Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2413226Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2479470Fold c.77: Isocitrate/Isopropylmalate dehydrogenase-like [53658] (1 superfamily)
    consists of two intertwined (sub)domains related by pseudo dyad; duplication
    3 layers: a/b/a; single mixed beta-sheet of 10 strands, order 213A945867 (A=10); strands from 5 to 9 are antiparallel to the rest
  4. 2479471Superfamily c.77.1: Isocitrate/Isopropylmalate dehydrogenase-like [53659] (6 families) (S)
    the constituent families form similar dimers
  5. 2479856Family c.77.1.0: automated matches [191423] (1 protein)
    not a true family
  6. 2479857Protein automated matches [190603] (19 species)
    not a true protein

Species:

  1. 2479858Aeropyrum pernix [TaxId:272557] [188121] (1 PDB entry)
  2. 2479861Aeropyrum pernix [TaxId:56636] [188025] (3 PDB entries)
    1. Domains for 1tyo:
      1. 2479862Domain d1tyoa_: 1tyo A: [161789]
        automated match to d1hqsa_
        complexed with enp
      2. 2479863Domain d1tyob_: 1tyo B: [161790]
        automated match to d1hqsa_
        complexed with enp
    2. Domains for 1v94:
      1. 2479864Domain d1v94a_: 1v94 A: [161837]
        automated match to d1hqsa_
      2. 2479865Domain d1v94b_: 1v94 B: [161838]
        automated match to d1hqsa_
    3. Domains for 1xgv:
      1. 2479866Domain d1xgva_: 1xgv A: [162074]
        automated match to d1hqsa_
      2. 2479867Domain d1xgvb_: 1xgv B: [162075]
        automated match to d1hqsa_
  3. 2479868Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [188333] (1 PDB entry)
  4. 2479885Burkholderia thailandensis [TaxId:271848] [269591] (1 PDB entry)
  5. 2479888Burkholderia xenovorans [TaxId:266265] [194800] (1 PDB entry)
  6. 2479890Clostridium thermocellum [TaxId:1515] [192994] (2 PDB entries)
    1. Domain for 4aou:
    2. Domains for 4aoy:
      1. 2479891Domain d4aoya_: 4aoy A: [192997]
        automated match to d2uxqa_
      2. 2479892Domain d4aoyb_: 4aoy B: [193001]
        automated match to d2uxqa_
      3. 2479893Domain d4aoyc_: 4aoy C: [192999]
        automated match to d2uxqa_
      4. 2479894Domain d4aoyd_: 4aoy D: [193004]
        automated match to d2uxqa_
  7. 2479896Desulfotalea psychrophila [TaxId:84980] [188344] (3 PDB entries)
    1. Domains for 2uxq:
      1. 2479897Domain d2uxqa_: 2uxq A: [168214]
        automated match to d1lwda_
        complexed with gol, mg, peg, so4
      2. 2479898Domain d2uxqb_: 2uxq B: [168215]
        automated match to d1lwda_
        complexed with gol, mg, peg, so4
      3. 2479899Domain d2uxqc_: 2uxq C: [168216]
        automated match to d1lwda_
        complexed with gol, mg, peg, so4
      4. 2479900Domain d2uxqd_: 2uxq D: [168217]
        automated match to d1lwda_
        complexed with gol, mg, peg, so4
    2. Domains for 2uxr:
      1. 2479902Domain d2uxra_: 2uxr A: [168218]
        automated match to d1lwda_
        complexed with gol, ict, mg
      2. 2479903Domain d2uxrb_: 2uxr B: [168219]
        automated match to d1lwda_
        complexed with gol, ict, mg
    3. Domain for 4aov:
  8. 2479904Human (Homo sapiens) [TaxId:9606] [329721] (6 PDB entries)
    1. Domains for 5gre:
      1. 2479909Domain d5grea_: 5gre A: [329797]
        automated match to d3blxo_
        complexed with adp, cit, mg
      2. 2479910Domain d5greb_: 5gre B: [329770]
        automated match to d3blxc_
        complexed with adp, cit, mg
    2. Domains for 5grf:
      1. 2479907Domain d5grfa_: 5grf A: [329811]
        automated match to d3blxo_
        complexed with adp, cit, mg; mutant
      2. 2479908Domain d5grfb_: 5grf B: [329729]
        automated match to d3blxc_
        complexed with adp, cit, mg; mutant
    3. Domains for 5grh:
      1. 2479913Domain d5grha_: 5grh A: [329722]
        automated match to d3blxo_
        complexed with mg
      2. 2479914Domain d5grhb_: 5grh B: [329776]
        automated match to d3blxc_
        complexed with mg
    4. Domains for 5gri:
      1. 2479905Domain d5gria_: 5gri A: [329759]
        automated match to d3blxo_
        complexed with cit, mg
      2. 2479906Domain d5grib_: 5gri B: [329750]
        automated match to d3blxc_
        complexed with cit, mg
    5. Domains for 5grl:
      1. 2479911Domain d5grla_: 5grl A: [329778]
        automated match to d3blxo_
        complexed with adp, ict, mg
      2. 2479912Domain d5grlb_: 5grl B: [329943]
        automated match to d3blxc_
        complexed with adp, ict, mg
    6. Domains for 5yvt:
      1. 3048904Domain d5yvtb_: 5yvt B: [348966]
        automated match to d3blxc_
        complexed with mg, nai
      2. 3048914Domain d5yvta_: 5yvt A: [348976]
        automated match to d3blxo_
        complexed with mg, nai
  9. 2479915Pseudomonas putida [TaxId:303] [225791] (2 PDB entries)
    1. Domains for 3flk:
      1. 2479916Domain d3flka_: 3flk A: [210005]
        automated match to d3udua_
        complexed with dtt, mg, nai, nh4, oxl, so4
      2. 2479917Domain d3flkb_: 3flk B: [210006]
        automated match to d3udua_
        complexed with dtt, mg, nai, nh4, oxl, so4
      3. 2479918Domain d3flkc_: 3flk C: [210007]
        automated match to d3udua_
        complexed with dtt, mg, nai, nh4, oxl, so4
      4. 2479919Domain d3flkd_: 3flk D: [210008]
        automated match to d3udua_
        complexed with dtt, mg, nai, nh4, oxl, so4
    2. Domain for 3fmx:
  10. 2479921Salmonella typhimurium [TaxId:99287] [187811] (1 PDB entry)
  11. 2479924Schizosaccharomyces pombe [TaxId:284812] [189802] (2 PDB entries)
    1. Domains for 3ty3:
      1. 2479927Domain d3ty3a_: 3ty3 A: [186003]
        automated match to d1wpwa_
        complexed with ggg, gol
      2. 2479928Domain d3ty3b_: 3ty3 B: [186004]
        automated match to d1wpwa_
        complexed with ggg, gol
    2. Domains for 3ty4:
      1. 2479925Domain d3ty4a_: 3ty4 A: [186005]
        automated match to d1wpwa_
        complexed with gol
      2. 2479926Domain d3ty4b_: 3ty4 B: [186006]
        automated match to d1wpwa_
        complexed with gol
  12. 2479929Sulfolobus tokodaii [TaxId:273063] [187622] (3 PDB entries)
    1. Domains for 2dht:
      1. 2479934Domain d2dhta_: 2dht A: [163638]
        automated match to d1ai2a_
      2. 2479935Domain d2dhtb_: 2dht B: [163639]
        automated match to d1ai2a_
    2. Domains for 2e0c:
      1. 2479930Domain d2e0ca_: 2e0c A: [163781]
        automated match to d1ai2a_
      2. 2479931Domain d2e0cb_: 2e0c B: [163782]
        automated match to d1ai2a_
    3. Domains for 2e5m:
      1. 2479932Domain d2e5ma_: 2e5m A: [163834]
        automated match to d1ai2a_
        complexed with nap
      2. 2479933Domain d2e5mb_: 2e5m B: [163835]
        automated match to d1ai2a_
        complexed with nap
  13. 2479936Thermococcus kodakarensis [TaxId:69014] [326937] (4 PDB entries)
    1. Domain for 5hn3:
    2. Domain for 5hn4:
    3. Domain for 5hn5:
    4. Domain for 5hn6:
  14. 2479941Thermotoga maritima [TaxId:243274] [188199] (1 PDB entry)
  15. 2479944Thermus thermophilus [TaxId:262724] [189625] (2 PDB entries)
    1. Domains for 3ah3:
      1. 2479945Domain d3ah3a_: 3ah3 A: [172162]
        automated match to d1wpwa_
        complexed with edo, so4
      2. 2479946Domain d3ah3b_: 3ah3 B: [172163]
        automated match to d1wpwa_
        complexed with edo, so4
      3. 2479947Domain d3ah3c_: 3ah3 C: [172164]
        automated match to d1wpwa_
        complexed with edo, so4
      4. 2479948Domain d3ah3d_: 3ah3 D: [172165]
        automated match to d1wpwa_
        complexed with edo, so4
    2. Domains for 4yb4:
      1. 2479949Domain d4yb4a_: 4yb4 A: [312293]
        automated match to d1x0la_
        complexed with 48y, gol, mg, nai, so4
      2. 2479950Domain d4yb4b_: 4yb4 B: [312041]
        automated match to d1x0la_
        complexed with 48y, gol, mg, nai, so4
      3. 2479951Domain d4yb4c_: 4yb4 C: [311927]
        automated match to d1x0la_
        complexed with 48y, gol, mg, nai, so4
      4. 2479952Domain d4yb4d_: 4yb4 D: [312026]
        automated match to d1x0la_
        complexed with 48y, gol, mg, nai, so4
  16. 2479953Thermus thermophilus [TaxId:274] [188105] (1 PDB entry)
  17. 3050159Legionella pneumophila [TaxId:272624] [350221] (1 PDB entry)
  18. 3055642Klebsiella pneumoniae [TaxId:72407] [355704] (1 PDB entry)
  19. 3056757Pseudomonas aeruginosa [TaxId:287] [356819] (1 PDB entry)

More info for Protein automated matches from c.77.1.0: automated matches

Timeline for Protein automated matches from c.77.1.0: automated matches: