [234976]
        automated match to d4jeqf_
        complexed with peg, so4
      4. Domain d4jeqd_: 4jeq D: [234975]
        automated match to d4jeqf_
        complexed with peg, so4
      5. Domain d4jeqe_: 4jeq E: [228044]
        automated match to d4ff7a_
        complexed with peg, so4
      6. Domain d4jeqf_: 4jeq F: [228043]
        automated match to d4ff7a_
        complexed with peg, so4
      7. Domain d4jeqg_: 4jeq G: [234980]
        automated match to d4jeqf_
        complexed with peg, so4
      8. Domain d4jeqh_: 4jeq H: [234979]
        automated match to d4jeqf_
        complexed with peg, so4
      9. Domain d4jeqi_: 4jeq I: [234978]
        automated match to d4jeqf_
        complexed with peg, so4
      10. Domain d4jeqj_: 4jeq J: [234981]
        automated match to d4jeqf_
        complexed with peg, so4
      11. Domain d4jeqk_: 4jeq K: [234982]
        automated match to d4jeqf_
        complexed with peg, so4
      12. Domain d4jeql_: 4jeq L: [234983]
        automated match to d4jeqf_
        complexed with peg, so4
  25. Maize (Zea mays) [TaxId:4577] [358451] (1 PDB entry)

More info for Protein automated matches from c.1.1.0: automated matches

Timeline for Protein automated matches from c.1.1.0: automated matches: