Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2069078Fold b.78: beta-Prism II [51109] (1 superfamily)
    consists of 3 4-stranded sheets; strands are perpendicular to the 3-fold axis
    duplication: consists of two domains of this fold
  4. 2069079Superfamily b.78.1: alpha-D-mannose-specific plant lectins [51110] (2 families) (S)
  5. 2069131Family b.78.1.0: automated matches [191418] (1 protein)
    not a true family
  6. 2069132Protein automated matches [190587] (7 species)
    not a true protein

Species:

  1. 2069133Colocasia esculenta [TaxId:4460] [276542] (5 PDB entries)
    1. Domains for 5d5g:
      1. 2069134Domain d5d5ga_: 5d5g A: [276545]
        automated match to d3r0ea_
        complexed with epe, mg, so4
      2. 2069135Domain d5d5gb_: 5d5g B: [276543]
        automated match to d3r0eb_
        complexed with epe, mg, so4
      3. 2069136Domain d5d5gc_: 5d5g C: [276546]
        automated match to d3r0ea_
        complexed with epe, mg, so4
      4. 2069137Domain d5d5gd_: 5d5g D: [276544]
        automated match to d3r0eb_
        complexed with epe, mg, so4
    2. Domains for 5d9z:
      1. 2270042Domain d5d9za_: 5d9z A: [313347]
        automated match to d5d5ga_
      2. 2270044Domain d5d9zb_: 5d9z B: [313349]
        automated match to d5d5gd_
    3. Domains for 5j76:
      1. 2275500Domain d5j76b_: 5j76 B: [318801]
        automated match to d5d5gd_
        complexed with gol
      2. 2275510Domain d5j76a_: 5j76 A: [318811]
        automated match to d5d5ga_
        complexed with gol
    4. Domains for 5t1x:
      1. 2279423Domain d5t1xd_: 5t1x D: [322724]
        automated match to d3r0eb_
        complexed with edo, epe, pge
      2. 2279442Domain d5t1xa_: 5t1x A: [322743]
        automated match to d5d5ga_
        complexed with edo, epe, pge
      3. 2279449Domain d5t1xg_: 5t1x G: [322750]
        automated match to d5d5ga_
        complexed with edo, epe, pge
      4. 2279472Domain d5t1xh_: 5t1x H: [322773]
        automated match to d3r0eb_
        complexed with edo, epe, pge
      5. 2279530Domain d5t1xc_: 5t1x C: [322831]
        automated match to d5d5ga_
        complexed with edo, epe, pge
      6. 2279551Domain d5t1xe_: 5t1x E: [322852]
        automated match to d5d5ga_
        complexed with edo, epe, pge
      7. 2279555Domain d5t1xf_: 5t1x F: [322856]
        automated match to d3r0eb_
        complexed with edo, epe, pge
      8. 2279561Domain d5t1xb_: 5t1x B: [322862]
        automated match to d3r0eb_
        complexed with edo, epe, pge
    5. Domains for 5t20:
      1. 2279410Domain d5t20m_: 5t20 M: [322711]
        automated match to d5d5ga_
        complexed with edo, man
      2. 2279425Domain d5t20f_: 5t20 F: [322726]
        automated match to d3r0eb_
        complexed with edo, man
      3. 2279431Domain d5t20l_: 5t20 L: [322732]
        automated match to d3r0eb_
        complexed with edo, man
      4. 2279432Domain d5t20o_: 5t20 O: [322733]
        automated match to d5d5ga_
        complexed with edo, man
      5. 2279433Domain d5t20e_: 5t20 E: [322734]
        automated match to d5d5ga_
        complexed with edo, man
      6. 2279443Domain d5t20p_: 5t20 P: [322744]
        automated match to d3r0eb_
        complexed with edo, man
      7. 2279457Domain d5t20c_: 5t20 C: [322758]
        automated match to d5d5ga_
        complexed with edo, man
      8. 2279471Domain d5t20n_: 5t20 N: [322772]
        automated match to d3r0eb_
        complexed with edo, man
      9. 2279491Domain d5t20k_: 5t20 K: [322792]
        automated match to d5d5ga_
        complexed with edo, man
      10. 2279501Domain d5t20h_: 5t20 H: [322802]
        automated match to d3r0eb_
        complexed with edo, man
      11. 2279525Domain d5t20j_: 5t20 J: [322826]
        automated match to d3r0eb_
        complexed with edo, man
      12. 2279526Domain d5t20i_: 5t20 I: [322827]
        automated match to d5d5ga_
        complexed with edo, man
      13. 2279529Domain d5t20g_: 5t20 G: [322830]
        automated match to d5d5ga_
        complexed with edo, man
      14. 2279542Domain d5t20b_: 5t20 B: [322843]
        automated match to d3r0eb_
        complexed with edo, man
      15. 2279562Domain d5t20a_: 5t20 A: [322863]
        automated match to d5d5ga_
        complexed with edo, man
      16. 2279571Domain d5t20d_: 5t20 D: [322872]
        automated match to d3r0eb_
        complexed with edo, man
  2. 2069138Crocus vernus [TaxId:87752] [189995] (1 PDB entry)
  3. 2069143Curculigo latifolia [TaxId:4676] [187595] (2 PDB entries)
    1. Domains for 2d04:
      1. 2069148Domain d2d04a_: 2d04 A: [163518]
        automated match to d1npla_
        complexed with nag
      2. 2069149Domain d2d04b_: 2d04 B: [163519]
        automated match to d1npla_
        complexed with nag
      3. 2069150Domain d2d04c_: 2d04 C: [163520]
        automated match to d1npla_
        complexed with nag
      4. 2069151Domain d2d04d_: 2d04 D: [163521]
        automated match to d1npla_
        complexed with nag
      5. 2069152Domain d2d04e_: 2d04 E: [163522]
        automated match to d1npla_
        complexed with nag
      6. 2069153Domain d2d04f_: 2d04 F: [163523]
        automated match to d1npla_
        complexed with nag
      7. 2069154Domain d2d04g_: 2d04 G: [163524]
        automated match to d1npla_
        complexed with nag
      8. 2069155Domain d2d04h_: 2d04 H: [163525]
        automated match to d1npla_
        complexed with nag
    2. Domains for 2dpf:
      1. 2069144Domain d2dpfa_: 2dpf A: [163649]
        automated match to d1npla_
        complexed with so4
      2. 2069145Domain d2dpfb_: 2dpf B: [163650]
        automated match to d1npla_
        complexed with so4
      3. 2069146Domain d2dpfc_: 2dpf C: [163651]
        automated match to d1npla_
        complexed with so4
      4. 2069147Domain d2dpfd_: 2dpf D: [163652]
        automated match to d1npla_
        complexed with so4
  4. 2069156Fairy-ring mushroom (Marasmius oreades) [TaxId:181124] [271894] (2 PDB entries)
    1. Domain for 4pdt:
    2. Domain for 4tkc:
  5. 2069159Mycobacterium smegmatis [TaxId:246196] [258042] (2 PDB entries)
    1. Domains for 4oit:
      1. 2069160Domain d4oita1: 4oit A:2-105 [263291]
        Other proteins in same PDB: d4oita2, d4oitb2, d4oitc2, d4oitd2
        automated match to d4oitb_
        complexed with bma, man
      2. 2069161Domain d4oitb1: 4oit B:2-105 [258043]
        Other proteins in same PDB: d4oita2, d4oitb2, d4oitc2, d4oitd2
        automated match to d2d04f_
        complexed with bma, man
      3. 2069162Domain d4oitc1: 4oit C:2-105 [263292]
        Other proteins in same PDB: d4oita2, d4oitb2, d4oitc2, d4oitd2
        automated match to d4oitb_
        complexed with bma, man
      4. 2069163Domain d4oitd1: 4oit D:2-105 [263293]
        Other proteins in same PDB: d4oita2, d4oitb2, d4oitc2, d4oitd2
        automated match to d4oitb_
        complexed with bma, man
    2. Domains for 4okc:
      1. 2069164Domain d4okca1: 4okc A:1-105 [267070]
        Other proteins in same PDB: d4okca2, d4okcb2
        automated match to d4oitb_
      2. 2069165Domain d4okcb1: 4okc B:1-105 [267071]
        Other proteins in same PDB: d4okca2, d4okcb2
        automated match to d4oitb_
  6. 2069166Polygonatum cyrtonema [TaxId:195526] [189271] (3 PDB entries)
    1. Domains for 3a0c:
      1. 2069169Domain d3a0ca_: 3a0c A: [171624]
        automated match to d1jpca_
      2. 2069170Domain d3a0cb_: 3a0c B: [171625]
        automated match to d1jpca_
      3. 2069171Domain d3a0cc_: 3a0c C: [171626]
        automated match to d1jpca_
      4. 2069172Domain d3a0cd_: 3a0c D: [171627]
        automated match to d1jpca_
    2. Domain for 3a0d:
    3. Domain for 3a0e:
  7. 2069173Remusatia vivipara [TaxId:189456] [193663] (1 PDB entry)

More info for Protein automated matches from b.78.1.0: automated matches

Timeline for Protein automated matches from b.78.1.0: automated matches: