Lineage for Protein: automated matches

  1. Root: SCOPe 2.08
  2. Class a: All alpha proteins [46456] (290 folds)
  3. Fold a.1: Globin-like [46457] (2 superfamilies)
    core: 6 helices; folded leaf, partly opened
  4. Superfamily a.1.1: Globin-like [46458] (5 families) (S)
  5. Family a.1.1.0: automated matches [191420] (1 protein)
    not a true family
  6. Protein automated matches [190590] (26 species)
    not a true protein

Species:

  1. Acipenser persicus [TaxId:61968] [333449] (1 PDB entry)
  2. Acipenser stellatus [TaxId:7903] [333724] (1 PDB entry)
  3. Agrobacterium tumefaciens [TaxId:358] [189552] (1 PDB entry)
  4. Aquifex aeolicus [TaxId:224324] [398933] (1 PDB entry)
  5. Campylobacter jejuni [TaxId:197] [187859] (2 PDB entries)
    1. Domains for 2ig3:
      1. Domain d2ig3a_: 2ig3 A: [165538]
        automated match to d1ux8a_
        complexed with act, cyn, hem, so4
      2. Domain d2ig3b_: 2ig3 B: [165539]
        automated match to d1ux8a_
        complexed with act, cyn, hem, so4
    2. Domain for 2wy4:
  6. Chloroflexus aurantiacus [TaxId:324602] [320957] (1 PDB entry)
  7. Clam (Lucina pectinata) [TaxId:244486] [188300] (10 PDB entries)
    1. Domains for 2olp:
      1. Domain d2olpa_: 2olp A: [166763]
        automated match to d1b0ba_
        complexed with hem, oxy, so4
      2. Domain d2olpb_: 2olp B: [166764]
        automated match to d1b0ba_
        complexed with hem, oxy, so4
    2. Domains for 3pi1:
      1. Domain d3pi1a_: 3pi1 A: [183750]
        automated match to d1b0ba_
        complexed with hem, oxy
      2. Domain d3pi1b_: 3pi1 B: [183751]
        automated match to d1b0ba_
        complexed with hem, oxy
    3. Domains for 3pi2:
      1. Domain d3pi2a_: 3pi2 A: [183752]
        automated match to d1b0ba_
        complexed with fmt, hem, oxy
      2. Domain d3pi2b_: 3pi2 B: [183753]
        automated match to d1b0ba_
        complexed with fmt, hem, oxy
    4. Domains for 3pi3:
      1. Domain d3pi3a_: 3pi3 A: [183754]
        automated match to d1b0ba_
        complexed with hem, oxy
      2. Domain d3pi3b_: 3pi3 B: [183755]
        automated match to d1b0ba_
        complexed with hem, oxy
    5. Domains for 3pi4:
      1. Domain d3pi4a_: 3pi4 A: [248504]
        automated match to d3pt8a_
        complexed with hem
      2. Domain d3pi4b_: 3pi4 B: [248505]
        automated match to d3pt8a_
        complexed with hem
    6. Domains for 3pt7:
      1. Domain d3pt7a_: 3pt7 A: [183966]
        automated match to d1b0ba_
        complexed with gol, hem, oxy
      2. Domain d3pt7b_: 3pt7 B: [196096]
        automated match to d3pt8a_
        complexed with gol, hem, oxy
    7. Domains for 3pt8:
      1. Domain d3pt8a_: 3pt8 A: [183967]
        automated match to d1b0ba_
        complexed with cyn, fmt, gol, hem
      2. Domain d3pt8b_: 3pt8 B: [196095]
        automated match to d3pt8a_
        complexed with cyn, fmt, gol, hem
    8. Domain for 6otw:
    9. Domain for 6otx:
    10. Domain for 6oty:
  8. Dissostichus mawsoni [TaxId:36200] [379081] (1 PDB entry)
  9. Fasciola hepatica [TaxId:6192] [188561] (1 PDB entry)
  10. Fruit fly (Drosophila melanogaster) [TaxId:7227] [187733] (2 PDB entries)
    1. Domain for 2bk9:
    2. Domain for 2g3h:
  11. Gasterophilus intestinalis [TaxId:84525] [193835] (1 PDB entry)
  12. Green alga (Chlamydomonas reinhardtii) [TaxId:3055] [269183] (4 PDB entries)
    1. Domains for 4xdi:
      1. Domain d4xdia_: 4xdi A: [269184]
        automated match to d3aq5a_
        complexed with hem
      2. Domain d4xdib_: 4xdi B: [269187]
        automated match to d3aq5a_
        complexed with hem
    2. Domains for 6bme:
      1. Domain d6bmea_: 6bme A: [343040]
        automated match to d4xdia_
        complexed with hem, so4
      2. Domain d6bmeb_: 6bme B: [342995]
        automated match to d4xdia_
        complexed with hem, so4
    3. Domain for 6cii:
    4. Domain for 6td7:
  13. Lamellibrachia satsuma [TaxId:104711] [256471] (4 PDB entries)
    1. Domains for 3wct:
      1. Domain d3wcta_: 3wct A: [256472]
        automated match to d1yhua_
        complexed with ca, hem, oxy
      2. Domain d3wctb_: 3wct B: [256473]
        automated match to d1x9fb_
        complexed with ca, hem, oxy
      3. Domain d3wctc_: 3wct C: [256474]
        automated match to d2zs0c_
        complexed with ca, hem, oxy
      4. Domain d3wctd_: 3wct D: [256475]
        automated match to d2zs0c_
        complexed with ca, hem, oxy
      5. Domain d3wcte_: 3wct E: [258855]
        automated match to d1yhua_
        complexed with ca, hem, oxy
      6. Domain d3wctf_: 3wct F: [258851]
        automated match to d1x9fb_
        complexed with ca, hem, oxy
      7. Domain d3wctg_: 3wct G: [258847]
        automated match to d2zs0c_
        complexed with ca, hem, oxy
      8. Domain d3wcth_: 3wct H: [258853]
        automated match to d2zs0c_
        complexed with ca, hem, oxy
    2. Domains for 3wcu:
      1. Domain d3wcua_: 3wcu A: [258859]
        automated match to d1yhua_
        complexed with ca, hem
      2. Domain d3wcub_: 3wcu B: [258860]
        automated match to d1x9fb_
        complexed with ca, hem
      3. Domain d3wcuc_: 3wcu C: [258854]
        automated match to d2zs0c_
        complexed with ca, hem
      4. Domain d3wcud_: 3wcu D: [258870]
        automated match to d2zs0c_
        complexed with ca, hem
      5. Domain d3wcue_: 3wcu E: [258869]
        automated match to d1yhua_
        complexed with ca, hem
      6. Domain d3wcuf_: 3wcu F: [258871]
        automated match to d1x9fb_
        complexed with ca, hem
      7. Domain d3wcug_: 3wcu G: [258861]
        automated match to d2zs0c_
        complexed with ca, hem
      8. Domain d3wcuh_: 3wcu H: [258862]
        automated match to d2zs0c_
        complexed with ca, hem
    3. Domains for 3wcv:
      1. Domain d3wcva_: 3wcv A: [262388]
        automated match to d3wcta_
        complexed with ca, hem, oxy
      2. Domain d3wcvb_: 3wcv B: [258867]
        automated match to d1x9fb_
        complexed with ca, hem, oxy
      3. Domain d3wcvc_: 3wcv C: [258864]
        automated match to d2zs0c_
        complexed with ca, hem, oxy
      4. Domain d3wcvd_: 3wcv D: [258868]
        automated match to d2zs0c_
        complexed with ca, hem, oxy
      5. Domain d3wcve_: 3wcv E: [258872]
        automated match to d1yhua_
        complexed with ca, hem, oxy
      6. Domain d3wcvf_: 3wcv F: [262389]
        automated match to d3wctb_
        complexed with ca, hem, oxy
      7. Domain d3wcvg_: 3wcv G: [258863]
        automated match to d2zs0c_
        complexed with ca, hem, oxy
      8. Domain d3wcvh_: 3wcv H: [258865]
        automated match to d2zs0c_
        complexed with ca, hem, oxy
    4. Domains for 3wcw:
      1. Domain d3wcwa_: 3wcw A: [258852]
        automated match to d1yhua_
        complexed with hem, mg, oxy
      2. Domain d3wcwb_: 3wcw B: [258850]
        automated match to d1x9fb_
        complexed with hem, mg, oxy
      3. Domain d3wcwc_: 3wcw C: [258846]
        automated match to d2zs0c_
        complexed with hem, mg, oxy
      4. Domain d3wcwd_: 3wcw D: [258857]
        automated match to d2zs0c_
        complexed with hem, mg, oxy
      5. Domain d3wcwe_: 3wcw E: [258856]
        automated match to d1yhua_
        complexed with hem, mg, oxy
      6. Domain d3wcwf_: 3wcw F: [258849]
        automated match to d1x9fb_
        complexed with hem, mg, oxy
      7. Domain d3wcwg_: 3wcw G: [258858]
        automated match to d2zs0c_
        complexed with hem, mg, oxy
      8. Domain d3wcwh_: 3wcw H: [258848]
        automated match to d2zs0c_
        complexed with hem, mg, oxy
  14. Methylacidiphilum infernorum [TaxId:481448] [195689] (5 PDB entries)
    1. Domains for 3s1i:
      1. Domain d3s1ia_: 3s1i A: [216165]
        automated match to d2zlua_
        complexed with hem, oxy, so4
      2. Domain d3s1ib_: 3s1i B: [216166]
        automated match to d2zlua_
        complexed with hem, oxy, so4
      3. Domain d3s1ic_: 3s1i C: [216167]
        automated match to d2zlua_
        complexed with hem, oxy, so4
    2. Domains for 3s1j:
      1. Domain d3s1ja_: 3s1j A: [216168]
        automated match to d2zlua_
        complexed with act, hem, so4
      2. Domain d3s1jb_: 3s1j B: [216169]
        automated match to d2zlua_
        complexed with act, hem, so4
      3. Domain d3s1jc_: 3s1j C: [216170]
        automated match to d2zlua_
        complexed with act, hem, so4
    3. Domains for 3ubc:
      1. Domain d3ubca_: 3ubc A: [195690]
        automated match to d1oj6b_
        complexed with hem, oxy
      2. Domain d3ubcd_: 3ubc D: [200966]
        automated match to d3ubca_
        complexed with hem, oxy
      3. Domain d3ubcg_: 3ubc G: [200967]
        automated match to d3ubca_
        complexed with hem, oxy
    4. Domain for 3wfw:
    5. Domains for 3wfx:
      1. Domain d3wfxa1: 3wfx A:1-133 [258875]
        Other proteins in same PDB: d3wfxa2, d3wfxb2
        automated match to d2gdma_
        complexed with hem, hez, imd
      2. Domain d3wfxb1: 3wfx B:1-133 [258873]
        Other proteins in same PDB: d3wfxa2, d3wfxb2
        automated match to d2gdma_
        complexed with hem, hez, imd
  15. Mycobacterium tuberculosis [TaxId:1773] [278787] (1 PDB entry)
  16. Nematode (Caenorhabditis elegans) [TaxId:6239] [189323] (2 PDB entries)
    1. Domain for 2wtg:
    2. Domains for 2wth:
      1. Domain d2wtha_: 2wth A: [169616]
        automated match to d1asha_
        complexed with gol, hem, oxy, so4
      2. Domain d2wthb_: 2wth B: [169617]
        automated match to d1asha_
        complexed with gol, hem, oxy, so4
  17. Nostoc sp. [TaxId:103690] [280510] (2 PDB entries)
    1. Domains for 4xxi:
      1. Domain d4xxia_: 4xxi A: [280513]
        automated match to d4po5a_
        complexed with cyc
      2. Domain d4xxib_: 4xxi B: [280515]
        automated match to d4po5a_
        complexed with cyc
    2. Domains for 4xxk:
      1. Domain d4xxka1: 4xxk A:20-240 [280511]
        Other proteins in same PDB: d4xxka2
        automated match to d4po5a_
        complexed with cyc
      2. Domain d4xxkb_: 4xxk B: [280514]
        Other proteins in same PDB: d4xxka2
        automated match to d4po5a_
        complexed with cyc
  18. Oligobrachia mashikoi [TaxId:55676] [187601] (4 PDB entries)
    1. Domains for 2d2m:
      1. Domain d2d2ma_: 2d2m A: [163559]
        automated match to d1x9fb_
        complexed with hem, oxy
      2. Domain d2d2mb_: 2d2m B: [163560]
        automated match to d1x9fb_
        complexed with hem, oxy
      3. Domain d2d2mc_: 2d2m C: [163561]
        automated match to d1x9fa_
        complexed with hem, oxy
      4. Domain d2d2md_: 2d2m D: [163562]
        automated match to d1x9fa_
        complexed with hem, oxy
    2. Domains for 2zfo:
      1. Domain d2zfoa_: 2zfo A: [171194]
        automated match to d1x9fb_
        complexed with gol, hem, oxy
      2. Domain d2zfob_: 2zfo B: [171195]
        automated match to d1x9fb_
        complexed with gol, hem, oxy
      3. Domain d2zfoc_: 2zfo C: [171196]
        automated match to d1x9fa_
        complexed with gol, hem, oxy
      4. Domain d2zfod_: 2zfo D: [171197]
        automated match to d1x9fa_
        complexed with gol, hem, oxy
    3. Domains for 2zs0:
      1. Domain d2zs0a_: 2zs0 A: [171448]
        automated match to d1x9fb_
        complexed with ca, cl, gol, hem, oxy
      2. Domain d2zs0b_: 2zs0 B: [171449]
        automated match to d1x9fb_
        complexed with ca, cl, gol, hem, oxy
      3. Domain d2zs0c_: 2zs0 C: [171450]
        automated match to d1x9fa_
        complexed with ca, cl, gol, hem, oxy
      4. Domain d2zs0d_: 2zs0 D: [171451]
        automated match to d1x9fa_
        complexed with ca, cl, gol, hem, oxy
    4. Domains for 2zs1:
      1. Domain d2zs1a_: 2zs1 A: [171452]
        automated match to d1x9fb_
        complexed with cl, gol, hem, mg, oxy
      2. Domain d2zs1b_: 2zs1 B: [171453]
        automated match to d1x9fb_
        complexed with cl, gol, hem, mg, oxy
      3. Domain d2zs1c_: 2zs1 C: [171454]
        automated match to d1x9fa_
        complexed with cl, gol, hem, mg, oxy
      4. Domain d2zs1d_: 2zs1 D: [171455]
        automated match to d1x9fa_
        complexed with cl, gol, hem, mg, oxy
  19. Phacoides pectinatus [TaxId:244486] [383068] (3 PDB entries)
    1. Domain for 6otw:
    2. Domain for 6otx:
    3. Domain for 6oty:
  20. Ralstonia eutropha [TaxId:381666] [256009] (3 PDB entries)
    1. Domain for 3ozu:
    2. Domains for 3ozv:
      1. Domain d3ozva1: 3ozv A:1-150 [248382]
        Other proteins in same PDB: d3ozva2, d3ozva3, d3ozvb2, d3ozvb3
        automated match to d1cqxa1
        complexed with dgg, ecn, fad, hem, po4
      2. Domain d3ozvb1: 3ozv B:1-150 [248385]
        Other proteins in same PDB: d3ozva2, d3ozva3, d3ozvb2, d3ozvb3
        automated match to d1cqxa1
        complexed with dgg, ecn, fad, hem, po4
    3. Domains for 3ozw:
      1. Domain d3ozwa1: 3ozw A:1-150 [248388]
        Other proteins in same PDB: d3ozwa2, d3ozwa3, d3ozwb2, d3ozwb3
        automated match to d1cqxa1
        complexed with dgg, fad, hem, kkk, po4
      2. Domain d3ozwb1: 3ozw B:1-150 [248391]
        Other proteins in same PDB: d3ozwa2, d3ozwa3, d3ozwb2, d3ozwb3
        automated match to d1cqxa1
        complexed with dgg, fad, hem, kkk, po4
  21. Ramazzottius varieornatus [TaxId:947166] [361948] (2 PDB entries)
    1. Domains for 5ziq:
      1. Domain d5ziqa1: 5ziq A:37-190 [361975]
        Other proteins in same PDB: d5ziqa2, d5ziqb2, d5ziqc2
        automated match to d1hbra_
        complexed with edo, hem, so4
      2. Domain d5ziqb1: 5ziq B:37-190 [361991]
        Other proteins in same PDB: d5ziqa2, d5ziqb2, d5ziqc2
        automated match to d1hbra_
        complexed with edo, hem, so4
      3. Domain d5ziqc1: 5ziq C:37-190 [361963]
        Other proteins in same PDB: d5ziqa2, d5ziqb2, d5ziqc2
        automated match to d1hbra_
        complexed with edo, hem, so4
      4. Domain d5ziqd_: 5ziq D: [361949]
        Other proteins in same PDB: d5ziqa2, d5ziqb2, d5ziqc2
        automated match to d1hbra_
        complexed with edo, hem, so4
    2. Domain for 5zm9:
  22. Rhodothermus marinus [TaxId:518766] [389057] (1 PDB entry)
  23. Riftia pachyptila [TaxId:6426] [254981] (1 PDB entry)
  24. Synechocystis sp. [TaxId:1111708] [260740] (1 PDB entry)
  25. Tetrahymena pyriformis [TaxId:5908] [226112] (5 PDB entries)
    1. Domains for 3aq5:
      1. Domain d3aq5a_: 3aq5 A: [208302]
        automated match to d1s61b_
        complexed with hem, oxy
      2. Domain d3aq5b_: 3aq5 B: [208303]
        automated match to d1s61b_
        complexed with hem, oxy
    2. Domains for 3aq6:
      1. Domain d3aq6a_: 3aq6 A: [208304]
        automated match to d1s61b_
        complexed with hem
      2. Domain d3aq6b_: 3aq6 B: [208305]
        automated match to d1s61b_
        complexed with hem
    3. Domains for 3aq7:
      1. Domain d3aq7a_: 3aq7 A: [208306]
        automated match to d2gkmb_
        complexed with hem; mutant
      2. Domain d3aq7b_: 3aq7 B: [208307]
        automated match to d2gkmb_
        complexed with hem; mutant
    4. Domains for 3aq8:
      1. Domain d3aq8a_: 3aq8 A: [208308]
        automated match to d1idrb_
        complexed with hem; mutant
      2. Domain d3aq8b_: 3aq8 B: [208309]
        automated match to d1idrb_
        complexed with hem; mutant
    5. Domains for 3aq9:
      1. Domain d3aq9a_: 3aq9 A: [208310]
        automated match to d1idrb_
        complexed with hem; mutant
      2. Domain d3aq9b_: 3aq9 B: [208311]
        automated match to d1idrb_
        complexed with hem; mutant
  26. Tokunagayusurika akamusi [TaxId:28383] [188112] (10 PDB entries)
    1. Domain for 1x3k:
    2. Domain for 1x46:
    3. Domain for 2zwj:
    4. Domain for 3a5a:
    5. Domain for 3a5b:
    6. Domain for 3a5g:
    7. Domain for 3a9m:
    8. Domain for 3arj:
    9. Domain for 3ark:
    10. Domain for 3arl:

More info for Protein automated matches from a.1.1.0: automated matches

Timeline for Protein automated matches from a.1.1.0: automated matches: