SCOPe 2.01: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.01
Class c: Alpha and beta proteins (a/b) [51349] (147 folds)

Fold c.77: Isocitrate/Isopropylmalate dehydrogenase-like [53658] (1 superfamily)
consists of two intertwined (sub)domains related by pseudo dyad; duplication
3 layers: a/b/a; single mixed beta-sheet of 10 strands, order 213A945867 (A=10); strands from 5 to 9 are antiparallel to the rest

Superfamily c.77.1: Isocitrate/Isopropylmalate dehydrogenase-like [53659] (6 families)
the constituent families form similar dimers
Family c.77.1.0: automated matches [191423] (1 protein)
not a true family
Protein automated matches [190603] (10 species)
not a true protein

Species:

Aeropyrum pernix [TaxId:272557] [188121] (1 PDB entry)
- Domains for 1xkd:
  1. Domain d1xkda_: 1xkd A: [162081]
    automated match to d1hqsa_
    complexed with ca, ict, nap
  2. Domain d1xkdb_: 1xkd B: [162082]
    automated match to d1hqsa_
    complexed with ca, ict, nap
Aeropyrum pernix [TaxId:56636] [188025] (3 PDB entries)
1. Domains for 1tyo:
  1. Domain d1tyoa_: 1tyo A: [161789]
    automated match to d1hqsa_
    complexed with enp
  2. Domain d1tyob_: 1tyo B: [161790]
    automated match to d1hqsa_
    complexed with enp
2. Domains for 1v94:
  1. Domain d1v94a_: 1v94 A: [161837]
    automated match to d1hqsa_
  2. Domain d1v94b_: 1v94 B: [161838]
    automated match to d1hqsa_
3. Domains for 1xgv:
  1. Domain d1xgva_: 1xgv A: [162074]
    automated match to d1hqsa_
  2. Domain d1xgvb_: 1xgv B: [162075]
    automated match to d1hqsa_
Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [188333] (1 PDB entry)
- Domains for 3blx:
  1. Domain d3blxa_: 3blx A: [172701]
    automated match to d1wpwa_
  2. Domain d3blxc_: 3blx C: [172702]
    automated match to d1wpwa_
  3. Domain d3blxe_: 3blx E: [172703]
    automated match to d1wpwa_
  4. Domain d3blxg_: 3blx G: [172704]
    automated match to d1wpwa_
  5. Domain d3blxi_: 3blx I: [172705]
    automated match to d1wpwa_
  6. Domain d3blxk_: 3blx K: [172706]
    automated match to d1wpwa_
  7. Domain d3blxm_: 3blx M: [172707]
    automated match to d1wpwa_
  8. Domain d3blxo_: 3blx O: [172708]
    automated match to d1wpwa_
Desulfotalea psychrophila [TaxId:84980] [188344] (2 PDB entries)
1. Domains for 2uxq:
  1. Domain d2uxqa_: 2uxq A: [168214]
    automated match to d1lwda_
    complexed with gol, mg, peg, so4
  2. Domain d2uxqb_: 2uxq B: [168215]
    automated match to d1lwda_
    complexed with gol, mg, peg, so4
  3. Domain d2uxqc_: 2uxq C: [168216]
    automated match to d1lwda_
    complexed with gol, mg, peg, so4
  4. Domain d2uxqd_: 2uxq D: [168217]
    automated match to d1lwda_
    complexed with gol, mg, peg, so4
2. Domains for 2uxr:
  1. Domain d2uxra_: 2uxr A: [168218]
    automated match to d1lwda_
    complexed with gol, ict, mg
  2. Domain d2uxrb_: 2uxr B: [168219]
    automated match to d1lwda_
    complexed with gol, ict, mg
Salmonella typhimurium [TaxId:99287] [187811] (1 PDB entry)
- Domains for 2hi1:
  1. Domain d2hi1a_: 2hi1 A: [165117]
    automated match to d1ps6a_
  2. Domain d2hi1b_: 2hi1 B: [165118]
    automated match to d1ps6a_
Schizosaccharomyces pombe [TaxId:284812] [189802] (2 PDB entries)
1. Domains for 3ty3:
  1. Domain d3ty3a_: 3ty3 A: [186003]
    automated match to d1wpwa_
    complexed with ggg, gol
  2. Domain d3ty3b_: 3ty3 B: [186004]
    automated match to d1wpwa_
    complexed with ggg, gol
2. Domains for 3ty4:
  1. Domain d3ty4a_: 3ty4 A: [186005]
    automated match to d1wpwa_
    complexed with gol
  2. Domain d3ty4b_: 3ty4 B: [186006]
    automated match to d1wpwa_
    complexed with gol
Sulfolobus tokodaii [TaxId:273063] [187622] (3 PDB entries)
1. Domains for 2dht:
  1. Domain d2dhta_: 2dht A: [163638]
    automated match to d1ai2a_
  2. Domain d2dhtb_: 2dht B: [163639]
    automated match to d1ai2a_
2. Domains for 2e0c:
  1. Domain d2e0ca_: 2e0c A: [163781]
    automated match to d1ai2a_
  2. Domain d2e0cb_: 2e0c B: [163782]
    automated match to d1ai2a_
3. Domains for 2e5m:
  1. Domain d2e5ma_: 2e5m A: [163834]
    automated match to d1ai2a_
    complexed with nap
  2. Domain d2e5mb_: 2e5m B: [163835]
    automated match to d1ai2a_
    complexed with nap
Thermotoga maritima [TaxId:243274] [188199] (1 PDB entry)
- Domains for 1zor:
  1. Domain d1zora_: 1zor A: [162562]
    automated match to d1lwda_
    complexed with na
  2. Domain d1zorb_: 1zor B: [162563]
    automated match to d1lwda_
    complexed with na
Thermus thermophilus [TaxId:262724] [189625] (1 PDB entry)
- Domains for 3ah3:
  1. Domain d3ah3a_: 3ah3 A: [172162]
    automated match to d1wpwa_
    complexed with edo, so4
  2. Domain d3ah3b_: 3ah3 B: [172163]
    automated match to d1wpwa_
    complexed with edo, so4
  3. Domain d3ah3c_: 3ah3 C: [172164]
    automated match to d1wpwa_
    complexed with edo, so4
  4. Domain d3ah3d_: 3ah3 D: [172165]
    automated match to d1wpwa_
    complexed with edo, so4
Thermus thermophilus [TaxId:274] [188105] (1 PDB entry)
- Domains for 1x0l:
  1. Domain d1x0la_: 1x0l A: [162018]
    automated match to d1wpwa_
  2. Domain d1x0lb_: 1x0l B: [162019]
    automated match to d1wpwa_

More info for Protein automated matches from c.77.1.0: automated matches

Timeline for Protein automated matches from c.77.1.0: automated matches:

Protein automated matches from c.77.1.0: automated matches is new in SCOPe 2.01-stable
Protein automated matches from c.77.1.0: automated matches appears in SCOPe 2.02
Protein automated matches from c.77.1.0: automated matches appears in the current release, SCOPe 2.08