SCOPe 2.08: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.08
Class b: All beta proteins [48724] (180 folds)

Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies

Superfamily b.121.4: Positive stranded ssRNA viruses [88633] (10 families)

Family b.121.4.9: Birnaviridae-like VP [141109] (2 proteins)
dsRNA virus but unlike the other dsRNA viruses has a genomic arrangement and genomic replication strategy similar to +sRNA viruses; includes Pfam PF01766; Birnavirus VP2 protein

Protein automated matches [190599] (2 species)
not a true protein

Species:

Avian infectious bursal disease virus [TaxId:10995] [255826] (1 PDB entry)
- Domain for 3fbm:
  - Domain d3fbma_: 3fbm A: [246076]
    automated match to d2gsya1
    complexed with ca; mutant
Infectious bursal disease virus [TaxId:10995] [187617] (2 PDB entries)
1. Domains for 2df7:
  1. Domain d2df7b_: 2df7 B: [131450]
    Other proteins in same PDB: d2df7a1
    automated match to d2gsya1
    complexed with ca, cl
  2. Domain d2df7c_: 2df7 C: [131451]
    Other proteins in same PDB: d2df7a1
    automated match to d2gsya1
    complexed with ca, cl
  3. Domain d2df7d_: 2df7 D: [131452]
    Other proteins in same PDB: d2df7a1
    automated match to d2gsya1
    complexed with ca, cl
  4. Domain d2df7e_: 2df7 E: [131453]
    Other proteins in same PDB: d2df7a1
    automated match to d2gsya1
    complexed with ca, cl
  5. Domain d2df7f_: 2df7 F: [131454]
    Other proteins in same PDB: d2df7a1
    automated match to d2gsya1
    complexed with ca, cl
  6. Domain d2df7g_: 2df7 G: [131455]
    Other proteins in same PDB: d2df7a1
    automated match to d2gsya1
    complexed with ca, cl
  7. Domain d2df7h_: 2df7 H: [131456]
    Other proteins in same PDB: d2df7a1
    automated match to d2gsya1
    complexed with ca, cl
  8. Domain d2df7i_: 2df7 I: [131457]
    Other proteins in same PDB: d2df7a1
    automated match to d2gsya1
    complexed with ca, cl
  9. Domain d2df7j_: 2df7 J: [131458]
    Other proteins in same PDB: d2df7a1
    automated match to d2gsya1
    complexed with ca, cl
  10. Domain d2df7k_: 2df7 K: [131459]
    Other proteins in same PDB: d2df7a1
    automated match to d2gsya1
    complexed with ca, cl
  11. Domain d2df7l_: 2df7 L: [131460]
    Other proteins in same PDB: d2df7a1
    automated match to d2gsya1
    complexed with ca, cl
  12. Domain d2df7m_: 2df7 M: [131461]
    Other proteins in same PDB: d2df7a1
    automated match to d2gsya1
    complexed with ca, cl
  13. Domain d2df7n_: 2df7 N: [131462]
    Other proteins in same PDB: d2df7a1
    automated match to d2gsya1
    complexed with ca, cl
  14. Domain d2df7o_: 2df7 O: [131463]
    Other proteins in same PDB: d2df7a1
    automated match to d2gsya1
    complexed with ca, cl
  15. Domain d2df7p_: 2df7 P: [131464]
    Other proteins in same PDB: d2df7a1
    automated match to d2gsya1
    complexed with ca, cl
  16. Domain d2df7q_: 2df7 Q: [131465]
    Other proteins in same PDB: d2df7a1
    automated match to d2gsya1
    complexed with ca, cl
  17. Domain d2df7r_: 2df7 R: [131466]
    Other proteins in same PDB: d2df7a1
    automated match to d2gsya1
    complexed with ca, cl
  18. Domain d2df7s_: 2df7 S: [131467]
    Other proteins in same PDB: d2df7a1
    automated match to d2gsya1
    complexed with ca, cl
  19. Domain d2df7t_: 2df7 T: [131468]
    Other proteins in same PDB: d2df7a1
    automated match to d2gsya1
    complexed with ca, cl
2. Domains for 2gsy:
  1. Domain d2gsyb_: 2gsy B: [135600]
    Other proteins in same PDB: d2gsya1
    automated match to d2gsya1
    complexed with ca
  2. Domain d2gsyc_: 2gsy C: [135601]
    Other proteins in same PDB: d2gsya1
    automated match to d2gsya1
    complexed with ca
  3. Domain d2gsyd_: 2gsy D: [135602]
    Other proteins in same PDB: d2gsya1
    automated match to d2gsya1
    complexed with ca
  4. Domain d2gsye_: 2gsy E: [135603]
    Other proteins in same PDB: d2gsya1
    automated match to d2gsya1
    complexed with ca
  5. Domain d2gsyf_: 2gsy F: [135604]
    Other proteins in same PDB: d2gsya1
    automated match to d2gsya1
    complexed with ca
  6. Domain d2gsyg_: 2gsy G: [135605]
    Other proteins in same PDB: d2gsya1
    automated match to d2gsya1
    complexed with ca
  7. Domain d2gsyh_: 2gsy H: [135606]
    Other proteins in same PDB: d2gsya1
    automated match to d2gsya1
    complexed with ca
  8. Domain d2gsyi_: 2gsy I: [135607]
    Other proteins in same PDB: d2gsya1
    automated match to d2gsya1
    complexed with ca
  9. Domain d2gsyj_: 2gsy J: [135608]
    Other proteins in same PDB: d2gsya1
    automated match to d2gsya1
    complexed with ca
  10. Domain d2gsyk_: 2gsy K: [135609]
    Other proteins in same PDB: d2gsya1
    automated match to d2gsya1
    complexed with ca
  11. Domain d2gsyl_: 2gsy L: [135610]
    Other proteins in same PDB: d2gsya1
    automated match to d2gsya1
    complexed with ca
  12. Domain d2gsym_: 2gsy M: [135611]
    Other proteins in same PDB: d2gsya1
    automated match to d2gsya1
    complexed with ca
  13. Domain d2gsyn_: 2gsy N: [135612]
    Other proteins in same PDB: d2gsya1
    automated match to d2gsya1
    complexed with ca
  14. Domain d2gsyo_: 2gsy O: [135613]
    Other proteins in same PDB: d2gsya1
    automated match to d2gsya1
    complexed with ca
  15. Domain d2gsyp_: 2gsy P: [135614]
    Other proteins in same PDB: d2gsya1
    automated match to d2gsya1
    complexed with ca
  16. Domain d2gsyq_: 2gsy Q: [135615]
    Other proteins in same PDB: d2gsya1
    automated match to d2gsya1
    complexed with ca
  17. Domain d2gsyr_: 2gsy R: [135616]
    Other proteins in same PDB: d2gsya1
    automated match to d2gsya1
    complexed with ca
  18. Domain d2gsys_: 2gsy S: [135617]
    Other proteins in same PDB: d2gsya1
    automated match to d2gsya1
    complexed with ca
  19. Domain d2gsyt_: 2gsy T: [135618]
    Other proteins in same PDB: d2gsya1
    automated match to d2gsya1
    complexed with ca

More info for Protein automated matches from b.121.4.9: Birnaviridae-like VP

Timeline for Protein automated matches from b.121.4.9: Birnaviridae-like VP:

Protein automated matches from b.121.4.9: Birnaviridae-like VP first appeared in SCOPe 2.01
Protein automated matches from b.121.4.9: Birnaviridae-like VP appears in SCOPe 2.07