Lineage for Protein: automated matches

  1. Root: SCOPe 2.03
  2. 1336837Class c: Alpha and beta proteins (a/b) [51349] (147 folds)
  3. 1386088Fold c.77: Isocitrate/Isopropylmalate dehydrogenase-like [53658] (1 superfamily)
    consists of two intertwined (sub)domains related by pseudo dyad; duplication
    3 layers: a/b/a; single mixed beta-sheet of 10 strands, order 213A945867 (A=10); strands from 5 to 9 are antiparallel to the rest
  4. 1386089Superfamily c.77.1: Isocitrate/Isopropylmalate dehydrogenase-like [53659] (6 families) (S)
    the constituent families form similar dimers
  5. 1386395Family c.77.1.0: automated matches [191423] (1 protein)
    not a true family
  6. 1386396Protein automated matches [190603] (13 species)
    not a true protein

Species:

  1. 1386397Aeropyrum pernix [TaxId:272557] [188121] (1 PDB entry)
  2. 1386400Aeropyrum pernix [TaxId:56636] [188025] (3 PDB entries)
    1. Domains for 1tyo:
      1. 1386401Domain d1tyoa_: 1tyo A: [161789]
        automated match to d1hqsa_
        complexed with enp
      2. 1386402Domain d1tyob_: 1tyo B: [161790]
        automated match to d1hqsa_
        complexed with enp
    2. Domains for 1v94:
      1. 1386403Domain d1v94a_: 1v94 A: [161837]
        automated match to d1hqsa_
      2. 1386404Domain d1v94b_: 1v94 B: [161838]
        automated match to d1hqsa_
    3. Domains for 1xgv:
      1. 1386405Domain d1xgva_: 1xgv A: [162074]
        automated match to d1hqsa_
      2. 1386406Domain d1xgvb_: 1xgv B: [162075]
        automated match to d1hqsa_
  3. 1386407Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [188333] (1 PDB entry)
  4. 1386424Burkholderia xenovorans [TaxId:266265] [194800] (1 PDB entry)
  5. 1386426Clostridium thermocellum [TaxId:1515] [192994] (2 PDB entries)
    1. Domain for 4aou:
    2. Domains for 4aoy:
      1. 1386427Domain d4aoya_: 4aoy A: [192997]
        automated match to d2uxqa_
      2. 1386428Domain d4aoyb_: 4aoy B: [193001]
        automated match to d2uxqa_
      3. 1386429Domain d4aoyc_: 4aoy C: [192999]
        automated match to d2uxqa_
      4. 1386430Domain d4aoyd_: 4aoy D: [193004]
        automated match to d2uxqa_
  6. 1386432Desulfotalea psychrophila [TaxId:84980] [188344] (3 PDB entries)
    1. Domains for 2uxq:
      1. 1386433Domain d2uxqa_: 2uxq A: [168214]
        automated match to d1lwda_
        complexed with gol, mg, peg, so4
      2. 1386434Domain d2uxqb_: 2uxq B: [168215]
        automated match to d1lwda_
        complexed with gol, mg, peg, so4
      3. 1386435Domain d2uxqc_: 2uxq C: [168216]
        automated match to d1lwda_
        complexed with gol, mg, peg, so4
      4. 1386436Domain d2uxqd_: 2uxq D: [168217]
        automated match to d1lwda_
        complexed with gol, mg, peg, so4
    2. Domains for 2uxr:
      1. 1386438Domain d2uxra_: 2uxr A: [168218]
        automated match to d1lwda_
        complexed with gol, ict, mg
      2. 1386439Domain d2uxrb_: 2uxr B: [168219]
        automated match to d1lwda_
        complexed with gol, ict, mg
    3. Domain for 4aov:
  7. 1386440Pseudomonas putida [TaxId:303] [225791] (2 PDB entries)
    1. Domains for 3flk:
      1. 1386441Domain d3flka_: 3flk A: [210005]
        automated match to d3udua_
        complexed with dtt, mg, nad, nh4, oxl, so4
      2. 1386442Domain d3flkb_: 3flk B: [210006]
        automated match to d3udua_
        complexed with dtt, mg, nad, nh4, oxl, so4
      3. 1386443Domain d3flkc_: 3flk C: [210007]
        automated match to d3udua_
        complexed with dtt, mg, nad, nh4, oxl, so4
      4. 1386444Domain d3flkd_: 3flk D: [210008]
        automated match to d3udua_
        complexed with dtt, mg, nad, nh4, oxl, so4
    2. Domain for 3fmx:
  8. 1386446Salmonella typhimurium [TaxId:99287] [187811] (1 PDB entry)
  9. 1386449Schizosaccharomyces pombe [TaxId:284812] [189802] (2 PDB entries)
    1. Domains for 3ty3:
      1. 1386452Domain d3ty3a_: 3ty3 A: [186003]
        automated match to d1wpwa_
        complexed with ggg, gol
      2. 1386453Domain d3ty3b_: 3ty3 B: [186004]
        automated match to d1wpwa_
        complexed with ggg, gol
    2. Domains for 3ty4:
      1. 1386450Domain d3ty4a_: 3ty4 A: [186005]
        automated match to d1wpwa_
        complexed with gol
      2. 1386451Domain d3ty4b_: 3ty4 B: [186006]
        automated match to d1wpwa_
        complexed with gol
  10. 1386454Sulfolobus tokodaii [TaxId:273063] [187622] (3 PDB entries)
    1. Domains for 2dht:
      1. 1386459Domain d2dhta_: 2dht A: [163638]
        automated match to d1ai2a_
      2. 1386460Domain d2dhtb_: 2dht B: [163639]
        automated match to d1ai2a_
    2. Domains for 2e0c:
      1. 1386455Domain d2e0ca_: 2e0c A: [163781]
        automated match to d1ai2a_
      2. 1386456Domain d2e0cb_: 2e0c B: [163782]
        automated match to d1ai2a_
    3. Domains for 2e5m:
      1. 1386457Domain d2e5ma_: 2e5m A: [163834]
        automated match to d1ai2a_
        complexed with nap
      2. 1386458Domain d2e5mb_: 2e5m B: [163835]
        automated match to d1ai2a_
        complexed with nap
  11. 1386461Thermotoga maritima [TaxId:243274] [188199] (1 PDB entry)
  12. 1386464Thermus thermophilus [TaxId:262724] [189625] (1 PDB entry)
  13. 1386469Thermus thermophilus [TaxId:274] [188105] (1 PDB entry)

More info for Protein automated matches from c.77.1.0: automated matches

Timeline for Protein automated matches from c.77.1.0: automated matches: