Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2413226Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2492060Fold c.110: DTD-like [69499] (1 superfamily)
    beta(2)-(alpha-beta)2-beta(3); 3 layers, a/b/b; some topological similarity to the N-terminal domain of MinC
  4. 2492061Superfamily c.110.1: DTD-like [69500] (3 families) (S)
    active form is a dimer
  5. 2492108Family c.110.1.0: automated matches [191422] (1 protein)
    not a true family
  6. 2492109Protein automated matches [190596] (6 species)
    not a true protein

Species:

  1. 2492110Aeropyrum pernix [TaxId:272557] [311433] (14 PDB entries)
    1. Domain for 4rr6:
    2. Domain for 4rr7:
    3. Domain for 4rr8:
    4. Domain for 4rr9:
    5. Domain for 4rra:
    6. Domain for 4rrb:
    7. Domain for 4rrc:
    8. Domain for 4rrd:
    9. Domain for 4rrh:
    10. Domain for 4rri:
    11. Domain for 4rrj:
    12. Domain for 4rrk:
    13. Domain for 4rrl:
    14. Domain for 4rrm:
  2. 2492125Aquifex aeolicus [TaxId:224324] [187612] (1 PDB entry)
  3. 2492127Human (Homo sapiens) [TaxId:9606] [255528] (1 PDB entry)
  4. 2492132Methanocaldococcus jannaschii [TaxId:243232] [311434] (2 PDB entries)
    1. Domains for 4rrf:
      1. 2492133Domain d4rrfa_: 4rrf A: [309498]
        automated match to d1y2qa_
        complexed with a3s, cl, mg
      2. 2492134Domain d4rrfb_: 4rrf B: [309499]
        automated match to d1y2qa_
        complexed with a3s, cl, mg
      3. 2492135Domain d4rrfc_: 4rrf C: [309500]
        automated match to d1y2qa_
        complexed with a3s, cl, mg
      4. 2492136Domain d4rrfd_: 4rrf D: [309501]
        automated match to d1y2qa_
        complexed with a3s, cl, mg
      5. 2492137Domain d4rrfe_: 4rrf E: [309502]
        automated match to d1y2qa_
        complexed with a3s, cl, mg
      6. 2492138Domain d4rrff_: 4rrf F: [309503]
        automated match to d1y2qa_
        complexed with a3s, cl, mg
    2. Domains for 4rrg:
      1. 2492139Domain d4rrga_: 4rrg A: [309504]
        automated match to d1y2qa_
        complexed with a3t
      2. 2492140Domain d4rrgb_: 4rrg B: [309505]
        automated match to d1y2qa_
        complexed with a3t
      3. 2492141Domain d4rrgc_: 4rrg C: [309506]
        automated match to d1y2qa_
        complexed with a3t
      4. 2492142Domain d4rrgd_: 4rrg D: [309507]
        automated match to d1y2qa_
        complexed with a3t
  5. 2492143Plasmodium falciparum [TaxId:36329] [196467] (14 PDB entries)
    1. Domains for 3knf:
      1. 2492174Domain d3knfa_: 3knf A: [247241]
        automated match to d4nbia_
      2. 2492175Domain d3knfb_: 3knf B: [247242]
        automated match to d4nbia_
      3. 2492176Domain d3knfc_: 3knf C: [247243]
        automated match to d4nbia_
      4. 2492177Domain d3knfd_: 3knf D: [247244]
        automated match to d4nbia_
      5. 2492178Domain d3knfe_: 3knf E: [247245]
        automated match to d4nbia_
      6. 2492179Domain d3knff_: 3knf F: [247246]
        automated match to d4nbia_
    2. Domains for 3ko3:
      1. 2492204Domain d3ko3a_: 3ko3 A: [212433]
        automated match to d3lmvf_
        protein/RNA complex; complexed with adp
      2. 2492205Domain d3ko3b_: 3ko3 B: [212434]
        automated match to d3lmvf_
        protein/RNA complex; complexed with adp
      3. 2492206Domain d3ko3c_: 3ko3 C: [212435]
        automated match to d3lmvf_
        protein/RNA complex; complexed with adp
      4. 2492207Domain d3ko3d_: 3ko3 D: [212436]
        automated match to d3lmvf_
        protein/RNA complex; complexed with adp
      5. 2492208Domain d3ko3e_: 3ko3 E: [212437]
        automated match to d3lmvf_
        protein/RNA complex; complexed with adp
      6. 2492209Domain d3ko3f_: 3ko3 F: [212438]
        automated match to d3lmvf_
        protein/RNA complex; complexed with adp
    3. Domains for 3ko4:
      1. 2492186Domain d3ko4a_: 3ko4 A: [212439]
        automated match to d3lmvf_
        protein/RNA complex; complexed with adp
      2. 2492187Domain d3ko4b_: 3ko4 B: [212440]
        automated match to d3lmvf_
        protein/RNA complex; complexed with adp
      3. 2492188Domain d3ko4c_: 3ko4 C: [212441]
        automated match to d3lmvf_
        protein/RNA complex; complexed with adp
      4. 2492189Domain d3ko4d_: 3ko4 D: [212442]
        automated match to d3lmvf_
        protein/RNA complex; complexed with adp
      5. 2492190Domain d3ko4e_: 3ko4 E: [212443]
        automated match to d3lmvf_
        protein/RNA complex; complexed with adp
      6. 2492191Domain d3ko4f_: 3ko4 F: [212444]
        automated match to d3lmvf_
        protein/RNA complex; complexed with adp
    4. Domains for 3ko5:
      1. 2492146Domain d3ko5a_: 3ko5 A: [212445]
        automated match to d3lmvf_
        protein/RNA complex; complexed with adp
      2. 2492147Domain d3ko5b_: 3ko5 B: [212446]
        automated match to d3lmvf_
        protein/RNA complex; complexed with adp
      3. 2492148Domain d3ko5c_: 3ko5 C: [212447]
        automated match to d3lmvf_
        protein/RNA complex; complexed with adp
      4. 2492149Domain d3ko5d_: 3ko5 D: [212448]
        automated match to d3lmvf_
        protein/RNA complex; complexed with adp
      5. 2492150Domain d3ko5e_: 3ko5 E: [212449]
        automated match to d3lmvf_
        protein/RNA complex; complexed with adp
      6. 2492151Domain d3ko5f_: 3ko5 F: [212450]
        automated match to d3lmvf_
        protein/RNA complex; complexed with adp
    5. Domains for 3ko7:
      1. 2492168Domain d3ko7a_: 3ko7 A: [212451]
        automated match to d3lmvf_
        complexed with dly
      2. 2492169Domain d3ko7b_: 3ko7 B: [212452]
        automated match to d3lmvf_
        complexed with dly
      3. 2492170Domain d3ko7c_: 3ko7 C: [212453]
        automated match to d3lmvf_
        complexed with dly
      4. 2492171Domain d3ko7d_: 3ko7 D: [212454]
        automated match to d3lmvf_
        complexed with dly
      5. 2492172Domain d3ko7e_: 3ko7 E: [212455]
        automated match to d3lmvf_
        complexed with dly
      6. 2492173Domain d3ko7f_: 3ko7 F: [212456]
        automated match to d3lmvf_
        complexed with dly
    6. Domains for 3ko9:
      1. 2492198Domain d3ko9a_: 3ko9 A: [212457]
        automated match to d3lmvf_
        complexed with dar
      2. 2492199Domain d3ko9b_: 3ko9 B: [212458]
        automated match to d3lmvf_
        complexed with dar
      3. 2492200Domain d3ko9c_: 3ko9 C: [212459]
        automated match to d3lmvf_
        complexed with dar
      4. 2492201Domain d3ko9d_: 3ko9 D: [212460]
        automated match to d3lmvf_
        complexed with dar
      5. 2492202Domain d3ko9e_: 3ko9 E: [212461]
        automated match to d3lmvf_
        complexed with dar
      6. 2492203Domain d3ko9f_: 3ko9 F: [212462]
        automated match to d3lmvf_
        complexed with dar
    7. Domains for 3kob:
      1. 2492222Domain d3koba_: 3kob A: [212463]
        automated match to d3lmvf_
        complexed with dgl
      2. 2492223Domain d3kobb_: 3kob B: [212464]
        automated match to d3lmvf_
        complexed with dgl
      3. 2492224Domain d3kobc_: 3kob C: [212465]
        automated match to d3lmvf_
        complexed with dgl
      4. 2492225Domain d3kobd_: 3kob D: [212466]
        automated match to d3lmvf_
        complexed with dgl
      5. 2492226Domain d3kobe_: 3kob E: [212467]
        automated match to d3lmvf_
        complexed with dgl
      6. 2492227Domain d3kobf_: 3kob F: [212468]
        automated match to d3lmvf_
        complexed with dgl
    8. Domains for 3koc:
      1. 2492210Domain d3koca_: 3koc A: [212469]
        automated match to d3lmvf_
        complexed with dhi
      2. 2492211Domain d3kocb_: 3koc B: [212470]
        automated match to d3lmvf_
        complexed with dhi
      3. 2492212Domain d3kocc_: 3koc C: [212471]
        automated match to d3lmvf_
        complexed with dhi
      4. 2492213Domain d3kocd_: 3koc D: [212472]
        automated match to d3lmvf_
        complexed with dhi
      5. 2492214Domain d3koce_: 3koc E: [212473]
        automated match to d3lmvf_
        complexed with dhi
      6. 2492215Domain d3kocf_: 3koc F: [212474]
        automated match to d3lmvf_
        complexed with dhi
    9. Domains for 3kod:
      1. 2492216Domain d3koda_: 3kod A: [247247]
        automated match to d4nbia_
        complexed with dsn
      2. 2492217Domain d3kodb_: 3kod B: [247248]
        automated match to d4nbia_
        complexed with dsn
      3. 2492218Domain d3kodc_: 3kod C: [247249]
        automated match to d4nbia_
        complexed with dsn
      4. 2492219Domain d3kodd_: 3kod D: [247250]
        automated match to d4nbia_
        complexed with dsn
      5. 2492220Domain d3kode_: 3kod E: [247251]
        automated match to d4nbia_
        complexed with dsn
      6. 2492221Domain d3kodf_: 3kod F: [247252]
        automated match to d4nbia_
        complexed with dsn
    10. Domains for 3lmt:
      1. 2492180Domain d3lmta_: 3lmt A: [212938]
        automated match to d3lmvf_
        complexed with iod
      2. 2492181Domain d3lmtb_: 3lmt B: [212939]
        automated match to d3lmvf_
        complexed with iod
      3. 2492182Domain d3lmtc_: 3lmt C: [212940]
        automated match to d3lmvf_
        complexed with iod
      4. 2492183Domain d3lmtd_: 3lmt D: [212941]
        automated match to d3lmvf_
        complexed with iod
      5. 2492184Domain d3lmte_: 3lmt E: [212942]
        automated match to d3lmvf_
        complexed with iod
      6. 2492185Domain d3lmtf_: 3lmt F: [212943]
        automated match to d3lmvf_
        complexed with iod
    11. Domains for 3lmv:
      1. 2492192Domain d3lmva_: 3lmv A: [199747]
        automated match to d3lmvf_
        protein/RNA complex; complexed with epe, so3
      2. 2492193Domain d3lmvb_: 3lmv B: [199748]
        automated match to d3lmvf_
        protein/RNA complex; complexed with epe, so3
      3. 2492194Domain d3lmvc_: 3lmv C: [199749]
        automated match to d3lmvf_
        protein/RNA complex; complexed with epe, so3
      4. 2492195Domain d3lmvd_: 3lmv D: [199750]
        automated match to d3lmvf_
        protein/RNA complex; complexed with epe, so3
      5. 2492196Domain d3lmve_: 3lmv E: [199751]
        automated match to d3lmvf_
        protein/RNA complex; complexed with epe, so3
      6. 2492197Domain d3lmvf_: 3lmv F: [196468]
        automated match to d2dboa_
        protein/RNA complex; complexed with epe, so3
    12. Domains for 4nbi:
      1. 2492144Domain d4nbia_: 4nbi A: [229940]
        automated match to d3ko5c_
        protein/RNA complex; complexed with d3y, pge
      2. 2492145Domain d4nbib_: 4nbi B: [229941]
        automated match to d3ko3d_
        protein/RNA complex; complexed with d3y, pge
    13. Domains for 4nbj:
      1. 2492160Domain d4nbja_: 4nbj A: [229942]
        automated match to d3ko3d_
        protein/RNA complex; complexed with d3y
      2. 2492161Domain d4nbjb_: 4nbj B: [229943]
        automated match to d3ko3e_
        protein/RNA complex; complexed with d3y
      3. 2492162Domain d4nbjc_: 4nbj C: [229944]
        automated match to d3ko3d_
        protein/RNA complex; complexed with d3y
      4. 2492163Domain d4nbjd_: 4nbj D: [229945]
        automated match to d3ko3e_
        protein/RNA complex; complexed with d3y
      5. 2492164Domain d4nbje_: 4nbj E: [229946]
        automated match to d3ko3d_
        protein/RNA complex; complexed with d3y
      6. 2492165Domain d4nbjf_: 4nbj F: [229947]
        automated match to d3ko3e_
        protein/RNA complex; complexed with d3y
      7. 2492166Domain d4nbjg_: 4nbj G: [229948]
        automated match to d3ko3e_
        protein/RNA complex; complexed with d3y
      8. 2492167Domain d4nbjh_: 4nbj H: [229949]
        automated match to d3ko3d_
        protein/RNA complex; complexed with d3y
    14. Domains for 5j61:
      1. 2492152Domain d5j61a_: 5j61 A: [344280]
        automated match to d4nbia_
        protein/RNA complex; complexed with a3g
      2. 2492153Domain d5j61b_: 5j61 B: [323097]
        automated match to d4nbia_
        protein/RNA complex; complexed with a3g
      3. 2492154Domain d5j61c_: 5j61 C: [344281]
        automated match to d4nbia_
        protein/RNA complex; complexed with a3g
      4. 2492155Domain d5j61d_: 5j61 D: [344282]
        automated match to d4nbia_
        protein/RNA complex; complexed with a3g
      5. 2492156Domain d5j61e_: 5j61 E: [344283]
        automated match to d4nbia_
        protein/RNA complex; complexed with a3g
      6. 2492157Domain d5j61f_: 5j61 F: [323090]
        automated match to d4nbia_
        protein/RNA complex; complexed with a3g
      7. 2492158Domain d5j61g_: 5j61 G: [344284]
        automated match to d4nbia_
        protein/RNA complex; complexed with a3g
      8. 2492159Domain d5j61h_: 5j61 H: [344285]
        automated match to d4nbia_
        protein/RNA complex; complexed with a3g
  6. 3048419Mus musculus [TaxId:10090] [348481] (1 PDB entry)

More info for Protein automated matches from c.110.1.0: automated matches

Timeline for Protein automated matches from c.110.1.0: automated matches: