Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2021373Class b: All beta proteins [48724] (177 folds)
  3. 2086376Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
    sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
    characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
  4. 2086604Superfamily b.121.4: Positive stranded ssRNA viruses [88633] (10 families) (S)
  5. 2087224Family b.121.4.9: Birnaviridae-like VP [141109] (2 proteins)
    dsRNA virus but unlike the other dsRNA viruses has a genomic arrangement and genomic replication strategy similar to +sRNA viruses; includes Pfam PF01766; Birnavirus VP2 protein
  6. 2087230Protein automated matches [190599] (2 species)
    not a true protein

Species:

  1. 2087231Avian infectious bursal disease virus [TaxId:10995] [255826] (1 PDB entry)
  2. 2087233Infectious bursal disease virus [TaxId:10995] [187617] (2 PDB entries)
    1. Domains for 2df7:
      1. 2087234Domain d2df7b_: 2df7 B: [131450]
        Other proteins in same PDB: d2df7a1
        automated match to d2gsya1
        complexed with ca, cl
      2. 2087235Domain d2df7c_: 2df7 C: [131451]
        Other proteins in same PDB: d2df7a1
        automated match to d2gsya1
        complexed with ca, cl
      3. 2087236Domain d2df7d_: 2df7 D: [131452]
        Other proteins in same PDB: d2df7a1
        automated match to d2gsya1
        complexed with ca, cl
      4. 2087237Domain d2df7e_: 2df7 E: [131453]
        Other proteins in same PDB: d2df7a1
        automated match to d2gsya1
        complexed with ca, cl
      5. 2087238Domain d2df7f_: 2df7 F: [131454]
        Other proteins in same PDB: d2df7a1
        automated match to d2gsya1
        complexed with ca, cl
      6. 2087239Domain d2df7g_: 2df7 G: [131455]
        Other proteins in same PDB: d2df7a1
        automated match to d2gsya1
        complexed with ca, cl
      7. 2087240Domain d2df7h_: 2df7 H: [131456]
        Other proteins in same PDB: d2df7a1
        automated match to d2gsya1
        complexed with ca, cl
      8. 2087241Domain d2df7i_: 2df7 I: [131457]
        Other proteins in same PDB: d2df7a1
        automated match to d2gsya1
        complexed with ca, cl
      9. 2087242Domain d2df7j_: 2df7 J: [131458]
        Other proteins in same PDB: d2df7a1
        automated match to d2gsya1
        complexed with ca, cl
      10. 2087243Domain d2df7k_: 2df7 K: [131459]
        Other proteins in same PDB: d2df7a1
        automated match to d2gsya1
        complexed with ca, cl
      11. 2087244Domain d2df7l_: 2df7 L: [131460]
        Other proteins in same PDB: d2df7a1
        automated match to d2gsya1
        complexed with ca, cl
      12. 2087245Domain d2df7m_: 2df7 M: [131461]
        Other proteins in same PDB: d2df7a1
        automated match to d2gsya1
        complexed with ca, cl
      13. 2087246Domain d2df7n_: 2df7 N: [131462]
        Other proteins in same PDB: d2df7a1
        automated match to d2gsya1
        complexed with ca, cl
      14. 2087247Domain d2df7o_: 2df7 O: [131463]
        Other proteins in same PDB: d2df7a1
        automated match to d2gsya1
        complexed with ca, cl
      15. 2087248Domain d2df7p_: 2df7 P: [131464]
        Other proteins in same PDB: d2df7a1
        automated match to d2gsya1
        complexed with ca, cl
      16. 2087249Domain d2df7q_: 2df7 Q: [131465]
        Other proteins in same PDB: d2df7a1
        automated match to d2gsya1
        complexed with ca, cl
      17. 2087250Domain d2df7r_: 2df7 R: [131466]
        Other proteins in same PDB: d2df7a1
        automated match to d2gsya1
        complexed with ca, cl
      18. 2087251Domain d2df7s_: 2df7 S: [131467]
        Other proteins in same PDB: d2df7a1
        automated match to d2gsya1
        complexed with ca, cl
      19. 2087252Domain d2df7t_: 2df7 T: [131468]
        Other proteins in same PDB: d2df7a1
        automated match to d2gsya1
        complexed with ca, cl
    2. Domains for 2gsy:
      1. 2087253Domain d2gsyb_: 2gsy B: [135600]
        Other proteins in same PDB: d2gsya1
        automated match to d2gsya1
        complexed with ca
      2. 2087254Domain d2gsyc_: 2gsy C: [135601]
        Other proteins in same PDB: d2gsya1
        automated match to d2gsya1
        complexed with ca
      3. 2087255Domain d2gsyd_: 2gsy D: [135602]
        Other proteins in same PDB: d2gsya1
        automated match to d2gsya1
        complexed with ca
      4. 2087256Domain d2gsye_: 2gsy E: [135603]
        Other proteins in same PDB: d2gsya1
        automated match to d2gsya1
        complexed with ca
      5. 2087257Domain d2gsyf_: 2gsy F: [135604]
        Other proteins in same PDB: d2gsya1
        automated match to d2gsya1
        complexed with ca
      6. 2087258Domain d2gsyg_: 2gsy G: [135605]
        Other proteins in same PDB: d2gsya1
        automated match to d2gsya1
        complexed with ca
      7. 2087259Domain d2gsyh_: 2gsy H: [135606]
        Other proteins in same PDB: d2gsya1
        automated match to d2gsya1
        complexed with ca
      8. 2087260Domain d2gsyi_: 2gsy I: [135607]
        Other proteins in same PDB: d2gsya1
        automated match to d2gsya1
        complexed with ca
      9. 2087261Domain d2gsyj_: 2gsy J: [135608]
        Other proteins in same PDB: d2gsya1
        automated match to d2gsya1
        complexed with ca
      10. 2087262Domain d2gsyk_: 2gsy K: [135609]
        Other proteins in same PDB: d2gsya1
        automated match to d2gsya1
        complexed with ca
      11. 2087263Domain d2gsyl_: 2gsy L: [135610]
        Other proteins in same PDB: d2gsya1
        automated match to d2gsya1
        complexed with ca
      12. 2087264Domain d2gsym_: 2gsy M: [135611]
        Other proteins in same PDB: d2gsya1
        automated match to d2gsya1
        complexed with ca
      13. 2087265Domain d2gsyn_: 2gsy N: [135612]
        Other proteins in same PDB: d2gsya1
        automated match to d2gsya1
        complexed with ca
      14. 2087266Domain d2gsyo_: 2gsy O: [135613]
        Other proteins in same PDB: d2gsya1
        automated match to d2gsya1
        complexed with ca
      15. 2087267Domain d2gsyp_: 2gsy P: [135614]
        Other proteins in same PDB: d2gsya1
        automated match to d2gsya1
        complexed with ca
      16. 2087268Domain d2gsyq_: 2gsy Q: [135615]
        Other proteins in same PDB: d2gsya1
        automated match to d2gsya1
        complexed with ca
      17. 2087269Domain d2gsyr_: 2gsy R: [135616]
        Other proteins in same PDB: d2gsya1
        automated match to d2gsya1
        complexed with ca
      18. 2087270Domain d2gsys_: 2gsy S: [135617]
        Other proteins in same PDB: d2gsya1
        automated match to d2gsya1
        complexed with ca
      19. 2087271Domain d2gsyt_: 2gsy T: [135618]
        Other proteins in same PDB: d2gsya1
        automated match to d2gsya1
        complexed with ca

More info for Protein automated matches from b.121.4.9: Birnaviridae-like VP

Timeline for Protein automated matches from b.121.4.9: Birnaviridae-like VP: