Lineage for Protein: automated matches

  1. Root: SCOPe 2.08
  2. 2826024Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2905791Fold c.77: Isocitrate/Isopropylmalate dehydrogenase-like [53658] (1 superfamily)
    consists of two intertwined (sub)domains related by pseudo dyad; duplication
    3 layers: a/b/a; single mixed beta-sheet of 10 strands, order 213A945867 (A=10); strands from 5 to 9 are antiparallel to the rest
  4. 2905792Superfamily c.77.1: Isocitrate/Isopropylmalate dehydrogenase-like [53659] (6 families) (S)
    the constituent families form similar dimers
  5. 2906251Family c.77.1.0: automated matches [191423] (1 protein)
    not a true family
  6. 2906252Protein automated matches [190603] (25 species)
    not a true protein

Species:

  1. 2906253Aeropyrum pernix [TaxId:272557] [188121] (1 PDB entry)
  2. 2906256Aeropyrum pernix [TaxId:56636] [188025] (3 PDB entries)
    1. Domains for 1tyo:
      1. 2906259Domain d1tyoa_: 1tyo A: [161789]
        automated match to d1hqsa_
        complexed with enp
      2. 2906260Domain d1tyob_: 1tyo B: [161790]
        automated match to d1hqsa_
        complexed with enp
    2. Domains for 1v94:
      1. 2906257Domain d1v94a_: 1v94 A: [161837]
        automated match to d1hqsa_
      2. 2906258Domain d1v94b_: 1v94 B: [161838]
        automated match to d1hqsa_
    3. Domains for 1xgv:
      1. 2906261Domain d1xgva_: 1xgv A: [162074]
        automated match to d1hqsa_
      2. 2906262Domain d1xgvb_: 1xgv B: [162075]
        automated match to d1hqsa_
  3. 2906263Bacillus subtilis [TaxId:224308] [369578] (1 PDB entry)
  4. 2906266Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [188333] (1 PDB entry)
  5. 2906283Burkholderia phymatum [TaxId:391038] [419910] (1 PDB entry)
  6. 2906286Burkholderia thailandensis [TaxId:271848] [269591] (1 PDB entry)
  7. 2906289Burkholderia xenovorans [TaxId:266265] [194800] (1 PDB entry)
  8. 2906291Clostridium thermocellum [TaxId:1515] [192994] (2 PDB entries)
    1. Domain for 4aou:
    2. Domains for 4aoy:
      1. 2906292Domain d4aoya_: 4aoy A: [192997]
        automated match to d2uxqa_
      2. 2906293Domain d4aoyb_: 4aoy B: [193001]
        automated match to d2uxqa_
      3. 2906294Domain d4aoyc_: 4aoy C: [192999]
        automated match to d2uxqa_
      4. 2906295Domain d4aoyd_: 4aoy D: [193004]
        automated match to d2uxqa_
  9. 2906297Desulfotalea psychrophila [TaxId:84980] [188344] (3 PDB entries)
    1. Domains for 2uxq:
      1. 2906298Domain d2uxqa_: 2uxq A: [168214]
        automated match to d1lwda_
        complexed with gol, mg, peg, so4
      2. 2906299Domain d2uxqb_: 2uxq B: [168215]
        automated match to d1lwda_
        complexed with gol, mg, peg, so4
      3. 2906300Domain d2uxqc_: 2uxq C: [168216]
        automated match to d1lwda_
        complexed with gol, mg, peg, so4
      4. 2906301Domain d2uxqd_: 2uxq D: [168217]
        automated match to d1lwda_
        complexed with gol, mg, peg, so4
    2. Domains for 2uxr:
      1. 2906302Domain d2uxra_: 2uxr A: [168218]
        automated match to d1lwda_
        complexed with gol, ict, mg
      2. 2906303Domain d2uxrb_: 2uxr B: [168219]
        automated match to d1lwda_
        complexed with gol, ict, mg
    3. Domain for 4aov:
  10. 2906305Human (Homo sapiens) [TaxId:9606] [329721] (11 PDB entries)
    1. Domains for 5gre:
      1. 2906316Domain d5grea_: 5gre A: [329797]
        automated match to d3blxo_
        complexed with adp, cit, mg
      2. 2906317Domain d5greb_: 5gre B: [329770]
        automated match to d3blxc_
        complexed with adp, cit, mg
    2. Domains for 5grf:
      1. 2906314Domain d5grfa_: 5grf A: [329811]
        automated match to d3blxo_
        complexed with adp, cit, mg; mutant
      2. 2906315Domain d5grfb_: 5grf B: [329729]
        automated match to d3blxc_
        complexed with adp, cit, mg; mutant
    3. Domains for 5grh:
      1. 2906320Domain d5grha_: 5grh A: [329722]
        automated match to d3blxo_
        complexed with mg
      2. 2906321Domain d5grhb_: 5grh B: [329776]
        automated match to d3blxc_
        complexed with mg
    4. Domains for 5gri:
      1. 2906308Domain d5gria_: 5gri A: [329759]
        automated match to d3blxo_
        complexed with cit, mg
      2. 2906309Domain d5grib_: 5gri B: [329750]
        automated match to d3blxc_
        complexed with cit, mg
    5. Domains for 5grl:
      1. 2906318Domain d5grla_: 5grl A: [329778]
        automated match to d3blxo_
        complexed with adp, ict, mg
      2. 2906319Domain d5grlb_: 5grl B: [329943]
        automated match to d3blxc_
        complexed with adp, ict, mg
    6. Domains for 5yvt:
      1. 2906312Domain d5yvta_: 5yvt A: [348976]
        automated match to d3blxo_
        complexed with mg, nai
      2. 2906313Domain d5yvtb_: 5yvt B: [348966]
        automated match to d3blxc_
        complexed with mg, nai
    7. Domains for 6kde:
      1. 2906322Domain d6kdea_: 6kde A: [374636]
        Other proteins in same PDB: d6kdeb2, d6kded2
        automated match to d3blxc_
        complexed with ca
      2. 2906323Domain d6kdeb1: 6kde B:15-340 [374677]
        Other proteins in same PDB: d6kdeb2, d6kded2
        automated match to d5grhb_
        complexed with ca
      3. 2906324Domain d6kdec_: 6kde C: [374600]
        Other proteins in same PDB: d6kdeb2, d6kded2
        automated match to d3blxc_
        complexed with ca
      4. 2906325Domain d6kded1: 6kde D:15-340 [374610]
        Other proteins in same PDB: d6kdeb2, d6kded2
        automated match to d5grhb_
        complexed with ca
    8. Domains for 6kdf:
      1. 2906334Domain d6kdfa_: 6kdf A: [374711]
        Other proteins in same PDB: d6kdfc2, d6kdfd2, d6kdfe2, d6kdff2, d6kdfh2, d6kdfj2, d6kdfl2, d6kdfn2, d6kdfp2
        automated match to d3blxc_
      2. 2906335Domain d6kdfb_: 6kdf B: [374648]
        Other proteins in same PDB: d6kdfc2, d6kdfd2, d6kdfe2, d6kdff2, d6kdfh2, d6kdfj2, d6kdfl2, d6kdfn2, d6kdfp2
        automated match to d3blxc_
      3. 2906336Domain d6kdfc1: 6kdf C:14-340 [374822]
        Other proteins in same PDB: d6kdfc2, d6kdfd2, d6kdfe2, d6kdff2, d6kdfh2, d6kdfj2, d6kdfl2, d6kdfn2, d6kdfp2
        automated match to d5grhb_
      4. 2906337Domain d6kdfd1: 6kdf D:14-340 [374945]
        Other proteins in same PDB: d6kdfc2, d6kdfd2, d6kdfe2, d6kdff2, d6kdfh2, d6kdfj2, d6kdfl2, d6kdfn2, d6kdfp2
        automated match to d5grhb_
      5. 2906338Domain d6kdfe1: 6kdf E:1-337 [374841]
        Other proteins in same PDB: d6kdfc2, d6kdfd2, d6kdfe2, d6kdff2, d6kdfh2, d6kdfj2, d6kdfl2, d6kdfn2, d6kdfp2
        automated match to d3blxc_
      6. 2906339Domain d6kdff1: 6kdf F:14-340 [374618]
        Other proteins in same PDB: d6kdfc2, d6kdfd2, d6kdfe2, d6kdff2, d6kdfh2, d6kdfj2, d6kdfl2, d6kdfn2, d6kdfp2
        automated match to d5grhb_
      7. 2906340Domain d6kdfg_: 6kdf G: [374719]
        Other proteins in same PDB: d6kdfc2, d6kdfd2, d6kdfe2, d6kdff2, d6kdfh2, d6kdfj2, d6kdfl2, d6kdfn2, d6kdfp2
        automated match to d3blxc_
      8. 2906341Domain d6kdfh1: 6kdf H:14-340 [374622]
        Other proteins in same PDB: d6kdfc2, d6kdfd2, d6kdfe2, d6kdff2, d6kdfh2, d6kdfj2, d6kdfl2, d6kdfn2, d6kdfp2
        automated match to d5grhb_
      9. 2906342Domain d6kdfi_: 6kdf I: [374709]
        Other proteins in same PDB: d6kdfc2, d6kdfd2, d6kdfe2, d6kdff2, d6kdfh2, d6kdfj2, d6kdfl2, d6kdfn2, d6kdfp2
        automated match to d3blxc_
      10. 2906343Domain d6kdfj1: 6kdf J:14-340 [374607]
        Other proteins in same PDB: d6kdfc2, d6kdfd2, d6kdfe2, d6kdff2, d6kdfh2, d6kdfj2, d6kdfl2, d6kdfn2, d6kdfp2
        automated match to d5grhb_
      11. 2906344Domain d6kdfk_: 6kdf K: [374602]
        Other proteins in same PDB: d6kdfc2, d6kdfd2, d6kdfe2, d6kdff2, d6kdfh2, d6kdfj2, d6kdfl2, d6kdfn2, d6kdfp2
        automated match to d3blxc_
      12. 2906345Domain d6kdfl1: 6kdf L:14-340 [374624]
        Other proteins in same PDB: d6kdfc2, d6kdfd2, d6kdfe2, d6kdff2, d6kdfh2, d6kdfj2, d6kdfl2, d6kdfn2, d6kdfp2
        automated match to d5grhb_
      13. 2906346Domain d6kdfm_: 6kdf M: [374656]
        Other proteins in same PDB: d6kdfc2, d6kdfd2, d6kdfe2, d6kdff2, d6kdfh2, d6kdfj2, d6kdfl2, d6kdfn2, d6kdfp2
        automated match to d3blxc_
      14. 2906347Domain d6kdfn1: 6kdf N:14-340 [374899]
        Other proteins in same PDB: d6kdfc2, d6kdfd2, d6kdfe2, d6kdff2, d6kdfh2, d6kdfj2, d6kdfl2, d6kdfn2, d6kdfp2
        automated match to d5grhb_
      15. 2906348Domain d6kdfo_: 6kdf O: [374787]
        Other proteins in same PDB: d6kdfc2, d6kdfd2, d6kdfe2, d6kdff2, d6kdfh2, d6kdfj2, d6kdfl2, d6kdfn2, d6kdfp2
        automated match to d3blxc_
      16. 2906349Domain d6kdfp1: 6kdf P:14-340 [374775]
        Other proteins in same PDB: d6kdfc2, d6kdfd2, d6kdfe2, d6kdff2, d6kdfh2, d6kdfj2, d6kdfl2, d6kdfn2, d6kdfp2
        automated match to d5grhb_
    9. Domains for 6kdy:
      1. 2906326Domain d6kdya_: 6kdy A: [374804]
        Other proteins in same PDB: d6kdyb2, d6kdyd2, d6kdyf2, d6kdyh2
        automated match to d3blxc_
        complexed with 2pe, nad, p6g, pe7, pg4
      2. 2906327Domain d6kdyb1: 6kdy B:14-340 [374734]
        Other proteins in same PDB: d6kdyb2, d6kdyd2, d6kdyf2, d6kdyh2
        automated match to d5grhb_
        complexed with 2pe, nad, p6g, pe7, pg4
      3. 2906328Domain d6kdyc_: 6kdy C: [374644]
        Other proteins in same PDB: d6kdyb2, d6kdyd2, d6kdyf2, d6kdyh2
        automated match to d3blxc_
        complexed with 2pe, nad, p6g, pe7, pg4
      4. 2906329Domain d6kdyd1: 6kdy D:13-340 [374650]
        Other proteins in same PDB: d6kdyb2, d6kdyd2, d6kdyf2, d6kdyh2
        automated match to d5grhb_
        complexed with 2pe, nad, p6g, pe7, pg4
      5. 2906330Domain d6kdye_: 6kdy E: [374596]
        Other proteins in same PDB: d6kdyb2, d6kdyd2, d6kdyf2, d6kdyh2
        automated match to d3blxc_
        complexed with 2pe, nad, p6g, pe7, pg4
      6. 2906331Domain d6kdyf1: 6kdy F:14-340 [374773]
        Other proteins in same PDB: d6kdyb2, d6kdyd2, d6kdyf2, d6kdyh2
        automated match to d5grhb_
        complexed with 2pe, nad, p6g, pe7, pg4
      7. 2906332Domain d6kdyg_: 6kdy G: [374597]
        Other proteins in same PDB: d6kdyb2, d6kdyd2, d6kdyf2, d6kdyh2
        automated match to d3blxc_
        complexed with 2pe, nad, p6g, pe7, pg4
      8. 2906333Domain d6kdyh1: 6kdy H:14-340 [374704]
        Other proteins in same PDB: d6kdyb2, d6kdyd2, d6kdyf2, d6kdyh2
        automated match to d5grhb_
        complexed with 2pe, nad, p6g, pe7, pg4
    10. Domains for 6l57:
      1. 2906310Domain d6l57a_: 6l57 A: [384652]
        automated match to d3blxa_
        complexed with atp, cit, mg
      2. 2906311Domain d6l57b_: 6l57 B: [384657]
        automated match to d3blxc_
        complexed with atp, cit, mg
    11. Domains for 6l59:
      1. 2906306Domain d6l59a_: 6l59 A: [384670]
        automated match to d3blxa_
        complexed with atp, cit, mg
      2. 2906307Domain d6l59b_: 6l59 B: [384673]
        automated match to d3blxc_
        complexed with atp, cit, mg
  11. 2906350Klebsiella pneumoniae [TaxId:72407] [355704] (1 PDB entry)
  12. 2906353Legionella pneumophila [TaxId:272624] [350221] (2 PDB entries)
    1. Domains for 6c0e:
      1. 2906355Domain d6c0ea_: 6c0e A: [350245]
        automated match to d2iv0a_
        complexed with cl, ee1, gly
      2. 2906356Domain d6c0eb_: 6c0e B: [350222]
        automated match to d2iv0a_
        complexed with cl, ee1, gly
    2. Domain for 6xmy:
  13. 2906357Methylococcus capsulatus [TaxId:243233] [397229] (1 PDB entry)
  14. 2906360Ostreococcus tauri [TaxId:70448] [378192] (4 PDB entries)
    1. Domains for 6ixl:
      1. 2906361Domain d6ixla_: 6ixl A: [378195]
        automated match to d2qfwd_
        complexed with gol, so4
      2. 2906362Domain d6ixlb_: 6ixl B: [378237]
        automated match to d2qfwd_
        complexed with gol, so4
      3. 2906363Domain d6ixlc_: 6ixl C: [378201]
        automated match to d2qfwd_
        complexed with gol, so4
      4. 2906364Domain d6ixld_: 6ixl D: [378198]
        automated match to d2qfwd_
        complexed with gol, so4
    2. Domains for 6ixn:
      1. 2906373Domain d6ixna_: 6ixn A: [378225]
        automated match to d2qfwd_
        complexed with flc, gol, nad, peg, so4
      2. 2906374Domain d6ixnb_: 6ixn B: [378205]
        automated match to d2qfwd_
        complexed with flc, gol, nad, peg, so4
      3. 2906375Domain d6ixnc_: 6ixn C: [378194]
        automated match to d2qfwd_
        complexed with flc, gol, nad, peg, so4
      4. 2906376Domain d6ixnd_: 6ixn D: [378213]
        automated match to d2qfwd_
        complexed with flc, gol, nad, peg, so4
    3. Domains for 6ixt:
      1. 2906365Domain d6ixta_: 6ixt A: [378204]
        automated match to d2qfwd_
        complexed with gol, mg, nad, so4
      2. 2906366Domain d6ixtb_: 6ixt B: [378203]
        automated match to d2qfwd_
        complexed with gol, mg, nad, so4
      3. 2906367Domain d6ixtc_: 6ixt C: [378220]
        automated match to d2qfwd_
        complexed with gol, mg, nad, so4
      4. 2906368Domain d6ixtd_: 6ixt D: [378210]
        automated match to d2qfwd_
        complexed with gol, mg, nad, so4
    4. Domains for 7e2w:
      1. 2906369Domain d7e2wa_: 7e2w A: [405202]
        automated match to d2qfwd_
        complexed with flc, gol, ict, ipa, mg
      2. 2906370Domain d7e2wb_: 7e2w B: [405151]
        automated match to d2qfwd_
        complexed with flc, gol, ict, ipa, mg
      3. 2906371Domain d7e2wc_: 7e2w C: [405171]
        automated match to d2qfwd_
        complexed with flc, gol, ict, ipa, mg
      4. 2906372Domain d7e2wd_: 7e2w D: [405150]
        automated match to d2qfwd_
        complexed with flc, gol, ict, ipa, mg
  15. 2906377Porphyromonas gingivalis [TaxId:431947] [368117] (2 PDB entries)
    1. Domains for 6iow:
      1. 2906378Domain d6iowa1: 6iow A:2-335 [368144]
        Other proteins in same PDB: d6iowa2, d6iowb2
        automated match to d2af4d_
      2. 2906379Domain d6iowb1: 6iow B:2-336 [368270]
        Other proteins in same PDB: d6iowa2, d6iowb2
        automated match to d2af4d_
    2. Domains for 6iox:
      1. 2906380Domain d6ioxa1: 6iox A:2-335 [368120]
        Other proteins in same PDB: d6ioxa2, d6ioxb2
        automated match to d2af4d_
        complexed with aco
      2. 2906381Domain d6ioxb1: 6iox B:2-334 [368118]
        Other proteins in same PDB: d6ioxa2, d6ioxb2
        automated match to d2af4d_
        complexed with aco
  16. 2906382Pseudomonas aeruginosa [TaxId:287] [356819] (1 PDB entry)
  17. 2906387Pseudomonas putida [TaxId:303] [225791] (2 PDB entries)
    1. Domains for 3flk:
      1. 2906388Domain d3flka_: 3flk A: [210005]
        automated match to d3udua_
        complexed with dtt, mg, nai, nh4, oxl, so4
      2. 2906389Domain d3flkb_: 3flk B: [210006]
        automated match to d3udua_
        complexed with dtt, mg, nai, nh4, oxl, so4
      3. 2906390Domain d3flkc_: 3flk C: [210007]
        automated match to d3udua_
        complexed with dtt, mg, nai, nh4, oxl, so4
      4. 2906391Domain d3flkd_: 3flk D: [210008]
        automated match to d3udua_
        complexed with dtt, mg, nai, nh4, oxl, so4
    2. Domain for 3fmx:
  18. 2906393Salmonella typhimurium [TaxId:99287] [187811] (1 PDB entry)
  19. 2906396Schizosaccharomyces pombe [TaxId:284812] [189802] (2 PDB entries)
    1. Domains for 3ty3:
      1. 2906399Domain d3ty3a_: 3ty3 A: [186003]
        automated match to d1wpwa_
        complexed with ggg, gol
      2. 2906400Domain d3ty3b_: 3ty3 B: [186004]
        automated match to d1wpwa_
        complexed with ggg, gol
    2. Domains for 3ty4:
      1. 2906397Domain d3ty4a_: 3ty4 A: [186005]
        automated match to d1wpwa_
        complexed with gol
      2. 2906398Domain d3ty4b_: 3ty4 B: [186006]
        automated match to d1wpwa_
        complexed with gol
  20. 2906401Sulfolobus tokodaii [TaxId:273063] [187622] (3 PDB entries)
    1. Domains for 2dht:
      1. 2906404Domain d2dhta_: 2dht A: [163638]
        automated match to d1ai2a_
      2. 2906405Domain d2dhtb_: 2dht B: [163639]
        automated match to d1ai2a_
    2. Domains for 2e0c:
      1. 2906402Domain d2e0ca_: 2e0c A: [163781]
        automated match to d1ai2a_
      2. 2906403Domain d2e0cb_: 2e0c B: [163782]
        automated match to d1ai2a_
    3. Domains for 2e5m:
      1. 2906406Domain d2e5ma_: 2e5m A: [163834]
        automated match to d1ai2a_
        complexed with nap
      2. 2906407Domain d2e5mb_: 2e5m B: [163835]
        automated match to d1ai2a_
        complexed with nap
  21. 2906408Thermococcus kodakarensis [TaxId:69014] [326937] (4 PDB entries)
    1. Domain for 5hn3:
    2. Domain for 5hn4:
    3. Domain for 5hn5:
    4. Domain for 5hn6:
  22. 2906413Thermotoga maritima [TaxId:243274] [188199] (1 PDB entry)
  23. 2906416Thermus thermophilus [TaxId:262724] [189625] (2 PDB entries)
    1. Domains for 3ah3:
      1. 2906417Domain d3ah3a_: 3ah3 A: [172162]
        automated match to d1wpwa_
        complexed with edo, so4
      2. 2906418Domain d3ah3b_: 3ah3 B: [172163]
        automated match to d1wpwa_
        complexed with edo, so4
      3. 2906419Domain d3ah3c_: 3ah3 C: [172164]
        automated match to d1wpwa_
        complexed with edo, so4
      4. 2906420Domain d3ah3d_: 3ah3 D: [172165]
        automated match to d1wpwa_
        complexed with edo, so4
    2. Domains for 4yb4:
      1. 2906421Domain d4yb4a_: 4yb4 A: [312293]
        automated match to d1x0la_
        complexed with 48y, gol, mg, nai, so4
      2. 2906422Domain d4yb4b_: 4yb4 B: [312041]
        automated match to d1x0la_
        complexed with 48y, gol, mg, nai, so4
      3. 2906423Domain d4yb4c_: 4yb4 C: [311927]
        automated match to d1x0la_
        complexed with 48y, gol, mg, nai, so4
      4. 2906424Domain d4yb4d_: 4yb4 D: [312026]
        automated match to d1x0la_
        complexed with 48y, gol, mg, nai, so4
  24. 2906425Thermus thermophilus [TaxId:274] [188105] (1 PDB entry)
  25. 2906428Xanthomonas campestris [TaxId:339] [399774] (2 PDB entries)
    1. Domain for 6ltf:
    2. Domains for 6m3s:
      1. 2906430Domain d6m3sa_: 6m3s A: [399935]
        Other proteins in same PDB: d6m3sb2
        automated match to d5grha_
        complexed with gol, ica, nad
      2. 2906431Domain d6m3sb1: 6m3s B:1-335 [400011]
        Other proteins in same PDB: d6m3sb2
        automated match to d5grha_
        complexed with gol, ica, nad

More info for Protein automated matches from c.77.1.0: automated matches

Timeline for Protein automated matches from c.77.1.0: automated matches: