Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2149822Fold c.110: DTD-like [69499] (1 superfamily)
    beta(2)-(alpha-beta)2-beta(3); 3 layers, a/b/b; some topological similarity to the N-terminal domain of MinC
  4. 2149823Superfamily c.110.1: DTD-like [69500] (3 families) (S)
    active form is a dimer
  5. 2149870Family c.110.1.0: automated matches [191422] (1 protein)
    not a true family
  6. 2149871Protein automated matches [190596] (5 species)
    not a true protein

Species:

  1. 2149872Aeropyrum pernix [TaxId:272557] [311433] (14 PDB entries)
    1. Domain for 4rr6:
    2. Domain for 4rr7:
    3. Domain for 4rr8:
    4. Domain for 4rr9:
    5. Domain for 4rra:
    6. Domain for 4rrb:
    7. Domain for 4rrc:
    8. Domain for 4rrd:
    9. Domain for 4rrh:
    10. Domain for 4rri:
    11. Domain for 4rrj:
    12. Domain for 4rrk:
    13. Domain for 4rrl:
    14. Domain for 4rrm:
  2. 2149887Aquifex aeolicus [TaxId:224324] [187612] (1 PDB entry)
  3. 2149889Human (Homo sapiens) [TaxId:9606] [255528] (1 PDB entry)
  4. 2149894Methanocaldococcus jannaschii [TaxId:243232] [311434] (2 PDB entries)
    1. Domains for 4rrf:
      1. 2149895Domain d4rrfa_: 4rrf A: [309498]
        automated match to d1y2qa_
        complexed with a3s, cl, mg
      2. 2149896Domain d4rrfb_: 4rrf B: [309499]
        automated match to d1y2qa_
        complexed with a3s, cl, mg
      3. 2149897Domain d4rrfc_: 4rrf C: [309500]
        automated match to d1y2qa_
        complexed with a3s, cl, mg
      4. 2149898Domain d4rrfd_: 4rrf D: [309501]
        automated match to d1y2qa_
        complexed with a3s, cl, mg
      5. 2149899Domain d4rrfe_: 4rrf E: [309502]
        automated match to d1y2qa_
        complexed with a3s, cl, mg
      6. 2149900Domain d4rrff_: 4rrf F: [309503]
        automated match to d1y2qa_
        complexed with a3s, cl, mg
    2. Domains for 4rrg:
      1. 2149901Domain d4rrga_: 4rrg A: [309504]
        automated match to d1y2qa_
        complexed with a3t
      2. 2149902Domain d4rrgb_: 4rrg B: [309505]
        automated match to d1y2qa_
        complexed with a3t
      3. 2149903Domain d4rrgc_: 4rrg C: [309506]
        automated match to d1y2qa_
        complexed with a3t
      4. 2149904Domain d4rrgd_: 4rrg D: [309507]
        automated match to d1y2qa_
        complexed with a3t
  5. 2149905Plasmodium falciparum [TaxId:36329] [196467] (14 PDB entries)
    1. Domains for 3knf:
      1. 2149958Domain d3knfa_: 3knf A: [247241]
        automated match to d4nbia_
      2. 2149959Domain d3knfb_: 3knf B: [247242]
        automated match to d4nbia_
      3. 2149960Domain d3knfc_: 3knf C: [247243]
        automated match to d4nbia_
      4. 2149961Domain d3knfd_: 3knf D: [247244]
        automated match to d4nbia_
      5. 2149962Domain d3knfe_: 3knf E: [247245]
        automated match to d4nbia_
      6. 2149963Domain d3knff_: 3knf F: [247246]
        automated match to d4nbia_
    2. Domains for 3ko3:
      1. 2149934Domain d3ko3a_: 3ko3 A: [212433]
        automated match to d3lmvf_
        protein/RNA complex; complexed with adp
      2. 2149935Domain d3ko3b_: 3ko3 B: [212434]
        automated match to d3lmvf_
        protein/RNA complex; complexed with adp
      3. 2149936Domain d3ko3c_: 3ko3 C: [212435]
        automated match to d3lmvf_
        protein/RNA complex; complexed with adp
      4. 2149937Domain d3ko3d_: 3ko3 D: [212436]
        automated match to d3lmvf_
        protein/RNA complex; complexed with adp
      5. 2149938Domain d3ko3e_: 3ko3 E: [212437]
        automated match to d3lmvf_
        protein/RNA complex; complexed with adp
      6. 2149939Domain d3ko3f_: 3ko3 F: [212438]
        automated match to d3lmvf_
        protein/RNA complex; complexed with adp
    3. Domains for 3ko4:
      1. 2149964Domain d3ko4a_: 3ko4 A: [212439]
        automated match to d3lmvf_
        protein/RNA complex; complexed with adp
      2. 2149965Domain d3ko4b_: 3ko4 B: [212440]
        automated match to d3lmvf_
        protein/RNA complex; complexed with adp
      3. 2149966Domain d3ko4c_: 3ko4 C: [212441]
        automated match to d3lmvf_
        protein/RNA complex; complexed with adp
      4. 2149967Domain d3ko4d_: 3ko4 D: [212442]
        automated match to d3lmvf_
        protein/RNA complex; complexed with adp
      5. 2149968Domain d3ko4e_: 3ko4 E: [212443]
        automated match to d3lmvf_
        protein/RNA complex; complexed with adp
      6. 2149969Domain d3ko4f_: 3ko4 F: [212444]
        automated match to d3lmvf_
        protein/RNA complex; complexed with adp
    4. Domains for 3ko5:
      1. 2149908Domain d3ko5a_: 3ko5 A: [212445]
        automated match to d3lmvf_
        protein/RNA complex; complexed with adp
      2. 2149909Domain d3ko5b_: 3ko5 B: [212446]
        automated match to d3lmvf_
        protein/RNA complex; complexed with adp
      3. 2149910Domain d3ko5c_: 3ko5 C: [212447]
        automated match to d3lmvf_
        protein/RNA complex; complexed with adp
      4. 2149911Domain d3ko5d_: 3ko5 D: [212448]
        automated match to d3lmvf_
        protein/RNA complex; complexed with adp
      5. 2149912Domain d3ko5e_: 3ko5 E: [212449]
        automated match to d3lmvf_
        protein/RNA complex; complexed with adp
      6. 2149913Domain d3ko5f_: 3ko5 F: [212450]
        automated match to d3lmvf_
        protein/RNA complex; complexed with adp
    5. Domains for 3ko7:
      1. 2149914Domain d3ko7a_: 3ko7 A: [212451]
        automated match to d3lmvf_
        complexed with dly
      2. 2149915Domain d3ko7b_: 3ko7 B: [212452]
        automated match to d3lmvf_
        complexed with dly
      3. 2149916Domain d3ko7c_: 3ko7 C: [212453]
        automated match to d3lmvf_
        complexed with dly
      4. 2149917Domain d3ko7d_: 3ko7 D: [212454]
        automated match to d3lmvf_
        complexed with dly
      5. 2149918Domain d3ko7e_: 3ko7 E: [212455]
        automated match to d3lmvf_
        complexed with dly
      6. 2149919Domain d3ko7f_: 3ko7 F: [212456]
        automated match to d3lmvf_
        complexed with dly
    6. Domains for 3ko9:
      1. 2149940Domain d3ko9a_: 3ko9 A: [212457]
        automated match to d3lmvf_
        complexed with dar
      2. 2149941Domain d3ko9b_: 3ko9 B: [212458]
        automated match to d3lmvf_
        complexed with dar
      3. 2149942Domain d3ko9c_: 3ko9 C: [212459]
        automated match to d3lmvf_
        complexed with dar
      4. 2149943Domain d3ko9d_: 3ko9 D: [212460]
        automated match to d3lmvf_
        complexed with dar
      5. 2149944Domain d3ko9e_: 3ko9 E: [212461]
        automated match to d3lmvf_
        complexed with dar
      6. 2149945Domain d3ko9f_: 3ko9 F: [212462]
        automated match to d3lmvf_
        complexed with dar
    7. Domains for 3kob:
      1. 2149976Domain d3koba_: 3kob A: [212463]
        automated match to d3lmvf_
        complexed with dgl
      2. 2149977Domain d3kobb_: 3kob B: [212464]
        automated match to d3lmvf_
        complexed with dgl
      3. 2149978Domain d3kobc_: 3kob C: [212465]
        automated match to d3lmvf_
        complexed with dgl
      4. 2149979Domain d3kobd_: 3kob D: [212466]
        automated match to d3lmvf_
        complexed with dgl
      5. 2149980Domain d3kobe_: 3kob E: [212467]
        automated match to d3lmvf_
        complexed with dgl
      6. 2149981Domain d3kobf_: 3kob F: [212468]
        automated match to d3lmvf_
        complexed with dgl
    8. Domains for 3koc:
      1. 2149952Domain d3koca_: 3koc A: [212469]
        automated match to d3lmvf_
        complexed with dhi
      2. 2149953Domain d3kocb_: 3koc B: [212470]
        automated match to d3lmvf_
        complexed with dhi
      3. 2149954Domain d3kocc_: 3koc C: [212471]
        automated match to d3lmvf_
        complexed with dhi
      4. 2149955Domain d3kocd_: 3koc D: [212472]
        automated match to d3lmvf_
        complexed with dhi
      5. 2149956Domain d3koce_: 3koc E: [212473]
        automated match to d3lmvf_
        complexed with dhi
      6. 2149957Domain d3kocf_: 3koc F: [212474]
        automated match to d3lmvf_
        complexed with dhi
    9. Domains for 3kod:
      1. 2149970Domain d3koda_: 3kod A: [247247]
        automated match to d4nbia_
        complexed with dsn
      2. 2149971Domain d3kodb_: 3kod B: [247248]
        automated match to d4nbia_
        complexed with dsn
      3. 2149972Domain d3kodc_: 3kod C: [247249]
        automated match to d4nbia_
        complexed with dsn
      4. 2149973Domain d3kodd_: 3kod D: [247250]
        automated match to d4nbia_
        complexed with dsn
      5. 2149974Domain d3kode_: 3kod E: [247251]
        automated match to d4nbia_
        complexed with dsn
      6. 2149975Domain d3kodf_: 3kod F: [247252]
        automated match to d4nbia_
        complexed with dsn
    10. Domains for 3lmt:
      1. 2149928Domain d3lmta_: 3lmt A: [212938]
        automated match to d3lmvf_
        complexed with iod
      2. 2149929Domain d3lmtb_: 3lmt B: [212939]
        automated match to d3lmvf_
        complexed with iod
      3. 2149930Domain d3lmtc_: 3lmt C: [212940]
        automated match to d3lmvf_
        complexed with iod
      4. 2149931Domain d3lmtd_: 3lmt D: [212941]
        automated match to d3lmvf_
        complexed with iod
      5. 2149932Domain d3lmte_: 3lmt E: [212942]
        automated match to d3lmvf_
        complexed with iod
      6. 2149933Domain d3lmtf_: 3lmt F: [212943]
        automated match to d3lmvf_
        complexed with iod
    11. Domains for 3lmv:
      1. 2149946Domain d3lmva_: 3lmv A: [199747]
        automated match to d3lmvf_
        protein/RNA complex; complexed with epe, so3
      2. 2149947Domain d3lmvb_: 3lmv B: [199748]
        automated match to d3lmvf_
        protein/RNA complex; complexed with epe, so3
      3. 2149948Domain d3lmvc_: 3lmv C: [199749]
        automated match to d3lmvf_
        protein/RNA complex; complexed with epe, so3
      4. 2149949Domain d3lmvd_: 3lmv D: [199750]
        automated match to d3lmvf_
        protein/RNA complex; complexed with epe, so3
      5. 2149950Domain d3lmve_: 3lmv E: [199751]
        automated match to d3lmvf_
        protein/RNA complex; complexed with epe, so3
      6. 2149951Domain d3lmvf_: 3lmv F: [196468]
        automated match to d2dboa_
        protein/RNA complex; complexed with epe, so3
    12. Domains for 4nbi:
      1. 2149906Domain d4nbia_: 4nbi A: [229940]
        automated match to d3ko5c_
        protein/RNA complex; complexed with d3y, pge
      2. 2149907Domain d4nbib_: 4nbi B: [229941]
        automated match to d3ko3d_
        protein/RNA complex; complexed with d3y, pge
    13. Domains for 4nbj:
      1. 2149920Domain d4nbja_: 4nbj A: [229942]
        automated match to d3ko3d_
        protein/RNA complex; complexed with d3y
      2. 2149921Domain d4nbjb_: 4nbj B: [229943]
        automated match to d3ko3e_
        protein/RNA complex; complexed with d3y
      3. 2149922Domain d4nbjc_: 4nbj C: [229944]
        automated match to d3ko3d_
        protein/RNA complex; complexed with d3y
      4. 2149923Domain d4nbjd_: 4nbj D: [229945]
        automated match to d3ko3e_
        protein/RNA complex; complexed with d3y
      5. 2149924Domain d4nbje_: 4nbj E: [229946]
        automated match to d3ko3d_
        protein/RNA complex; complexed with d3y
      6. 2149925Domain d4nbjf_: 4nbj F: [229947]
        automated match to d3ko3e_
        protein/RNA complex; complexed with d3y
      7. 2149926Domain d4nbjg_: 4nbj G: [229948]
        automated match to d3ko3e_
        protein/RNA complex; complexed with d3y
      8. 2149927Domain d4nbjh_: 4nbj H: [229949]
        automated match to d3ko3d_
        protein/RNA complex; complexed with d3y
    14. Domains for 5j61:
      1. 2279789Domain d5j61f_: 5j61 F: [323090]
        automated match to d4nbia_
        protein/RNA complex; complexed with a3g
      2. 2279796Domain d5j61b_: 5j61 B: [323097]
        automated match to d4nbia_
        protein/RNA complex; complexed with a3g

More info for Protein automated matches from c.110.1.0: automated matches

Timeline for Protein automated matches from c.110.1.0: automated matches: