SCOPe 2.06: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.06
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

Fold c.77: Isocitrate/Isopropylmalate dehydrogenase-like [53658] (1 superfamily)
consists of two intertwined (sub)domains related by pseudo dyad; duplication
3 layers: a/b/a; single mixed beta-sheet of 10 strands, order 213A945867 (A=10); strands from 5 to 9 are antiparallel to the rest

Superfamily c.77.1: Isocitrate/Isopropylmalate dehydrogenase-like [53659] (6 families)
the constituent families form similar dimers
Family c.77.1.0: automated matches [191423] (1 protein)
not a true family
Protein automated matches [190603] (16 species)
not a true protein

Species:

Aeropyrum pernix [TaxId:272557] [188121] (1 PDB entry)
- Domains for 1xkd:
  1. Domain d1xkda_: 1xkd A: [162081]
    automated match to d1hqsa_
    complexed with ca, ict, nap
  2. Domain d1xkdb_: 1xkd B: [162082]
    automated match to d1hqsa_
    complexed with ca, ict, nap
Aeropyrum pernix [TaxId:56636] [188025] (3 PDB entries)
1. Domains for 1tyo:
  1. Domain d1tyoa_: 1tyo A: [161789]
    automated match to d1hqsa_
    complexed with enp
  2. Domain d1tyob_: 1tyo B: [161790]
    automated match to d1hqsa_
    complexed with enp
2. Domains for 1v94:
  1. Domain d1v94a_: 1v94 A: [161837]
    automated match to d1hqsa_
  2. Domain d1v94b_: 1v94 B: [161838]
    automated match to d1hqsa_
3. Domains for 1xgv:
  1. Domain d1xgva_: 1xgv A: [162074]
    automated match to d1hqsa_
  2. Domain d1xgvb_: 1xgv B: [162075]
    automated match to d1hqsa_
Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [188333] (1 PDB entry)
- Domains for 3blx:
  1. Domain d3blxa_: 3blx A: [172701]
    automated match to d1wpwa_
  2. Domain d3blxb_: 3blx B: [194944]
    automated match to d3blxc_
  3. Domain d3blxc_: 3blx C: [172702]
    automated match to d1wpwa_
  4. Domain d3blxd_: 3blx D: [194942]
    automated match to d3blxc_
  5. Domain d3blxe_: 3blx E: [172703]
    automated match to d1wpwa_
  6. Domain d3blxf_: 3blx F: [199103]
    automated match to d3blxd_
  7. Domain d3blxg_: 3blx G: [172704]
    automated match to d1wpwa_
  8. Domain d3blxh_: 3blx H: [194943]
    automated match to d3blxc_
  9. Domain d3blxi_: 3blx I: [172705]
    automated match to d1wpwa_
  10. Domain d3blxj_: 3blx J: [199104]
    automated match to d3blxd_
  11. Domain d3blxk_: 3blx K: [172706]
    automated match to d1wpwa_
  12. Domain d3blxl_: 3blx L: [199105]
    automated match to d3blxd_
  13. Domain d3blxm_: 3blx M: [172707]
    automated match to d1wpwa_
  14. Domain d3blxn_: 3blx N: [199106]
    automated match to d3blxd_
  15. Domain d3blxo_: 3blx O: [172708]
    automated match to d1wpwa_
  16. Domain d3blxp_: 3blx P: [194945]
    automated match to d3blxc_
Burkholderia thailandensis [TaxId:271848] [269591] (1 PDB entry)
- Domains for 4xxv:
  1. Domain d4xxva1: 4xxv A:1-355 [269592]
    Other proteins in same PDB: d4xxva2
    automated match to d1cnza_
    complexed with gol, nad
  2. Domain d4xxvb_: 4xxv B: [269593]
    Other proteins in same PDB: d4xxva2
    automated match to d1cnza_
    complexed with gol, nad
Burkholderia xenovorans [TaxId:266265] [194800] (1 PDB entry)
- Domain for 4aty:
  - Domain d4atya_: 4aty A: [194801]
    automated match to d2hi1b_
    complexed with bme, zn
Clostridium thermocellum [TaxId:1515] [192994] (2 PDB entries)
1. Domain for 4aou:
  - Domain d4aoua_: 4aou A: [193002]
    automated match to d2uxqa_
    complexed with ict, mg, nap
2. Domains for 4aoy:
  1. Domain d4aoya_: 4aoy A: [192997]
    automated match to d2uxqa_
  2. Domain d4aoyb_: 4aoy B: [193001]
    automated match to d2uxqa_
  3. Domain d4aoyc_: 4aoy C: [192999]
    automated match to d2uxqa_
  4. Domain d4aoyd_: 4aoy D: [193004]
    automated match to d2uxqa_
Desulfotalea psychrophila [TaxId:84980] [188344] (3 PDB entries)
1. Domains for 2uxq:
  1. Domain d2uxqa_: 2uxq A: [168214]
    automated match to d1lwda_
    complexed with gol, mg, peg, so4
  2. Domain d2uxqb_: 2uxq B: [168215]
    automated match to d1lwda_
    complexed with gol, mg, peg, so4
  3. Domain d2uxqc_: 2uxq C: [168216]
    automated match to d1lwda_
    complexed with gol, mg, peg, so4
  4. Domain d2uxqd_: 2uxq D: [168217]
    automated match to d1lwda_
    complexed with gol, mg, peg, so4
2. Domains for 2uxr:
  1. Domain d2uxra_: 2uxr A: [168218]
    automated match to d1lwda_
    complexed with gol, ict, mg
  2. Domain d2uxrb_: 2uxr B: [168219]
    automated match to d1lwda_
    complexed with gol, ict, mg
3. Domain for 4aov:
  - Domain d4aova_: 4aov A: [193011]
    automated match to d2uxqa_
    complexed with ict, mg, nap
Homo sapiens [TaxId:9606] [329721] (5 PDB entries)
1. Domains for 5gre:
  1. Domain d5grea_: 5gre A: [329797]
    automated match to d3blxo_
    complexed with adp, cit, mg
  2. Domain d5greb_: 5gre B: [329770]
    automated match to d3blxc_
    complexed with adp, cit, mg
2. Domains for 5grf:
  1. Domain d5grfa_: 5grf A: [329811]
    automated match to d3blxo_
    complexed with adp, cit, mg; mutant
  2. Domain d5grfb_: 5grf B: [329729]
    automated match to d3blxc_
    complexed with adp, cit, mg; mutant
3. Domains for 5grh:
  1. Domain d5grha_: 5grh A: [329722]
    automated match to d3blxo_
    complexed with mg
  2. Domain d5grhb_: 5grh B: [329776]
    automated match to d3blxc_
    complexed with mg
4. Domains for 5gri:
  1. Domain d5gria_: 5gri A: [329759]
    automated match to d3blxo_
    complexed with cit, mg
  2. Domain d5grib_: 5gri B: [329750]
    automated match to d3blxc_
    complexed with cit, mg
5. Domains for 5grl:
  1. Domain d5grla_: 5grl A: [329778]
    automated match to d3blxo_
    complexed with adp, ict, mg
  2. Domain d5grlb_: 5grl B: [329943]
    automated match to d3blxc_
    complexed with adp, ict, mg
Pseudomonas putida [TaxId:303] [225791] (2 PDB entries)
1. Domains for 3flk:
  1. Domain d3flka_: 3flk A: [210005]
    automated match to d3udua_
    complexed with dtt, mg, nai, nh4, oxl, so4
  2. Domain d3flkb_: 3flk B: [210006]
    automated match to d3udua_
    complexed with dtt, mg, nai, nh4, oxl, so4
  3. Domain d3flkc_: 3flk C: [210007]
    automated match to d3udua_
    complexed with dtt, mg, nai, nh4, oxl, so4
  4. Domain d3flkd_: 3flk D: [210008]
    automated match to d3udua_
    complexed with dtt, mg, nai, nh4, oxl, so4
2. Domain for 3fmx:
  - Domain d3fmxx_: 3fmx X: [210011]
    automated match to d3udua_
    complexed with nai, nh4
Salmonella typhimurium [TaxId:99287] [187811] (1 PDB entry)
- Domains for 2hi1:
  1. Domain d2hi1a_: 2hi1 A: [165117]
    automated match to d1ps6a_
  2. Domain d2hi1b_: 2hi1 B: [165118]
    automated match to d1ps6a_
Schizosaccharomyces pombe [TaxId:284812] [189802] (2 PDB entries)
1. Domains for 3ty3:
  1. Domain d3ty3a_: 3ty3 A: [186003]
    automated match to d1wpwa_
    complexed with ggg, gol
  2. Domain d3ty3b_: 3ty3 B: [186004]
    automated match to d1wpwa_
    complexed with ggg, gol
2. Domains for 3ty4:
  1. Domain d3ty4a_: 3ty4 A: [186005]
    automated match to d1wpwa_
    complexed with gol
  2. Domain d3ty4b_: 3ty4 B: [186006]
    automated match to d1wpwa_
    complexed with gol
Sulfolobus tokodaii [TaxId:273063] [187622] (3 PDB entries)
1. Domains for 2dht:
  1. Domain d2dhta_: 2dht A: [163638]
    automated match to d1ai2a_
  2. Domain d2dhtb_: 2dht B: [163639]
    automated match to d1ai2a_
2. Domains for 2e0c:
  1. Domain d2e0ca_: 2e0c A: [163781]
    automated match to d1ai2a_
  2. Domain d2e0cb_: 2e0c B: [163782]
    automated match to d1ai2a_
3. Domains for 2e5m:
  1. Domain d2e5ma_: 2e5m A: [163834]
    automated match to d1ai2a_
    complexed with nap
  2. Domain d2e5mb_: 2e5m B: [163835]
    automated match to d1ai2a_
    complexed with nap
Thermococcus kodakarensis [TaxId:69014] [326937] (4 PDB entries)
1. Domain for 5hn3:
  - Domain d5hn3a_: 5hn3 A: [326985]
    automated match to d1x0la_
    complexed with imd, na
2. Domain for 5hn4:
  - Domain d5hn4a_: 5hn4 A: [326938]
    automated match to d1x0la_
    complexed with 48y, imd, ipa, mn
3. Domain for 5hn5:
  - Domain d5hn5a_: 5hn5 A: [326952]
    automated match to d1x0la_
    complexed with ict, mn, mpd
4. Domain for 5hn6:
  - Domain d5hn6a_: 5hn6 A: [326957]
    automated match to d1x0la_
    complexed with ipm, mn, mpd
Thermotoga maritima [TaxId:243274] [188199] (1 PDB entry)
- Domains for 1zor:
  1. Domain d1zora_: 1zor A: [162562]
    automated match to d1lwda_
    complexed with na
  2. Domain d1zorb_: 1zor B: [162563]
    automated match to d1lwda_
    complexed with na
Thermus thermophilus [TaxId:262724] [189625] (2 PDB entries)
1. Domains for 3ah3:
  1. Domain d3ah3a_: 3ah3 A: [172162]
    automated match to d1wpwa_
    complexed with edo, so4
  2. Domain d3ah3b_: 3ah3 B: [172163]
    automated match to d1wpwa_
    complexed with edo, so4
  3. Domain d3ah3c_: 3ah3 C: [172164]
    automated match to d1wpwa_
    complexed with edo, so4
  4. Domain d3ah3d_: 3ah3 D: [172165]
    automated match to d1wpwa_
    complexed with edo, so4
2. Domains for 4yb4:
  1. Domain d4yb4a_: 4yb4 A: [312293]
    automated match to d1x0la_
    complexed with 48y, gol, mg, nai, so4
  2. Domain d4yb4b_: 4yb4 B: [312041]
    automated match to d1x0la_
    complexed with 48y, gol, mg, nai, so4
  3. Domain d4yb4c_: 4yb4 C: [311927]
    automated match to d1x0la_
    complexed with 48y, gol, mg, nai, so4
  4. Domain d4yb4d_: 4yb4 D: [312026]
    automated match to d1x0la_
    complexed with 48y, gol, mg, nai, so4
Thermus thermophilus [TaxId:274] [188105] (1 PDB entry)
- Domains for 1x0l:
  1. Domain d1x0la_: 1x0l A: [162018]
    automated match to d1wpwa_
  2. Domain d1x0lb_: 1x0l B: [162019]
    automated match to d1wpwa_

More info for Protein automated matches from c.77.1.0: automated matches

Timeline for Protein automated matches from c.77.1.0: automated matches:

Protein automated matches from c.77.1.0: automated matches first appeared in SCOPe 2.01
Protein automated matches from c.77.1.0: automated matches appears in SCOPe 2.05
Protein automated matches from c.77.1.0: automated matches appears in SCOPe 2.07
Protein automated matches from c.77.1.0: automated matches appears in the current release, SCOPe 2.08