Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2413226Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2442470Fold c.26: Adenine nucleotide alpha hydrolase-like [52373] (3 superfamilies)
    core: 3 layers, a/b/a ; parallel beta-sheet of 5 strands, order 32145
  4. 2442471Superfamily c.26.1: Nucleotidylyl transferase [52374] (6 families) (S)
  5. 2442472Family c.26.1.1: Class I aminoacyl-tRNA synthetases (RS), catalytic domain [52375] (13 protein domains)
    contains a conserved all-alpha subdomain at the C-terminal extension
  6. 2442706Protein automated matches [190581] (10 species)
    not a true protein

Species:

  1. 2442707Archaeoglobus fulgidus [TaxId:2234] [187585] (1 PDB entry)
  2. 2442710Escherichia coli [TaxId:155864] [332253] (1 PDB entry)
  3. 2442713Escherichia coli [TaxId:562] [188048] (3 PDB entries)
    1. Domains for 1vbm:
      1. 2442715Domain d1vbma_: 1vbm A: [161842]
        automated match to d1tyae_
        protein/RNA complex; complexed with so4, ysa
      2. 2442716Domain d1vbmb_: 1vbm B: [161843]
        automated match to d1tyae_
        protein/RNA complex; complexed with so4, ysa
    2. Domains for 1vbn:
      1. 2442717Domain d1vbna_: 1vbn A: [161844]
        automated match to d1tyae_
        protein/RNA complex; complexed with ysa; mutant
      2. 2442718Domain d1vbnb_: 1vbn B: [161845]
        automated match to d1tyae_
        protein/RNA complex; complexed with ysa; mutant
    3. Domain for 1x8x:
  4. 2442719Methanocaldococcus jannaschii [TaxId:2190] [188187] (8 PDB entries)
    1. Domain for 1zh0:
    2. Domain for 2pxh:
    3. Domain for 2zp1:
    4. Domain for 3d6u:
    5. Domain for 3d6v:
    6. Domain for 4hk4:
    7. Domain for 4hpw:
    8. Domain for 4nx2:
  5. 2442728Methanocaldococcus jannaschii [TaxId:243232] [193079] (12 PDB entries)
    1. Domains for 4hjr:
      1. 2442737Domain d4hjra1: 4hjr A:1-306 [193081]
        Other proteins in same PDB: d4hjra2
        automated match to d2pxha_
      2. 2442738Domain d4hjrb_: 4hjr B: [193080]
        Other proteins in same PDB: d4hjra2
        automated match to d2pxha_
    2. Domains for 4hjx:
      1. 2442739Domain d4hjxa_: 4hjx A: [222644]
        automated match to d4hjrb_
        protein/RNA complex; complexed with f2y
      2. 2442740Domain d4hjxb_: 4hjx B: [222645]
        automated match to d4hjrb_
        protein/RNA complex; complexed with f2y
    3. Domain for 4nd6:
    4. Domain for 4nd7:
    5. Domain for 4nda:
    6. Domain for 4pbr:
    7. Domain for 4pbs:
    8. Domain for 4pbt:
    9. Domains for 5l7p:
      1. 2442732Domain d5l7pa_: 5l7p A: [338902]
        automated match to d4nd6a_
        complexed with 1pe, buu, ca, cl
      2. 2442733Domain d5l7pb_: 5l7p B: [338901]
        automated match to d4nd6a_
        complexed with 1pe, buu, ca, cl
    10. Domain for 5n5u:
    11. Domains for 5n5v:
      1. 3046668Domain d5n5ve1: 5n5v E:1-306 [346730]
        Other proteins in same PDB: d5n5va2, d5n5vb2, d5n5vd2, d5n5ve2, d5n5vf2, d5n5vg2, d5n5vh2
        automated match to d1u7xa_
        complexed with cl
      2. 3046670Domain d5n5va1: 5n5v A:1-306 [346732]
        Other proteins in same PDB: d5n5va2, d5n5vb2, d5n5vd2, d5n5ve2, d5n5vf2, d5n5vg2, d5n5vh2
        automated match to d1u7xa_
        complexed with cl
      3. 3046710Domain d5n5vd1: 5n5v D:1-306 [346772]
        Other proteins in same PDB: d5n5va2, d5n5vb2, d5n5vd2, d5n5ve2, d5n5vf2, d5n5vg2, d5n5vh2
        automated match to d1u7xa_
        complexed with cl
      4. 3046769Domain d5n5vg1: 5n5v G:1-306 [346831]
        Other proteins in same PDB: d5n5va2, d5n5vb2, d5n5vd2, d5n5ve2, d5n5vf2, d5n5vg2, d5n5vh2
        automated match to d1u7xa_
        complexed with cl
      5. 3046801Domain d5n5vh1: 5n5v H:1-306 [346863]
        Other proteins in same PDB: d5n5va2, d5n5vb2, d5n5vd2, d5n5ve2, d5n5vf2, d5n5vg2, d5n5vh2
        automated match to d1u7xa_
        complexed with cl
      6. 3046855Domain d5n5vf1: 5n5v F:1-306 [346917]
        Other proteins in same PDB: d5n5va2, d5n5vb2, d5n5vd2, d5n5ve2, d5n5vf2, d5n5vg2, d5n5vh2
        automated match to d1u7xa_
        complexed with cl
      7. 3047074Domain d5n5vb1: 5n5v B:1-306 [347136]
        Other proteins in same PDB: d5n5va2, d5n5vb2, d5n5vd2, d5n5ve2, d5n5vf2, d5n5vg2, d5n5vh2
        automated match to d1u7xa_
        complexed with cl
      8. 3047192Domain d5n5vc_: 5n5v C: [347254]
        Other proteins in same PDB: d5n5va2, d5n5vb2, d5n5vd2, d5n5ve2, d5n5vf2, d5n5vg2, d5n5vh2
        automated match to d1u7xa_
        complexed with cl
    12. Domains for 5u36:
      1. 2442741Domain d5u36a1: 5u36 A:2-306 [335135]
        Other proteins in same PDB: d5u36a2, d5u36b2
        automated match to d1u7xa_
        mutant
      2. 2442742Domain d5u36b1: 5u36 B:2-306 [335151]
        Other proteins in same PDB: d5u36a2, d5u36b2
        automated match to d1u7xa_
        mutant
  6. 2442743Thermus thermophilus HB8 [TaxId:300852] [233866] (1 PDB entry)
  7. 2442745Thermus thermophilus [TaxId:274] [254946] (3 PDB entries)
    1. Domain for 1woy:
    2. Domain for 2d54:
    3. Domain for 2d5b:
  8. 2442749Vibrio cholerae [TaxId:243277] [196171] (1 PDB entry)
  9. 2442751Yersinia pestis [TaxId:214092] [189402] (1 PDB entry)
  10. 3052377Haemophilus influenzae [TaxId:71421] [352439] (1 PDB entry)

More info for Protein automated matches from c.26.1.1: Class I aminoacyl-tRNA synthetases (RS), catalytic domain

Timeline for Protein automated matches from c.26.1.1: Class I aminoacyl-tRNA synthetases (RS), catalytic domain:

  • Protein automated matches from c.26.1.1: Class I aminoacyl-tRNA synthetases (RS), catalytic domain first appeared in SCOPe 2.01
  • Protein automated matches from c.26.1.1: Class I aminoacyl-tRNA synthetases (RS), catalytic domain appears in SCOPe 2.06